Wall clock time and date at job start Tue Mar 31 2020 14:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39552 * 120.14527 * 29.71946 * 3 2 1 5 5 C 1.37948 * 119.85522 * 179.72148 * 4 3 2 6 6 C 1.38364 * 120.14289 * 0.57607 * 5 4 3 7 7 C 1.38324 * 120.28568 * 359.70338 * 6 5 4 8 8 C 1.37996 * 120.14324 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.07226 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47265 * 265.02174 * 9 8 7 11 11 O 1.21284 * 119.99466 * 0.02562 * 10 9 8 12 12 N 1.34768 * 119.99992 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63078 * 0.02562 * 12 10 9 14 14 C 1.53197 * 108.77116 * 233.58213 * 13 12 10 15 15 C 1.53037 * 109.31571 * 305.36389 * 14 13 12 16 16 C 1.53040 * 109.53725 * 61.36471 * 15 14 13 17 17 H 1.09001 * 109.49438 * 58.59102 * 16 15 14 18 18 N 1.46504 * 109.49896 * 178.65076 * 16 15 14 19 19 C 1.46500 * 119.99639 * 60.00104 * 18 16 15 20 20 C 1.36940 * 120.00064 * 240.00659 * 18 16 15 21 21 H 1.08000 * 119.99600 * 324.56380 * 20 18 16 22 22 C 1.38807 * 119.99896 * 144.56397 * 20 18 16 23 23 N 1.31622 * 119.99641 * 157.65501 * 22 20 18 24 24 Si 1.86792 * 120.00295 * 337.65404 * 22 20 18 25 25 H 1.48500 * 109.47652 * 95.55997 * 24 22 20 26 26 H 1.48504 * 109.47281 * 215.56087 * 24 22 20 27 27 H 1.48499 * 109.47163 * 335.55868 * 24 22 20 28 28 C 1.46925 * 120.63198 * 179.72319 * 12 10 9 29 29 H 4.52088 * 14.02176 * 0.02562 * 4 2 1 30 30 H 1.07999 * 120.06891 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.92831 * 180.30242 * 5 4 3 32 32 H 1.08003 * 119.86054 * 179.71749 * 6 5 4 33 33 H 1.08005 * 119.92747 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47159 * 25.02681 * 9 8 7 35 35 H 1.09004 * 109.46678 * 145.02420 * 9 8 7 36 36 H 1.08993 * 109.58745 * 353.37116 * 13 12 10 37 37 H 1.09001 * 109.58446 * 113.79844 * 13 12 10 38 38 H 1.08998 * 109.50015 * 65.32023 * 14 13 12 39 39 H 1.09005 * 109.49248 * 185.41098 * 14 13 12 40 40 H 1.08996 * 109.45928 * 181.38617 * 15 14 13 41 41 H 1.09007 * 109.45888 * 301.35884 * 15 14 13 42 42 H 1.08997 * 109.47110 * 88.03078 * 19 18 16 43 43 H 1.09004 * 109.46833 * 208.03000 * 19 18 16 44 44 H 1.09000 * 109.47331 * 328.02706 * 19 18 16 45 45 H 0.96994 * 119.99936 * 180.02562 * 23 22 20 46 46 H 1.09005 * 109.58567 * 246.20459 * 28 12 10 47 47 H 1.09007 * 109.58610 * 6.62657 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3073 -1.0471 -0.5983 5 6 4.6868 -1.0375 -0.5999 6 6 5.3751 0.0019 0.0004 7 6 4.6860 1.0404 0.6002 8 6 3.3060 1.0462 0.6029 9 6 2.5568 2.1788 1.2563 10 6 2.1995 1.7956 2.6694 11 8 2.5220 0.7099 3.1032 12 7 1.5227 2.6598 3.4512 13 6 1.1257 3.9788 2.9399 14 6 1.6367 5.0551 3.9030 15 6 1.1328 4.7509 5.3156 16 6 1.6777 3.3957 5.7726 17 1 2.7673 3.4156 5.7506 18 7 1.2211 3.1200 7.1371 19 6 -0.2125 3.0408 7.4278 20 6 2.1345 2.9365 8.1408 21 1 3.0705 2.4387 7.9346 22 6 1.8572 3.3902 9.4229 23 7 2.4775 2.8616 10.4565 24 14 0.6039 4.7509 9.6816 25 1 -0.7169 4.1529 10.0028 26 1 1.0405 5.6190 10.8046 27 1 0.4918 5.5626 8.4432 28 6 1.1619 2.2984 4.8288 29 1 -1.0500 -0.0006 -0.0009 30 1 2.7712 -1.8611 -1.0633 31 1 5.2307 -1.8454 -1.0668 32 1 6.4551 0.0024 0.0005 33 1 5.2291 1.8491 1.0668 34 1 3.1844 3.0700 1.2691 35 1 1.6458 2.3839 0.6941 36 1 1.5616 4.1346 1.9532 37 1 0.0390 4.0334 2.8744 38 1 2.7267 5.0594 3.8986 39 1 1.2674 6.0308 3.5872 40 1 1.4746 5.5286 5.9984 41 1 0.0431 4.7221 5.3141 42 1 -0.5599 2.0202 7.2675 43 1 -0.3893 3.3262 8.4649 44 1 -0.7551 3.7172 6.7673 45 1 2.2836 3.1783 11.3525 46 1 0.0781 2.2189 4.9138 47 1 1.6218 1.3449 5.0888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027664104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:35 Heat of formation + Delta-G solvation = 53.335122 kcal Electronic energy + Delta-G solvation = -27637.090204 eV Core-core repulsion = 23979.287268 eV Total energy + Delta-G solvation = -3657.802936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47275 -40.17970 -38.85919 -36.86110 -34.89431 -34.20895 -33.61335 -33.07672 -31.24359 -31.03622 -28.81552 -28.08425 -26.16038 -25.39272 -24.22108 -23.09852 -22.81555 -21.06081 -20.03052 -19.53087 -18.92128 -18.25936 -17.47105 -17.30039 -16.89009 -16.64315 -16.18553 -15.93044 -15.63883 -15.34271 -15.28396 -14.94196 -14.60425 -14.42306 -14.23482 -14.11992 -14.05325 -14.00450 -13.68657 -13.64215 -13.05526 -12.93308 -12.61300 -12.40361 -12.19867 -12.16511 -12.09350 -12.08138 -11.85509 -11.79729 -11.67906 -11.36672 -11.32971 -10.93949 -10.68913 -9.78233 -9.70907 -9.40462 -8.80615 -8.23297 -5.61604 -0.00661 0.38903 1.29532 1.40287 1.53088 1.62845 1.77461 1.98541 2.10976 2.39825 2.99382 3.02666 3.31462 3.39328 3.59336 3.73666 3.88071 3.96959 4.07527 4.09433 4.15292 4.20358 4.29976 4.35060 4.44213 4.48962 4.53848 4.59556 4.65776 4.67554 4.76066 4.78251 4.85830 4.87677 4.96189 5.01920 5.07450 5.15888 5.18645 5.40911 5.46712 5.47388 5.50771 5.53505 5.55939 5.87535 6.01388 6.11388 6.45761 6.58259 6.92131 7.19466 7.57881 7.97198 8.96988 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.002961 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.192356 B = 9452.433252 C = 9831.637980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.186 4.186 3 C -0.004 4.004 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.062 4.062 9 C -0.092 4.092 10 C 0.511 3.489 11 O -0.586 6.586 12 N -0.607 5.607 13 C 0.103 3.897 14 C -0.124 4.124 15 C -0.130 4.130 16 C 0.168 3.832 17 H 0.042 0.958 18 N -0.616 5.616 19 C 0.106 3.894 20 C -0.266 4.266 21 H 0.030 0.970 22 C -0.026 4.026 23 N -0.953 5.953 24 Si 0.960 3.040 25 H -0.274 1.274 26 H -0.310 1.310 27 H -0.248 1.248 28 C 0.115 3.885 29 H 0.256 0.744 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.019 0.981 43 H 0.029 0.971 44 H 0.070 0.930 45 H 0.264 0.736 46 H 0.071 0.929 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 2.828 -28.441 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.186 4.186 3 C -0.004 4.004 4 C -0.130 4.130 5 C -0.140 4.140 6 C -0.132 4.132 7 C -0.138 4.138 8 C -0.063 4.063 9 C -0.132 4.132 10 C 0.300 3.700 11 O -0.466 6.466 12 N -0.340 5.340 13 C -0.019 4.019 14 C -0.162 4.162 15 C -0.169 4.169 16 C 0.061 3.939 17 H 0.060 0.940 18 N -0.340 5.340 19 C -0.037 4.037 20 C -0.396 4.396 21 H 0.048 0.952 22 C -0.222 4.222 23 N -0.597 5.597 24 Si 0.788 3.212 25 H -0.201 1.201 26 H -0.239 1.239 27 H -0.172 1.172 28 C -0.010 4.010 29 H 0.272 0.728 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.038 0.962 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.121 2.265 -28.055 28.319 hybrid contribution -0.305 -0.030 1.321 1.356 sum -3.426 2.235 -26.734 27.045 Atomic orbital electron populations 1.25700 0.96515 0.97623 0.98247 1.20426 0.92754 1.02891 1.02501 1.16120 0.87165 0.96218 1.00917 1.21420 0.95131 0.97321 0.99137 1.21416 0.93520 0.99390 0.99664 1.21593 1.01478 0.93523 0.96654 1.21261 0.92887 1.00267 0.99403 1.19597 0.94162 0.95303 0.97225 1.20744 1.03157 0.98664 0.90592 1.21126 0.76756 0.83722 0.88376 1.90709 1.55269 1.24692 1.75953 1.48252 1.55726 1.17496 1.12517 1.22136 1.01609 0.79563 0.98544 1.21902 1.01285 0.99825 0.93218 1.22004 1.01227 0.96419 0.97289 1.20885 0.96801 0.93376 0.82888 0.93965 1.44108 1.01682 1.83515 1.04713 1.21422 0.84204 0.99165 0.98952 1.18640 1.00153 1.31585 0.89192 0.95248 1.26133 1.00884 1.00141 0.95059 1.70026 1.47753 1.43032 0.98876 0.85628 0.78133 0.80036 0.77358 1.20106 1.23894 1.17210 1.21920 0.99631 0.98452 0.81001 0.72830 0.84691 0.82922 0.83176 0.84257 0.84745 0.86161 0.86468 0.89312 0.92021 0.87343 0.93224 0.91028 0.96238 0.95276 0.91123 0.92688 0.91057 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 19.25 74.32 1.43 -1.77 16 2 C -0.19 -4.58 11.80 30.01 0.35 -4.22 16 3 C 0.00 -0.11 5.72 -21.41 -0.12 -0.23 16 4 C -0.11 -2.44 9.75 22.52 0.22 -2.22 16 5 C -0.12 -2.22 10.03 22.23 0.22 -2.00 16 6 C -0.11 -2.11 10.04 22.32 0.22 -1.89 16 7 C -0.12 -2.57 9.67 22.23 0.21 -2.35 16 8 C -0.06 -1.51 4.41 -19.61 -0.09 -1.59 16 9 C -0.09 -1.90 3.69 29.10 0.11 -1.79 16 10 C 0.51 15.54 7.69 87.66 0.67 16.21 16 11 O -0.59 -24.44 15.45 -3.04 -0.05 -24.48 16 12 N -0.61 -16.91 2.97 -818.00 -2.43 -19.33 16 13 C 0.10 1.76 6.34 86.36 0.55 2.31 16 14 C -0.12 -2.42 6.08 30.67 0.19 -2.23 16 15 C -0.13 -3.86 5.11 30.62 0.16 -3.70 16 16 C 0.17 6.61 2.76 45.22 0.12 6.73 16 17 H 0.04 1.90 7.89 -2.39 -0.02 1.88 16 18 N -0.62 -29.61 2.42 -701.47 -1.69 -31.31 16 19 C 0.11 4.47 8.45 127.77 1.08 5.55 16 20 C -0.27 -15.80 9.85 84.03 0.83 -14.97 16 21 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 22 C -0.03 -1.56 5.31 84.86 0.45 -1.11 16 23 N -0.95 -61.38 13.97 21.65 0.30 -61.07 16 24 Si 0.96 46.39 24.94 68.60 1.71 48.10 16 25 H -0.27 -12.54 6.67 99.48 0.66 -11.87 16 26 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 27 H -0.25 -11.03 7.11 99.48 0.71 -10.33 16 28 C 0.11 4.15 5.81 86.52 0.50 4.65 16 29 H 0.26 2.68 7.80 -4.42 -0.03 2.65 16 30 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.13 1.86 7.60 -2.38 -0.02 1.85 16 35 H 0.12 1.98 7.08 -2.39 -0.02 1.96 16 36 H 0.12 1.20 5.93 -2.39 -0.01 1.19 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 1.92 6.73 -2.38 -0.02 1.91 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.03 1.32 3.08 -2.39 -0.01 1.31 16 44 H 0.07 2.39 6.46 -2.39 -0.02 2.38 16 45 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 46 H 0.07 2.39 7.53 -2.38 -0.02 2.37 16 47 H 0.05 2.12 7.00 -2.38 -0.02 2.10 16 Total: -1.00 -83.66 378.80 5.88 -77.78 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.92 Total: 14.95 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 7.11 Total: -4.63 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -3.82 Total: -111.71 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.48 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.71 Total: 48.10 kcal Total: -83.66 5.88 -77.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027664104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.113 kcal (2) G-P(sol) polarization free energy of solvation -83.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds