Wall clock time and date at job start Tue Mar 31 2020 14:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34775 * 120.00067 * 2 1 4 4 O 1.21280 * 119.99589 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00067 * 0.02562 * 3 2 1 6 6 H 1.08998 * 115.53707 * 325.80563 * 5 3 2 7 7 C 1.54986 * 117.91340 * 180.08617 * 5 3 2 8 8 H 1.08998 * 120.17037 * 141.45148 * 7 5 3 9 9 C 1.53445 * 118.66265 * 343.52009 * 7 5 3 10 10 C 1.50968 * 107.20544 * 297.87152 * 9 7 5 11 11 C 1.38789 * 129.71954 * 179.56903 * 10 9 7 12 12 C 1.38019 * 120.30873 * 180.02562 * 11 10 9 13 13 C 1.38252 * 119.88051 * 0.02562 * 12 11 10 14 14 C 1.38020 * 119.88487 * 359.97438 * 13 12 11 15 15 C 1.37800 * 110.46583 * 359.57055 * 10 9 7 16 16 C 1.50945 * 110.48126 * 359.94222 * 15 10 9 17 17 H 1.09001 * 117.16906 * 221.02396 * 16 15 10 18 18 C 1.46504 * 119.99786 * 180.02562 * 2 1 3 19 19 H 1.09000 * 110.63962 * 178.31201 * 18 2 1 20 20 C 1.55161 * 110.71971 * 54.97451 * 18 2 1 21 21 C 1.54911 * 101.58079 * 277.13642 * 20 18 2 22 22 N 1.47429 * 104.83297 * 322.99709 * 21 20 18 23 23 C 1.36934 * 125.64527 * 204.16695 * 22 21 20 24 24 H 1.08002 * 120.00181 * 179.97438 * 23 22 21 25 25 C 1.38815 * 120.00160 * 359.95408 * 23 22 21 26 26 N 1.31622 * 119.99914 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99997 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47618 * 89.99795 * 27 25 23 29 29 H 1.48503 * 109.46993 * 209.99598 * 27 25 23 30 30 H 1.48502 * 109.47146 * 329.99338 * 27 25 23 31 31 C 1.47016 * 108.70438 * 24.12176 * 22 21 20 32 32 H 1.09003 * 109.47157 * 89.99963 * 1 2 3 33 33 H 1.08999 * 109.46943 * 209.99750 * 1 2 3 34 34 H 1.08996 * 109.46912 * 329.99498 * 1 2 3 35 35 H 1.09002 * 109.92215 * 178.42269 * 9 7 5 36 36 H 1.09002 * 109.92187 * 57.31819 * 9 7 5 37 37 H 1.07999 * 119.84918 * 0.02921 * 11 10 9 38 38 H 1.07996 * 120.06190 * 180.02562 * 12 11 10 39 39 H 1.07998 * 120.05586 * 179.97438 * 13 12 11 40 40 H 1.07994 * 119.84118 * 180.02562 * 14 13 12 41 41 H 1.08997 * 111.00788 * 35.21218 * 20 18 2 42 42 H 1.08998 * 111.00060 * 159.06630 * 20 18 2 43 43 H 1.08993 * 110.36892 * 204.15244 * 21 20 18 44 44 H 1.09000 * 110.45583 * 81.87586 * 21 20 18 45 45 H 0.96996 * 119.99622 * 180.02562 * 26 25 23 46 46 H 1.09001 * 109.88776 * 239.52559 * 31 22 21 47 47 H 1.09008 * 109.88089 * 118.36211 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 1 0.4458 2.4726 -0.5518 7 6 2.2088 3.7854 -0.0015 8 1 1.8744 4.6407 -0.5886 9 6 3.6943 3.7233 0.3780 10 6 3.7709 3.2321 1.8035 11 6 4.8813 2.9983 2.6025 12 6 4.7252 2.5432 3.8961 13 6 3.4571 2.3185 4.3989 14 6 2.3517 2.5505 3.6056 15 6 2.5068 3.0091 2.3048 16 6 1.4616 3.3307 1.2643 17 1 0.5667 3.8529 1.6026 18 6 2.1975 -1.2688 -0.0006 19 1 3.2726 -1.0918 -0.0305 20 6 1.7506 -2.1601 -1.1894 21 6 0.4718 -2.8221 -0.6183 22 7 0.7744 -3.0624 0.8045 23 6 0.1821 -4.0085 1.5976 24 1 0.4751 -4.1061 2.6325 25 6 -0.7955 -4.8420 1.0716 26 7 -1.1533 -4.7225 -0.1894 27 14 -1.6040 -6.1322 2.1537 28 1 -2.8037 -5.5495 2.8067 29 1 -2.0086 -7.2935 1.3213 30 1 -0.6426 -6.5794 3.1934 31 6 1.8182 -2.1188 1.2304 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5139 35 1 4.1386 4.7158 0.3027 36 1 4.2176 3.0313 -0.2819 37 1 5.8722 3.1733 2.2103 38 1 5.5920 2.3630 4.5145 39 1 3.3317 1.9620 5.4106 40 1 1.3615 2.3751 3.9992 41 1 1.5192 -1.5551 -2.0660 42 1 2.5075 -2.9091 -1.4222 43 1 0.2723 -3.7645 -1.1282 44 1 -0.3811 -2.1505 -0.7164 45 1 -1.8367 -5.3047 -0.5568 46 1 2.6909 -2.6668 1.5856 47 1 1.4350 -1.4745 2.0219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033484924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:21 Heat of formation + Delta-G solvation = 69.762956 kcal Electronic energy + Delta-G solvation = -28558.471387 eV Core-core repulsion = 24901.380816 eV Total energy + Delta-G solvation = -3657.090571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20364 -39.27827 -37.59209 -36.35671 -34.35050 -32.20436 -31.60026 -30.47451 -29.24044 -28.02239 -27.70097 -26.10614 -24.87946 -23.89764 -22.53687 -21.26559 -20.42798 -20.18070 -19.70922 -18.31456 -17.32919 -16.94904 -16.16056 -15.78758 -15.58610 -14.96555 -14.74633 -14.68619 -14.47236 -13.78156 -13.73822 -13.43842 -13.12976 -12.99201 -12.68425 -12.48384 -12.21324 -12.12622 -12.05157 -11.80275 -11.72985 -11.55263 -11.25410 -11.07033 -10.89510 -10.82852 -10.78730 -10.62883 -10.31718 -10.13788 -10.06862 -9.85644 -9.54361 -9.18145 -8.66464 -8.65525 -8.45794 -8.13982 -6.85617 -5.67682 -3.09352 1.35727 1.48883 2.68679 3.26012 3.38283 3.43964 3.45558 3.55129 3.87420 4.30533 4.43877 4.47466 4.65523 4.83496 4.95051 5.05567 5.07279 5.13703 5.34632 5.43579 5.44916 5.47054 5.52232 5.57686 5.58971 5.70254 5.74300 5.78083 5.83774 5.88824 5.96008 5.98840 6.13737 6.25635 6.30046 6.33705 6.40609 6.49515 6.56606 6.58303 6.63889 6.71919 6.74824 7.06221 7.09650 7.46351 7.61064 7.79941 7.84359 8.33529 8.51447 9.19877 9.80336 10.45143 11.35827 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.003530 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.803268 B = 7929.359022 C = 8636.585337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.590 5.590 3 C 0.541 3.459 4 O -0.540 6.540 5 C -0.153 4.153 6 H 0.132 0.868 7 C -0.124 4.124 8 H 0.129 0.871 9 C -0.059 4.059 10 C -0.056 4.056 11 C -0.111 4.111 12 C -0.114 4.114 13 C -0.129 4.129 14 C -0.095 4.095 15 C -0.082 4.082 16 C -0.096 4.096 17 H 0.122 0.878 18 C 0.128 3.872 19 H 0.098 0.902 20 C -0.154 4.154 21 C 0.145 3.855 22 N -0.602 5.602 23 C -0.221 4.221 24 H 0.076 0.924 25 C -0.010 4.010 26 N -0.922 5.922 27 Si 0.913 3.087 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.282 1.282 31 C 0.128 3.872 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.021 0.979 45 H 0.252 0.748 46 H 0.031 0.969 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.325 18.659 1.341 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.321 5.321 3 C 0.329 3.671 4 O -0.418 6.418 5 C -0.173 4.173 6 H 0.150 0.850 7 C -0.143 4.143 8 H 0.147 0.853 9 C -0.095 4.095 10 C -0.056 4.056 11 C -0.129 4.129 12 C -0.132 4.132 13 C -0.147 4.147 14 C -0.113 4.113 15 C -0.082 4.082 16 C -0.115 4.115 17 H 0.140 0.860 18 C 0.025 3.975 19 H 0.116 0.884 20 C -0.194 4.194 21 C 0.021 3.979 22 N -0.329 5.329 23 C -0.350 4.350 24 H 0.094 0.906 25 C -0.205 4.205 26 N -0.571 5.571 27 Si 0.744 3.256 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 C 0.001 3.999 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.123 0.877 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.805 18.471 1.343 19.731 hybrid contribution -0.786 -0.806 0.625 1.288 sum 6.020 17.665 1.968 18.766 Atomic orbital electron populations 1.22071 0.79329 1.04105 1.01706 1.47714 1.07209 1.05328 1.71864 1.19558 0.87323 0.84158 0.76078 1.90606 1.13647 1.86967 1.50573 1.22689 1.01748 0.90539 1.02370 0.84990 1.23290 0.94003 0.96397 1.00587 0.85287 1.20380 0.94676 1.01207 0.93241 1.20321 0.93101 0.97296 0.94856 1.20566 0.97743 1.00785 0.93848 1.20986 0.97257 0.99452 0.95529 1.20950 0.92503 1.01409 0.99852 1.20646 0.98950 0.98729 0.92970 1.19572 0.93670 1.01144 0.93825 1.21499 0.99810 1.02470 0.87685 0.85970 1.22094 0.96355 0.82166 0.96910 0.88449 1.23343 1.01523 0.98243 0.96275 1.22113 0.90518 1.00630 0.84680 1.44538 1.42721 1.37618 1.08011 1.19074 1.14805 1.08269 0.92827 0.90579 1.24758 0.99396 0.99864 0.96486 1.69800 1.34011 1.41165 1.12103 0.86090 0.79289 0.81057 0.79170 1.21674 1.21675 1.20736 1.21620 0.92641 0.91369 0.94225 0.92929 0.88035 0.92222 0.90648 0.87505 0.86481 0.86132 0.86063 0.86449 0.92122 0.91156 0.87733 0.96075 0.93767 0.95163 0.95618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 8.10 59.85 0.48 1.60 16 2 N -0.59 -10.05 2.82 -171.83 -0.49 -10.54 16 3 C 0.54 8.79 6.77 -10.99 -0.07 8.72 16 4 O -0.54 -9.98 12.09 5.56 0.07 -9.91 16 5 C -0.15 -1.88 4.83 -90.74 -0.44 -2.32 16 6 H 0.13 1.34 7.25 -51.93 -0.38 0.97 16 7 C -0.12 -1.33 7.17 -88.89 -0.64 -1.97 16 8 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 9 C -0.06 -0.70 5.76 -27.52 -0.16 -0.86 16 10 C -0.06 -0.76 4.89 -104.45 -0.51 -1.27 16 11 C -0.11 -1.44 10.04 -39.46 -0.40 -1.84 16 12 C -0.11 -1.39 10.05 -39.66 -0.40 -1.79 16 13 C -0.13 -1.61 10.05 -39.66 -0.40 -2.01 16 14 C -0.09 -1.26 10.04 -39.46 -0.40 -1.66 16 15 C -0.08 -1.12 5.25 -104.46 -0.55 -1.67 16 16 C -0.10 -1.11 6.79 -91.23 -0.62 -1.73 16 17 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 18 C 0.13 2.44 3.58 -66.09 -0.24 2.21 16 19 H 0.10 1.89 6.99 -51.93 -0.36 1.53 16 20 C -0.15 -2.99 6.53 -24.58 -0.16 -3.15 16 21 C 0.15 3.38 5.00 -2.53 -0.01 3.37 16 22 N -0.60 -15.03 2.97 -170.07 -0.50 -15.53 16 23 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 24 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 25 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 26 N -0.92 -26.12 10.09 55.49 0.56 -25.56 16 27 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 31 C 0.13 2.78 6.24 -3.07 -0.02 2.76 16 32 H 0.05 0.77 7.99 -51.93 -0.41 0.35 16 33 H 0.10 1.97 5.19 -51.93 -0.27 1.70 16 34 H 0.06 0.78 6.64 -51.93 -0.34 0.44 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 1.49 6.36 -51.93 -0.33 1.16 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.10 2.79 5.87 -51.93 -0.31 2.49 16 44 H 0.02 0.50 5.54 -51.93 -0.29 0.22 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.03 0.58 8.04 -51.92 -0.42 0.16 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -31.11 362.81 -11.57 -42.68 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.88 Total: 4.83 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -4.77 Total: -8.19 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.43 Total: -51.63 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.11 -11.57 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033484924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.446 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds