Wall clock time and date at job start Tue Mar 31 2020 14:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39552 * 120.14527 * 29.71946 * 3 2 1 5 5 C 1.37948 * 119.85522 * 179.72148 * 4 3 2 6 6 C 1.38364 * 120.14289 * 0.57607 * 5 4 3 7 7 C 1.38324 * 120.28568 * 359.70338 * 6 5 4 8 8 C 1.37996 * 120.14324 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.07226 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47265 * 265.02174 * 9 8 7 11 11 O 1.21284 * 119.99466 * 0.02562 * 10 9 8 12 12 N 1.34768 * 119.99992 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63078 * 0.02562 * 12 10 9 14 14 C 1.53197 * 108.77116 * 233.58213 * 13 12 10 15 15 C 1.53037 * 109.31571 * 305.36389 * 14 13 12 16 16 C 1.53040 * 109.53725 * 61.36471 * 15 14 13 17 17 H 1.09001 * 109.49438 * 58.59102 * 16 15 14 18 18 N 1.46504 * 109.49896 * 178.65076 * 16 15 14 19 19 C 1.46500 * 119.99639 * 60.00104 * 18 16 15 20 20 C 1.36940 * 120.00064 * 240.00659 * 18 16 15 21 21 H 1.08000 * 119.99600 * 324.56380 * 20 18 16 22 22 C 1.38807 * 119.99896 * 144.56397 * 20 18 16 23 23 N 1.31622 * 119.99641 * 157.65501 * 22 20 18 24 24 Si 1.86792 * 120.00295 * 337.65404 * 22 20 18 25 25 H 1.48500 * 109.47652 * 95.55997 * 24 22 20 26 26 H 1.48504 * 109.47281 * 215.56087 * 24 22 20 27 27 H 1.48499 * 109.47163 * 335.55868 * 24 22 20 28 28 C 1.46925 * 120.63198 * 179.72319 * 12 10 9 29 29 H 4.52088 * 14.02176 * 0.02562 * 4 2 1 30 30 H 1.07999 * 120.06891 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.92831 * 180.30242 * 5 4 3 32 32 H 1.08003 * 119.86054 * 179.71749 * 6 5 4 33 33 H 1.08005 * 119.92747 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47159 * 25.02681 * 9 8 7 35 35 H 1.09004 * 109.46678 * 145.02420 * 9 8 7 36 36 H 1.08993 * 109.58745 * 353.37116 * 13 12 10 37 37 H 1.09001 * 109.58446 * 113.79844 * 13 12 10 38 38 H 1.08998 * 109.50015 * 65.32023 * 14 13 12 39 39 H 1.09005 * 109.49248 * 185.41098 * 14 13 12 40 40 H 1.08996 * 109.45928 * 181.38617 * 15 14 13 41 41 H 1.09007 * 109.45888 * 301.35884 * 15 14 13 42 42 H 1.08997 * 109.47110 * 88.03078 * 19 18 16 43 43 H 1.09004 * 109.46833 * 208.03000 * 19 18 16 44 44 H 1.09000 * 109.47331 * 328.02706 * 19 18 16 45 45 H 0.96994 * 119.99936 * 180.02562 * 23 22 20 46 46 H 1.09005 * 109.58567 * 246.20459 * 28 12 10 47 47 H 1.09007 * 109.58610 * 6.62657 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3073 -1.0471 -0.5983 5 6 4.6868 -1.0375 -0.5999 6 6 5.3751 0.0019 0.0004 7 6 4.6860 1.0404 0.6002 8 6 3.3060 1.0462 0.6029 9 6 2.5568 2.1788 1.2563 10 6 2.1995 1.7956 2.6694 11 8 2.5220 0.7099 3.1032 12 7 1.5227 2.6598 3.4512 13 6 1.1257 3.9788 2.9399 14 6 1.6367 5.0551 3.9030 15 6 1.1328 4.7509 5.3156 16 6 1.6777 3.3957 5.7726 17 1 2.7673 3.4156 5.7506 18 7 1.2211 3.1200 7.1371 19 6 -0.2125 3.0408 7.4278 20 6 2.1345 2.9365 8.1408 21 1 3.0705 2.4387 7.9346 22 6 1.8572 3.3902 9.4229 23 7 2.4775 2.8616 10.4565 24 14 0.6039 4.7509 9.6816 25 1 -0.7169 4.1529 10.0028 26 1 1.0405 5.6190 10.8046 27 1 0.4918 5.5626 8.4432 28 6 1.1619 2.2984 4.8288 29 1 -1.0500 -0.0006 -0.0009 30 1 2.7712 -1.8611 -1.0633 31 1 5.2307 -1.8454 -1.0668 32 1 6.4551 0.0024 0.0005 33 1 5.2291 1.8491 1.0668 34 1 3.1844 3.0700 1.2691 35 1 1.6458 2.3839 0.6941 36 1 1.5616 4.1346 1.9532 37 1 0.0390 4.0334 2.8744 38 1 2.7267 5.0594 3.8986 39 1 1.2674 6.0308 3.5872 40 1 1.4746 5.5286 5.9984 41 1 0.0431 4.7221 5.3141 42 1 -0.5599 2.0202 7.2675 43 1 -0.3893 3.3262 8.4649 44 1 -0.7551 3.7172 6.7673 45 1 2.2836 3.1783 11.3525 46 1 0.0781 2.2189 4.9138 47 1 1.6218 1.3449 5.0888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027664104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:36 Heat of formation + Delta-G solvation = 74.482509 kcal Electronic energy + Delta-G solvation = -27636.173184 eV Core-core repulsion = 23979.287268 eV Total energy + Delta-G solvation = -3656.885916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.37208 -39.22577 -37.45845 -35.26296 -34.08044 -32.92435 -32.26254 -31.53586 -30.38050 -29.66597 -27.82282 -26.17349 -24.98520 -23.74166 -23.40839 -22.00879 -21.65905 -19.67631 -18.97833 -18.55503 -17.12454 -16.79755 -16.49501 -15.94651 -15.78688 -15.42561 -15.01434 -14.87993 -14.21552 -14.09999 -13.84644 -13.78820 -13.55848 -13.28253 -12.99983 -12.87775 -12.54045 -12.43659 -12.29482 -12.22362 -12.04022 -11.65109 -11.42293 -11.28456 -11.28028 -11.03832 -10.71479 -10.55140 -10.48503 -10.37774 -10.11904 -9.94721 -9.68336 -9.52691 -8.96415 -8.66971 -8.59480 -8.32436 -6.86564 -5.98904 -3.39483 0.79872 1.19325 2.60994 2.79408 2.89231 3.15388 3.30015 3.45150 3.49790 3.84212 4.13328 4.46352 4.51279 4.65286 4.67312 4.80779 4.85281 5.01667 5.07721 5.14067 5.20965 5.23129 5.26628 5.34402 5.43419 5.47746 5.50760 5.62639 5.76978 5.81651 5.87408 5.93256 6.00670 6.11101 6.20601 6.23388 6.30055 6.32282 6.36811 6.39206 6.50277 6.61752 6.71072 6.76443 6.85576 6.89156 7.39778 7.59293 8.02835 8.34255 8.39386 8.96537 9.70165 10.08418 11.16753 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.002961 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.192356 B = 9452.433252 C = 9831.637980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C 0.021 3.979 4 C -0.096 4.096 5 C -0.122 4.122 6 C -0.108 4.108 7 C -0.106 4.106 8 C -0.039 4.039 9 C -0.104 4.104 10 C 0.516 3.484 11 O -0.530 6.530 12 N -0.608 5.608 13 C 0.107 3.893 14 C -0.132 4.132 15 C -0.138 4.138 16 C 0.168 3.832 17 H 0.074 0.926 18 N -0.602 5.602 19 C 0.108 3.892 20 C -0.269 4.269 21 H 0.080 0.920 22 C 0.033 3.967 23 N -0.900 5.900 24 Si 0.885 3.115 25 H -0.288 1.288 26 H -0.304 1.304 27 H -0.270 1.270 28 C 0.101 3.899 29 H 0.223 0.777 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.045 0.955 44 H 0.031 0.969 45 H 0.263 0.737 46 H 0.060 0.940 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 0.416 -25.416 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.141 4.141 3 C 0.021 3.979 4 C -0.114 4.114 5 C -0.140 4.140 6 C -0.126 4.126 7 C -0.124 4.124 8 C -0.039 4.039 9 C -0.144 4.144 10 C 0.303 3.697 11 O -0.406 6.406 12 N -0.342 5.342 13 C -0.016 4.016 14 C -0.170 4.170 15 C -0.178 4.178 16 C 0.060 3.940 17 H 0.093 0.907 18 N -0.325 5.325 19 C -0.036 4.036 20 C -0.397 4.397 21 H 0.098 0.902 22 C -0.167 4.167 23 N -0.541 5.541 24 Si 0.716 3.284 25 H -0.216 1.216 26 H -0.232 1.232 27 H -0.195 1.195 28 C -0.023 4.023 29 H 0.240 0.760 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.007 -0.187 -24.957 24.978 hybrid contribution -1.029 0.875 0.436 1.420 sum -2.036 0.689 -24.521 24.615 Atomic orbital electron populations 1.24854 0.95740 0.99325 0.99849 1.19975 0.92014 1.01216 1.00944 1.15776 0.86521 0.95437 1.00172 1.21131 0.94252 0.97171 0.98866 1.21047 0.93825 0.98808 1.00287 1.21221 1.00102 0.93959 0.97348 1.20952 0.92938 0.99336 0.99193 1.19365 0.93463 0.94644 0.96469 1.20736 1.01816 0.97927 0.93942 1.20308 0.77924 0.84563 0.86902 1.90734 1.53132 1.22119 1.74572 1.48154 1.56113 1.15814 1.14159 1.21757 0.99940 0.82557 0.97338 1.21917 1.01500 0.97594 0.96029 1.22145 1.00579 1.00188 0.94862 1.20819 0.98343 0.90352 0.84478 0.90730 1.44038 1.01409 1.82885 1.04185 1.21338 0.85319 0.97898 0.99048 1.18827 1.00836 1.32541 0.87521 0.90199 1.25420 0.97727 0.97911 0.95665 1.69876 1.44721 1.41242 0.98306 0.86833 0.80625 0.83843 0.77072 1.21607 1.23193 1.19459 1.22393 0.99719 1.01219 0.78961 0.76047 0.85715 0.85597 0.85623 0.85491 0.87800 0.88129 0.90275 0.91508 0.91469 0.91186 0.91408 0.92513 0.96559 0.93654 0.95082 0.92694 0.92216 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 19.25 29.55 0.57 -1.35 16 2 C -0.14 -1.79 11.80 -38.84 -0.46 -2.25 16 3 C 0.02 0.27 5.72 -107.00 -0.61 -0.34 16 4 C -0.10 -1.06 9.75 -39.20 -0.38 -1.44 16 5 C -0.12 -1.17 10.03 -39.64 -0.40 -1.56 16 6 C -0.11 -1.06 10.04 -39.50 -0.40 -1.45 16 7 C -0.11 -1.17 9.67 -39.64 -0.38 -1.56 16 8 C -0.04 -0.48 4.41 -104.23 -0.46 -0.94 16 9 C -0.10 -1.18 3.69 -29.04 -0.11 -1.29 16 10 C 0.52 8.00 7.69 -10.99 -0.08 7.92 16 11 O -0.53 -10.60 15.45 5.55 0.09 -10.52 16 12 N -0.61 -8.96 2.97 -172.48 -0.51 -9.47 16 13 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 14 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 15 C -0.14 -2.24 5.11 -26.69 -0.14 -2.38 16 16 C 0.17 3.30 2.76 -67.57 -0.19 3.12 16 17 H 0.07 1.59 7.89 -51.93 -0.41 1.18 16 18 N -0.60 -14.30 2.42 -173.07 -0.42 -14.72 16 19 C 0.11 2.37 8.45 59.85 0.51 2.87 16 20 C -0.27 -7.61 9.85 -15.06 -0.15 -7.76 16 21 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 22 C 0.03 0.96 5.31 -17.43 -0.09 0.87 16 23 N -0.90 -27.79 13.97 55.49 0.78 -27.01 16 24 Si 0.89 22.28 24.94 -169.99 -4.24 18.04 16 25 H -0.29 -7.07 6.67 56.52 0.38 -6.69 16 26 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.10 1.81 5.81 -3.47 -0.02 1.79 16 29 H 0.22 1.51 7.80 -54.09 -0.42 1.09 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 32 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 34 H 0.10 0.90 7.60 -51.93 -0.39 0.51 16 35 H 0.10 0.99 7.08 -51.93 -0.37 0.62 16 36 H 0.08 0.63 5.93 -51.93 -0.31 0.33 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.89 6.73 -51.93 -0.35 0.54 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 1.07 3.08 -51.93 -0.16 0.91 16 44 H 0.03 0.58 6.46 -51.93 -0.34 0.25 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 46 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 47 H 0.09 1.95 7.00 -51.93 -0.36 1.59 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -34.98 378.80 -8.46 -43.45 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.89 Total: 0.86 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.98 Total: -6.34 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.15 Total: -51.20 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.24 Total: 18.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.98 -8.46 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027664104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.930 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds