Wall clock time and date at job start Tue Mar 31 2020 14:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34775 * 120.00067 * 2 1 4 4 O 1.21280 * 119.99589 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00067 * 0.02562 * 3 2 1 6 6 H 1.08998 * 115.53707 * 325.80563 * 5 3 2 7 7 C 1.54986 * 117.91340 * 180.08617 * 5 3 2 8 8 H 1.08998 * 120.17037 * 141.45148 * 7 5 3 9 9 C 1.53445 * 118.66265 * 343.52009 * 7 5 3 10 10 C 1.50968 * 107.20544 * 297.87152 * 9 7 5 11 11 C 1.38789 * 129.71954 * 179.56903 * 10 9 7 12 12 C 1.38019 * 120.30873 * 180.02562 * 11 10 9 13 13 C 1.38252 * 119.88051 * 0.02562 * 12 11 10 14 14 C 1.38020 * 119.88487 * 359.97438 * 13 12 11 15 15 C 1.37800 * 110.46583 * 359.57055 * 10 9 7 16 16 C 1.50945 * 110.48126 * 359.94222 * 15 10 9 17 17 H 1.09001 * 117.16906 * 221.02396 * 16 15 10 18 18 C 1.46504 * 119.99786 * 180.02562 * 2 1 3 19 19 H 1.09000 * 110.63962 * 178.31201 * 18 2 1 20 20 C 1.55161 * 110.71971 * 54.97451 * 18 2 1 21 21 C 1.54911 * 101.58079 * 277.13642 * 20 18 2 22 22 N 1.47429 * 104.83297 * 322.99709 * 21 20 18 23 23 C 1.36934 * 125.64527 * 204.16695 * 22 21 20 24 24 H 1.08002 * 120.00181 * 179.97438 * 23 22 21 25 25 C 1.38815 * 120.00160 * 359.95408 * 23 22 21 26 26 N 1.31622 * 119.99914 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99997 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47618 * 89.99795 * 27 25 23 29 29 H 1.48503 * 109.46993 * 209.99598 * 27 25 23 30 30 H 1.48502 * 109.47146 * 329.99338 * 27 25 23 31 31 C 1.47016 * 108.70438 * 24.12176 * 22 21 20 32 32 H 1.09003 * 109.47157 * 89.99963 * 1 2 3 33 33 H 1.08999 * 109.46943 * 209.99750 * 1 2 3 34 34 H 1.08996 * 109.46912 * 329.99498 * 1 2 3 35 35 H 1.09002 * 109.92215 * 178.42269 * 9 7 5 36 36 H 1.09002 * 109.92187 * 57.31819 * 9 7 5 37 37 H 1.07999 * 119.84918 * 0.02921 * 11 10 9 38 38 H 1.07996 * 120.06190 * 180.02562 * 12 11 10 39 39 H 1.07998 * 120.05586 * 179.97438 * 13 12 11 40 40 H 1.07994 * 119.84118 * 180.02562 * 14 13 12 41 41 H 1.08997 * 111.00788 * 35.21218 * 20 18 2 42 42 H 1.08998 * 111.00060 * 159.06630 * 20 18 2 43 43 H 1.08993 * 110.36892 * 204.15244 * 21 20 18 44 44 H 1.09000 * 110.45583 * 81.87586 * 21 20 18 45 45 H 0.96996 * 119.99622 * 180.02562 * 26 25 23 46 46 H 1.09001 * 109.88776 * 239.52559 * 31 22 21 47 47 H 1.09008 * 109.88089 * 118.36211 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 1 0.4458 2.4726 -0.5518 7 6 2.2088 3.7854 -0.0015 8 1 1.8744 4.6407 -0.5886 9 6 3.6943 3.7233 0.3780 10 6 3.7709 3.2321 1.8035 11 6 4.8813 2.9983 2.6025 12 6 4.7252 2.5432 3.8961 13 6 3.4571 2.3185 4.3989 14 6 2.3517 2.5505 3.6056 15 6 2.5068 3.0091 2.3048 16 6 1.4616 3.3307 1.2643 17 1 0.5667 3.8529 1.6026 18 6 2.1975 -1.2688 -0.0006 19 1 3.2726 -1.0918 -0.0305 20 6 1.7506 -2.1601 -1.1894 21 6 0.4718 -2.8221 -0.6183 22 7 0.7744 -3.0624 0.8045 23 6 0.1821 -4.0085 1.5976 24 1 0.4751 -4.1061 2.6325 25 6 -0.7955 -4.8420 1.0716 26 7 -1.1533 -4.7225 -0.1894 27 14 -1.6040 -6.1322 2.1537 28 1 -2.8037 -5.5495 2.8067 29 1 -2.0086 -7.2935 1.3213 30 1 -0.6426 -6.5794 3.1934 31 6 1.8182 -2.1188 1.2304 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5139 35 1 4.1386 4.7158 0.3027 36 1 4.2176 3.0313 -0.2819 37 1 5.8722 3.1733 2.2103 38 1 5.5920 2.3630 4.5145 39 1 3.3317 1.9620 5.4106 40 1 1.3615 2.3751 3.9992 41 1 1.5192 -1.5551 -2.0660 42 1 2.5075 -2.9091 -1.4222 43 1 0.2723 -3.7645 -1.1282 44 1 -0.3811 -2.1505 -0.7164 45 1 -1.8367 -5.3047 -0.5568 46 1 2.6909 -2.6668 1.5856 47 1 1.4350 -1.4745 2.0219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033484924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:20 Heat of formation + Delta-G solvation = 54.665606 kcal Electronic energy + Delta-G solvation = -28559.126058 eV Core-core repulsion = 24901.380816 eV Total energy + Delta-G solvation = -3657.745241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21429 -40.59995 -38.97568 -37.46535 -35.92394 -34.00058 -32.62130 -31.49739 -31.01519 -29.65787 -28.62899 -27.56809 -26.48424 -25.27924 -23.56087 -22.30868 -22.04921 -21.30617 -21.06084 -19.60314 -18.93034 -18.47243 -17.38766 -16.88894 -16.73674 -16.59733 -16.10925 -15.89642 -15.65832 -15.45732 -15.09102 -14.47074 -14.36525 -14.18650 -13.90833 -13.75952 -13.69536 -13.48565 -13.33775 -13.23915 -13.16581 -12.94998 -12.77889 -12.66027 -12.41773 -12.17703 -12.03730 -11.93414 -11.81310 -11.70738 -11.53998 -11.42776 -11.06276 -10.70241 -10.39897 -9.63738 -9.62061 -9.32164 -8.87828 -7.76489 -5.20556 0.40113 0.52078 1.47852 1.48681 1.53818 1.57505 1.99798 2.49774 2.58534 2.94017 3.33536 3.36363 3.55558 3.60610 3.72402 3.89879 3.93608 4.00945 4.06049 4.16385 4.18696 4.26514 4.28693 4.34667 4.54940 4.59620 4.61524 4.67586 4.69373 4.72266 4.82695 4.86700 4.91451 4.93510 5.00119 5.02444 5.09939 5.12969 5.22482 5.39523 5.45650 5.55287 5.58760 5.61544 5.68356 5.76244 5.83058 6.13869 6.31625 6.52237 7.11989 7.24868 7.77167 8.41491 9.24573 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.003530 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.803268 B = 7929.359022 C = 8636.585337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.595 5.595 3 C 0.535 3.465 4 O -0.566 6.566 5 C -0.162 4.162 6 H 0.160 0.840 7 C -0.109 4.109 8 H 0.167 0.833 9 C -0.061 4.061 10 C -0.076 4.076 11 C -0.129 4.129 12 C -0.122 4.122 13 C -0.141 4.141 14 C -0.114 4.114 15 C -0.102 4.102 16 C -0.096 4.096 17 H 0.149 0.851 18 C 0.142 3.858 19 H 0.095 0.905 20 C -0.139 4.139 21 C 0.153 3.847 22 N -0.617 5.617 23 C -0.240 4.240 24 H 0.074 0.926 25 C -0.057 4.057 26 N -0.943 5.943 27 Si 0.976 3.024 28 H -0.285 1.285 29 H -0.293 1.293 30 H -0.275 1.275 31 C 0.132 3.868 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.018 0.982 45 H 0.248 0.752 46 H 0.024 0.976 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 20.537 1.292 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.326 5.326 3 C 0.325 3.675 4 O -0.446 6.446 5 C -0.183 4.183 6 H 0.178 0.822 7 C -0.127 4.127 8 H 0.184 0.816 9 C -0.098 4.098 10 C -0.076 4.076 11 C -0.147 4.147 12 C -0.140 4.140 13 C -0.159 4.159 14 C -0.132 4.132 15 C -0.102 4.102 16 C -0.114 4.114 17 H 0.167 0.833 18 C 0.037 3.963 19 H 0.113 0.887 20 C -0.178 4.178 21 C 0.028 3.972 22 N -0.343 5.343 23 C -0.369 4.369 24 H 0.092 0.908 25 C -0.250 4.250 26 N -0.592 5.592 27 Si 0.805 3.195 28 H -0.212 1.212 29 H -0.219 1.219 30 H -0.200 1.200 31 C 0.006 3.994 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.143 0.857 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.036 0.964 45 H 0.058 0.942 46 H 0.042 0.958 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.359 20.377 1.298 21.385 hybrid contribution -0.557 -1.384 0.699 1.647 sum 5.802 18.993 1.997 19.959 Atomic orbital electron populations 1.22010 0.78449 1.03634 1.02403 1.47766 1.07659 1.04879 1.72307 1.20289 0.87284 0.85011 0.74869 1.90604 1.15047 1.87423 1.51501 1.22778 1.02901 0.88745 1.03861 0.82241 1.23533 0.92822 0.96240 1.00137 0.81568 1.20425 0.95821 1.01712 0.91797 1.20679 0.93437 0.97630 0.95823 1.20890 0.98443 1.01027 0.94367 1.21310 0.98055 0.98965 0.95689 1.21268 0.92590 1.01268 1.00740 1.20924 0.99664 0.99156 0.93433 1.19939 0.94560 1.01259 0.94424 1.21653 1.00466 1.02137 0.87171 0.83348 1.21765 0.96426 0.82980 0.95120 0.88711 1.23184 0.99436 0.98252 0.96931 1.21900 0.92296 0.99109 0.83872 1.44715 1.43185 1.37787 1.08635 1.19355 1.15255 1.09063 0.93212 0.90840 1.25501 1.00042 1.01701 0.97755 1.70027 1.34187 1.41700 1.13314 0.85117 0.78331 0.78442 0.77635 1.21232 1.21893 1.20003 1.21629 0.91446 0.91036 0.95333 0.91606 0.91881 0.89213 0.88394 0.89791 0.85365 0.84049 0.84398 0.85656 0.90055 0.91134 0.91194 0.96438 0.94242 0.95820 0.96383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 8.10 127.77 1.04 3.36 16 2 N -0.59 -19.59 2.82 -815.93 -2.30 -21.89 16 3 C 0.54 16.56 6.77 87.66 0.59 17.16 16 4 O -0.57 -20.55 12.09 -3.03 -0.04 -20.59 16 5 C -0.16 -3.50 4.83 -10.87 -0.05 -3.55 16 6 H 0.16 2.54 7.25 -2.39 -0.02 2.52 16 7 C -0.11 -1.97 7.17 -9.67 -0.07 -2.03 16 8 H 0.17 1.75 8.14 -2.39 -0.02 1.73 16 9 C -0.06 -1.35 5.76 30.08 0.17 -1.18 16 10 C -0.08 -1.99 4.89 -19.75 -0.10 -2.08 16 11 C -0.13 -3.28 10.04 22.35 0.22 -3.06 16 12 C -0.12 -2.90 10.05 22.22 0.22 -2.68 16 13 C -0.14 -3.41 10.05 22.22 0.22 -3.19 16 14 C -0.11 -2.93 10.04 22.35 0.22 -2.71 16 15 C -0.10 -2.63 5.25 -19.76 -0.10 -2.74 16 16 C -0.10 -1.94 6.79 -11.19 -0.08 -2.01 16 17 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 18 C 0.14 5.37 3.58 46.18 0.17 5.53 16 19 H 0.09 3.68 6.99 -2.39 -0.02 3.66 16 20 C -0.14 -5.33 6.53 31.99 0.21 -5.12 16 21 C 0.15 7.23 5.00 86.86 0.43 7.67 16 22 N -0.62 -31.40 2.97 -691.99 -2.05 -33.45 16 23 C -0.24 -13.36 10.27 84.03 0.86 -12.50 16 24 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 25 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 26 N -0.94 -54.35 10.09 21.65 0.22 -54.13 16 27 Si 0.98 45.07 29.55 68.60 2.03 47.09 16 28 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 29 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 30 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 31 C 0.13 5.81 6.24 86.73 0.54 6.35 16 32 H 0.07 1.79 7.99 -2.39 -0.02 1.77 16 33 H 0.06 2.43 5.19 -2.39 -0.01 2.42 16 34 H 0.09 2.12 6.64 -2.39 -0.02 2.10 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 2.28 6.36 -2.39 -0.02 2.26 16 37 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.08 2.78 8.14 -2.39 -0.02 2.77 16 42 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 44 H 0.02 0.85 5.54 -2.39 -0.01 0.83 16 45 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.02 0.83 8.04 -2.38 -0.02 0.81 16 Total: -1.00 -68.61 362.81 3.80 -64.81 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.97 Total: 23.62 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 4.98 Total: -5.47 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -4.14 Total: -109.47 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.04 Total: -20.59 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -68.61 3.80 -64.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033484924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.474 kcal (2) G-P(sol) polarization free energy of solvation -68.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds