Wall clock time and date at job start Tue Mar 31 2020 14:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39554 * 120.14642 * 347.72237 * 3 2 1 5 5 C 1.37950 * 119.85791 * 180.27537 * 4 3 2 6 6 C 1.38366 * 120.13796 * 359.72553 * 5 4 3 7 7 C 1.38318 * 120.29249 * 0.02562 * 6 5 4 8 8 C 1.38006 * 120.14027 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.07376 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46969 * 265.00110 * 9 8 7 11 11 O 1.21274 * 120.00073 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99588 * 180.27393 * 10 9 8 13 13 C 1.46927 * 120.63230 * 359.72894 * 12 10 9 14 14 C 1.53187 * 108.77911 * 126.36535 * 13 12 10 15 15 C 1.53045 * 109.31237 * 54.63493 * 14 13 12 16 16 C 1.53050 * 109.53628 * 298.63316 * 15 14 13 17 17 H 1.09000 * 109.49549 * 301.41481 * 16 15 14 18 18 N 1.46496 * 109.49564 * 181.35158 * 16 15 14 19 19 C 1.46500 * 120.00065 * 299.99659 * 18 16 15 20 20 C 1.36933 * 120.00087 * 120.00358 * 18 16 15 21 21 H 1.08004 * 120.00040 * 21.99243 * 20 18 16 22 22 C 1.38815 * 120.00387 * 201.99283 * 20 18 16 23 23 N 1.31620 * 119.99249 * 12.71486 * 22 20 18 24 24 Si 1.86800 * 120.00325 * 192.71347 * 22 20 18 25 25 H 1.48502 * 109.46906 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47187 * 119.99976 * 24 22 20 27 27 H 1.48497 * 109.46816 * 239.99841 * 24 22 20 28 28 C 1.46931 * 120.62912 * 179.43944 * 12 10 9 29 29 H 4.52083 * 14.02112 * 0.02562 * 4 2 1 30 30 H 1.08003 * 120.06839 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.92968 * 179.74829 * 5 4 3 32 32 H 1.08008 * 119.85254 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.93069 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.46622 * 144.99776 * 9 8 7 35 35 H 1.09004 * 109.46848 * 25.00262 * 9 8 7 36 36 H 1.09002 * 109.57959 * 246.15151 * 13 12 10 37 37 H 1.08996 * 109.58775 * 6.42968 * 13 12 10 38 38 H 1.08999 * 109.50057 * 174.58258 * 14 13 12 39 39 H 1.08999 * 109.49686 * 294.68439 * 14 13 12 40 40 H 1.08990 * 109.46484 * 58.65213 * 15 14 13 41 41 H 1.09000 * 109.45771 * 178.61869 * 15 14 13 42 42 H 1.08998 * 109.47050 * 94.32982 * 19 18 16 43 43 H 1.08995 * 109.47360 * 214.32702 * 19 18 16 44 44 H 1.09003 * 109.47255 * 334.33154 * 19 18 16 45 45 H 0.97004 * 119.99451 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.58419 * 353.42594 * 28 12 10 47 47 H 1.08995 * 109.58197 * 113.84514 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3074 -1.1782 0.2566 5 6 4.6869 -1.1696 0.2608 6 6 5.3750 0.0033 0.0056 7 6 4.6859 1.1741 -0.2546 8 6 3.3059 1.1789 -0.2617 9 6 2.5566 2.4551 -0.5459 10 6 2.1934 3.1246 0.7545 11 8 2.5112 2.6152 1.8082 12 7 1.5101 4.2862 0.7465 13 6 1.1175 4.9151 -0.5221 14 6 -0.3915 5.1777 -0.4961 15 6 -0.7410 5.9989 0.7472 16 6 -0.3664 5.2097 2.0038 17 1 -0.9007 4.2597 2.0096 18 7 -0.7309 5.9829 3.1935 19 6 -0.1405 7.3049 3.4172 20 6 -1.6233 5.4699 4.0966 21 1 -1.7886 4.4038 4.1465 22 6 -2.3156 6.3202 4.9479 23 7 -2.3107 7.6180 4.7287 24 14 -3.2541 5.6225 6.4046 25 1 -3.1032 4.1453 6.4291 26 1 -2.7134 6.1967 7.6628 27 1 -4.6923 5.9706 6.2795 28 6 1.1380 4.9446 2.0062 29 1 -1.0500 -0.0013 -0.0002 30 1 2.7713 -2.0943 0.4564 31 1 5.2308 -2.0804 0.4632 32 1 6.4551 0.0047 0.0096 33 1 5.2289 2.0864 -0.4526 34 1 1.6481 2.2266 -1.1031 35 1 3.1859 3.1225 -1.1348 36 1 1.6505 5.8583 -0.6425 37 1 1.3605 4.2497 -1.3504 38 1 -0.6801 5.7304 -1.3901 39 1 -0.9256 4.2279 -0.4667 40 1 -0.1877 6.9378 0.7297 41 1 -1.8108 6.2080 0.7553 42 1 -0.8061 8.0718 3.0213 43 1 0.0011 7.4634 4.4863 44 1 0.8229 7.3631 2.9105 45 1 -2.7941 8.2122 5.3238 46 1 1.3924 4.2975 2.8456 47 1 1.6727 5.8902 2.0960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027664103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:31 Heat of formation + Delta-G solvation = 50.964408 kcal Electronic energy + Delta-G solvation = -27684.880138 eV Core-core repulsion = 24026.974400 eV Total energy + Delta-G solvation = -3657.905737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46222 -40.16053 -38.78160 -36.77113 -34.89507 -34.13689 -33.49814 -32.86680 -31.17087 -30.66815 -28.72624 -28.07373 -26.11644 -25.25535 -24.21544 -23.05192 -22.82776 -21.06859 -19.96363 -19.55780 -18.80097 -18.22638 -17.31758 -17.11013 -16.81879 -16.61970 -15.99950 -15.89801 -15.70277 -15.29717 -15.18531 -14.76356 -14.59255 -14.50290 -14.14916 -13.96222 -13.90910 -13.67445 -13.57527 -13.04312 -12.90117 -12.83587 -12.55152 -12.39238 -12.30439 -12.17660 -12.10214 -12.08277 -11.94321 -11.79863 -11.69244 -11.40324 -11.36591 -10.90161 -10.68634 -9.76339 -9.69338 -9.39807 -8.78385 -7.86321 -5.33894 0.00011 0.40386 1.41414 1.43377 1.53672 1.63453 1.75786 2.00147 2.10782 2.48224 3.00354 3.26459 3.38394 3.58888 3.61612 3.75249 3.90091 3.99589 4.09444 4.13578 4.17316 4.25779 4.32172 4.36270 4.45888 4.54917 4.61893 4.67397 4.72741 4.75441 4.77616 4.87499 4.90496 5.02386 5.08761 5.14857 5.18720 5.27015 5.43521 5.48229 5.48736 5.52665 5.54927 5.57440 5.61895 5.70418 6.02959 6.29517 6.47733 6.56598 7.11791 7.20348 7.83618 8.25693 9.16310 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.003116 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.223369 B = 8982.293430 C = 9610.837600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.182 4.182 3 C -0.005 4.005 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.062 4.062 9 C -0.093 4.093 10 C 0.511 3.489 11 O -0.585 6.585 12 N -0.606 5.606 13 C 0.103 3.897 14 C -0.123 4.123 15 C -0.122 4.122 16 C 0.169 3.831 17 H 0.040 0.960 18 N -0.610 5.610 19 C 0.180 3.820 20 C -0.266 4.266 21 H 0.060 0.940 22 C -0.048 4.048 23 N -0.933 5.933 24 Si 0.965 3.035 25 H -0.273 1.273 26 H -0.289 1.289 27 H -0.287 1.287 28 C 0.114 3.886 29 H 0.249 0.751 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.114 0.886 35 H 0.141 0.859 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.009 0.991 43 H 0.013 0.987 44 H 0.030 0.970 45 H 0.249 0.751 46 H 0.050 0.950 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.391 -12.167 -18.941 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.182 4.182 3 C -0.006 4.006 4 C -0.131 4.131 5 C -0.140 4.140 6 C -0.130 4.130 7 C -0.134 4.134 8 C -0.062 4.062 9 C -0.133 4.133 10 C 0.301 3.699 11 O -0.465 6.465 12 N -0.339 5.339 13 C -0.018 4.018 14 C -0.162 4.162 15 C -0.161 4.161 16 C 0.061 3.939 17 H 0.058 0.942 18 N -0.333 5.333 19 C 0.036 3.964 20 C -0.396 4.396 21 H 0.077 0.923 22 C -0.243 4.243 23 N -0.580 5.580 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.216 1.216 27 H -0.213 1.213 28 C -0.011 4.011 29 H 0.265 0.735 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.132 0.868 35 H 0.158 0.842 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.027 0.973 43 H 0.032 0.968 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.490 -12.294 -18.293 25.842 hybrid contribution -1.244 0.029 1.567 2.001 sum 12.247 -12.266 -16.727 24.088 Atomic orbital electron populations 1.25642 0.96594 0.98281 0.98284 1.20480 0.92866 1.02372 1.02442 1.16140 0.86785 0.94838 1.02792 1.21405 0.95299 0.96946 0.99490 1.21419 0.93296 0.99807 0.99440 1.21611 1.01560 0.92120 0.97729 1.21270 0.92515 0.99817 0.99772 1.19602 0.94357 0.92865 0.99405 1.20756 1.03021 0.94821 0.94660 1.21116 0.77092 0.79963 0.91729 1.90694 1.55903 1.64650 1.35249 1.48256 1.54814 1.22894 1.07922 1.22109 0.95298 0.99886 0.84503 1.21894 0.95829 1.00453 0.98008 1.21926 1.00390 0.99060 0.94740 1.20600 0.92451 0.93876 0.86963 0.94172 1.44089 1.49091 1.17668 1.22466 1.20495 0.92716 0.85811 0.97393 1.19495 1.16229 0.91343 1.12541 0.92263 1.25681 0.99837 0.95937 1.02832 1.70224 1.46210 1.02788 1.38752 0.85232 0.77989 0.77900 0.79507 1.19818 1.21560 1.21345 1.21769 0.96628 0.96500 0.86154 0.73477 0.85033 0.82923 0.82808 0.83625 0.86781 0.84166 0.89399 0.86371 0.87711 0.92114 0.92229 0.94022 0.97296 0.96819 0.95159 0.94147 0.93091 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 19.25 74.32 1.43 -2.67 16 2 C -0.18 -4.99 11.80 30.02 0.35 -4.63 16 3 C -0.01 -0.15 5.72 -21.40 -0.12 -0.27 16 4 C -0.11 -2.54 9.75 22.52 0.22 -2.32 16 5 C -0.12 -2.15 10.03 22.23 0.22 -1.92 16 6 C -0.11 -1.89 10.04 22.32 0.22 -1.66 16 7 C -0.12 -2.26 9.67 22.23 0.21 -2.05 16 8 C -0.06 -1.47 4.41 -19.61 -0.09 -1.56 16 9 C -0.09 -1.94 3.69 29.10 0.11 -1.83 16 10 C 0.51 15.74 7.68 87.66 0.67 16.41 16 11 O -0.59 -24.20 15.45 -3.01 -0.05 -24.25 16 12 N -0.61 -17.68 2.98 -819.76 -2.44 -20.12 16 13 C 0.10 1.98 6.35 86.36 0.55 2.53 16 14 C -0.12 -2.77 6.08 30.67 0.19 -2.58 16 15 C -0.12 -4.12 5.15 30.63 0.16 -3.96 16 16 C 0.17 7.09 2.72 44.93 0.12 7.21 16 17 H 0.04 1.84 7.86 -2.39 -0.02 1.82 16 18 N -0.61 -31.59 2.82 -703.16 -1.98 -33.57 16 19 C 0.18 9.07 8.03 127.77 1.03 10.10 16 20 C -0.27 -15.34 9.60 84.03 0.81 -14.53 16 21 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 22 C -0.05 -2.74 5.10 84.86 0.43 -2.31 16 23 N -0.93 -55.88 10.64 21.65 0.23 -55.65 16 24 Si 0.97 46.77 29.57 68.60 2.03 48.79 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 28 C 0.11 4.35 5.77 86.22 0.50 4.85 16 29 H 0.25 4.06 7.80 -4.42 -0.03 4.02 16 30 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.11 2.09 6.84 -2.39 -0.02 2.08 16 35 H 0.14 1.77 7.85 -2.39 -0.02 1.75 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 1.40 5.93 -2.39 -0.01 1.39 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.99 7.72 -2.39 -0.02 1.97 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.01 0.47 7.41 -2.39 -0.02 0.46 16 43 H 0.01 0.73 7.21 -2.39 -0.02 0.71 16 44 H 0.03 1.29 6.35 -2.39 -0.02 1.27 16 45 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.05 2.32 7.01 -2.39 -0.02 2.30 16 47 H 0.07 2.42 6.48 -2.39 -0.02 2.41 16 Total: -1.00 -78.81 383.00 5.76 -73.05 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.95 Total: 12.96 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 7.02 Total: -1.21 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -4.19 Total: -109.34 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.05 Total: -24.25 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -78.81 5.76 -73.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027664103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.010 kcal (2) G-P(sol) polarization free energy of solvation -78.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds