Wall clock time and date at job start Tue Mar 31 2020 14:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 120.00474 * 2 1 4 4 O 1.21548 * 120.00628 * 185.86658 * 3 2 1 5 5 C 1.47866 * 120.00104 * 5.86046 * 3 2 1 6 6 C 1.39672 * 120.07826 * 214.75445 * 5 3 2 7 7 C 1.38102 * 120.25450 * 179.76890 * 6 5 3 8 8 C 1.37982 * 120.17689 * 0.50030 * 7 6 5 9 9 C 1.39762 * 120.08787 * 359.76532 * 8 7 6 10 10 C 1.39028 * 120.10300 * 359.97438 * 9 8 7 11 11 C 1.47850 * 119.06768 * 179.97438 * 9 8 7 12 12 C 1.32516 * 119.47580 * 19.07043 * 11 9 8 13 13 C 1.50324 * 121.04872 * 0.42470 * 12 11 9 14 14 C 1.50611 * 120.62992 * 179.72482 * 8 7 6 15 15 C 1.46508 * 119.99808 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.91153 * 176.09739 * 15 2 1 17 17 C 1.55161 * 111.00361 * 299.99921 * 15 2 1 18 18 C 1.54322 * 102.94305 * 82.57087 * 17 15 2 19 19 N 1.47027 * 107.27094 * 22.19141 * 18 17 15 20 20 C 1.36933 * 125.64646 * 181.01781 * 19 18 17 21 21 H 1.08007 * 119.99773 * 174.90457 * 20 19 18 22 22 C 1.38807 * 120.00145 * 354.91127 * 20 19 18 23 23 N 1.31624 * 119.99724 * 214.16947 * 22 20 19 24 24 Si 1.86795 * 120.00020 * 34.45207 * 22 20 19 25 25 H 1.48504 * 109.47183 * 173.94836 * 24 22 20 26 26 H 1.48505 * 109.47241 * 293.94890 * 24 22 20 27 27 H 1.48497 * 109.47606 * 53.95072 * 24 22 20 28 28 C 1.47422 * 108.70198 * 1.28591 * 19 18 17 29 29 H 1.09004 * 109.46720 * 274.49524 * 1 2 3 30 30 H 1.08995 * 109.46850 * 34.48716 * 1 2 3 31 31 H 1.08993 * 109.47455 * 154.49251 * 1 2 3 32 32 H 1.08001 * 119.87080 * 0.02562 * 6 5 3 33 33 H 1.07997 * 119.91316 * 180.25576 * 7 6 5 34 34 H 1.08003 * 120.24154 * 179.97438 * 10 9 8 35 35 H 1.08002 * 120.25846 * 199.09530 * 11 9 8 36 36 H 1.07992 * 119.47752 * 180.44967 * 12 11 9 37 37 H 1.09006 * 109.22700 * 84.48910 * 13 12 11 38 38 H 1.09003 * 109.22897 * 203.84721 * 13 12 11 39 39 H 1.09000 * 109.41132 * 25.37048 * 14 8 7 40 40 H 1.09008 * 109.35426 * 265.55331 * 14 8 7 41 41 H 1.09004 * 110.71742 * 324.21237 * 17 15 2 42 42 H 1.08991 * 110.87132 * 201.00844 * 17 15 2 43 43 H 1.09002 * 109.88421 * 262.77685 * 18 17 15 44 44 H 1.08990 * 109.88036 * 141.60954 * 18 17 15 45 45 H 0.96994 * 120.00398 * 5.28605 * 23 22 20 46 46 H 1.09011 * 110.36916 * 94.47992 * 28 19 18 47 47 H 1.08995 * 110.36710 * 216.80123 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3497 1.1699 -0.1076 5 6 1.4055 2.4444 0.1308 6 6 1.8552 3.5820 -0.5434 7 6 1.1703 4.7756 -0.4277 8 6 0.0426 4.8543 0.3635 9 6 -0.4138 3.7241 1.0473 10 6 0.2667 2.5172 0.9320 11 6 -1.6242 3.8340 1.8893 12 6 -2.4610 4.8438 1.6994 13 6 -2.2042 5.8741 0.6353 14 6 -0.7086 6.1524 0.5019 15 6 2.1975 -1.2688 -0.0006 16 1 3.2717 -1.0978 -0.0698 17 6 1.8483 -2.1131 1.2535 18 6 0.5310 -2.8069 0.8474 19 7 0.4792 -2.8192 -0.6219 20 6 -0.5406 -3.3293 -1.3802 21 1 -0.5231 -3.2171 -2.4543 22 6 -1.5967 -3.9904 -0.7685 23 7 -2.1778 -5.0043 -1.3743 24 14 -2.1985 -3.4363 0.9108 25 1 -3.4175 -4.2012 1.2770 26 1 -1.1385 -3.6804 1.9218 27 1 -2.5179 -1.9867 0.8687 28 6 1.7098 -2.1973 -1.1436 29 1 -0.3633 0.0805 1.0246 30 1 -0.3633 0.8470 -0.5819 31 1 -0.3634 -0.9274 -0.4425 32 1 2.7396 3.5269 -1.1609 33 1 1.5206 5.6508 -0.9547 34 1 -0.0838 1.6426 1.4598 35 1 -1.8244 3.0974 2.6533 36 1 -3.3413 4.9282 2.3192 37 1 -2.5874 5.5091 -0.3177 38 1 -2.7193 6.7980 0.8983 39 1 -0.5316 6.7691 -0.3793 40 1 -0.3583 6.6796 1.3894 41 1 1.6943 -1.4705 2.1204 42 1 2.6261 -2.8497 1.4546 43 1 -0.3185 -2.2505 1.2436 44 1 0.5176 -3.8283 1.2273 45 1 -1.8203 -5.3385 -2.2117 46 1 2.4577 -2.9600 -1.3610 47 1 1.4905 -1.6142 -2.0380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033498789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:07 Heat of formation + Delta-G solvation = 53.465933 kcal Electronic energy + Delta-G solvation = -28182.200078 eV Core-core repulsion = 24524.402815 eV Total energy + Delta-G solvation = -3657.797263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.65464 -39.47970 -37.77535 -35.98954 -34.54029 -32.85006 -32.23806 -30.50905 -29.85044 -29.22129 -28.33683 -26.41197 -24.69094 -23.69534 -23.01849 -22.24892 -21.28546 -20.60977 -19.21611 -18.12666 -17.49963 -17.03394 -16.74363 -16.05162 -15.78958 -15.28799 -15.18192 -14.67423 -14.46948 -14.36612 -13.92215 -13.56368 -13.38071 -13.16310 -13.06802 -12.87781 -12.75682 -12.50627 -12.41156 -12.12988 -11.91055 -11.68142 -11.52047 -11.32085 -11.11975 -10.99118 -10.89092 -10.80860 -10.69057 -10.21259 -10.15863 -9.81501 -9.61928 -9.10346 -8.89539 -8.53491 -8.30553 -8.22644 -7.12481 -6.44026 -3.19670 0.66741 0.99991 2.18909 2.90521 3.17837 3.38952 3.45561 3.65619 3.76924 4.33343 4.39074 4.55568 4.59905 4.70630 4.76830 4.87053 4.90294 5.06780 5.10356 5.13201 5.15716 5.24802 5.36961 5.40477 5.44904 5.50358 5.54231 5.60546 5.71931 5.73385 5.82048 5.83844 5.85654 6.01094 6.07352 6.14454 6.21439 6.25156 6.27909 6.42736 6.44756 6.50721 6.58850 6.62579 6.74820 6.78564 6.92269 7.60946 7.67183 8.27751 8.30228 8.96258 9.53557 10.20087 11.03460 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.003939 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.049281 B = 7106.608966 C = 8433.434302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.585 5.585 3 C 0.557 3.443 4 O -0.547 6.547 5 C -0.127 4.127 6 C -0.062 4.062 7 C -0.126 4.126 8 C -0.059 4.059 9 C -0.066 4.066 10 C -0.074 4.074 11 C -0.118 4.118 12 C -0.146 4.146 13 C -0.093 4.093 14 C -0.081 4.081 15 C 0.120 3.880 16 H 0.107 0.893 17 C -0.141 4.141 18 C 0.118 3.882 19 N -0.606 5.606 20 C -0.347 4.347 21 H 0.080 0.920 22 C -0.006 4.006 23 N -0.900 5.900 24 Si 1.027 2.973 25 H -0.298 1.298 26 H -0.277 1.277 27 H -0.294 1.294 28 C 0.129 3.871 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.044 0.956 45 H 0.266 0.734 46 H 0.040 0.960 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 21.522 6.009 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.315 5.315 3 C 0.345 3.655 4 O -0.426 6.426 5 C -0.130 4.130 6 C -0.081 4.081 7 C -0.144 4.144 8 C -0.059 4.059 9 C -0.066 4.066 10 C -0.092 4.092 11 C -0.136 4.136 12 C -0.164 4.164 13 C -0.130 4.130 14 C -0.118 4.118 15 C 0.016 3.984 16 H 0.125 0.875 17 C -0.179 4.179 18 C -0.006 4.006 19 N -0.335 5.335 20 C -0.472 4.472 21 H 0.098 0.902 22 C -0.208 4.208 23 N -0.538 5.538 24 Si 0.858 3.142 25 H -0.226 1.226 26 H -0.204 1.204 27 H -0.222 1.222 28 C 0.003 3.997 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.383 21.169 7.009 22.426 hybrid contribution 0.958 0.240 -1.061 1.450 sum 3.341 21.409 5.948 22.470 Atomic orbital electron populations 1.22573 0.78745 1.06616 1.01094 1.47598 1.07536 1.05027 1.71355 1.18385 0.86937 0.83612 0.76525 1.90730 1.13775 1.87329 1.50772 1.19864 0.97134 0.94301 1.01697 1.21219 0.98570 0.91153 0.97146 1.20827 0.95652 0.97832 1.00108 1.20139 0.95148 0.95041 0.95575 1.18783 0.96267 0.92903 0.98680 1.21769 0.92772 0.97674 0.96974 1.21626 0.93811 0.98906 0.99223 1.23126 0.99158 0.95566 0.98561 1.20424 0.95702 0.98336 0.98495 1.20458 0.94262 0.94182 1.02851 1.22369 0.96796 0.82496 0.96724 0.87532 1.22983 0.98950 0.98797 0.97213 1.21945 0.94396 0.98236 0.86067 1.44905 1.17846 1.70660 1.00040 1.19911 1.01920 1.34221 0.91186 0.90225 1.25537 0.96719 0.94251 1.04330 1.70909 1.46251 1.18295 1.18389 0.84549 0.76099 0.75946 0.77567 1.22569 1.20407 1.22201 1.21942 0.89729 0.93358 0.94719 0.93254 0.91831 0.85901 0.85085 0.85364 0.84279 0.85865 0.86492 0.90462 0.90502 0.90155 0.90259 0.91270 0.90187 0.95521 0.93864 0.92403 0.94250 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 7.20 59.85 0.43 1.31 16 2 N -0.58 -9.98 2.91 -172.45 -0.50 -10.48 16 3 C 0.56 9.48 7.36 -12.32 -0.09 9.38 16 4 O -0.55 -10.60 16.20 5.32 0.09 -10.51 16 5 C -0.13 -1.85 5.17 -104.97 -0.54 -2.39 16 6 C -0.06 -0.80 9.60 -39.10 -0.38 -1.17 16 7 C -0.13 -1.34 9.69 -39.73 -0.38 -1.72 16 8 C -0.06 -0.62 5.68 -104.19 -0.59 -1.22 16 9 C -0.07 -0.78 5.77 -105.10 -0.61 -1.39 16 10 C -0.07 -0.97 7.57 -38.84 -0.29 -1.27 16 11 C -0.12 -1.20 9.90 -37.56 -0.37 -1.57 16 12 C -0.15 -1.25 10.02 -36.40 -0.36 -1.61 16 13 C -0.09 -0.69 6.05 -28.21 -0.17 -0.86 16 14 C -0.08 -0.62 5.95 -28.07 -0.17 -0.79 16 15 C 0.12 2.10 3.67 -65.66 -0.24 1.86 16 16 H 0.11 1.83 7.02 -51.93 -0.36 1.46 16 17 C -0.14 -2.37 6.48 -24.90 -0.16 -2.53 16 18 C 0.12 2.46 3.52 -3.06 -0.01 2.45 16 19 N -0.61 -14.04 1.85 -169.94 -0.31 -14.35 16 20 C -0.35 -9.42 9.91 -15.06 -0.15 -9.57 16 21 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 22 C -0.01 -0.16 5.42 -17.43 -0.09 -0.25 16 23 N -0.90 -27.27 13.70 55.49 0.76 -26.51 16 24 Si 1.03 24.72 25.16 -169.99 -4.28 20.44 16 25 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.13 5.10 56.52 0.29 -5.84 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 28 C 0.13 2.57 6.46 -2.41 -0.02 2.56 16 29 H 0.05 0.76 6.35 -51.93 -0.33 0.43 16 30 H 0.06 1.00 6.48 -51.93 -0.34 0.66 16 31 H 0.12 2.51 4.45 -51.93 -0.23 2.28 16 32 H 0.13 1.62 7.99 -52.49 -0.42 1.20 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.14 1.79 5.24 -52.48 -0.28 1.51 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 40 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.03 0.57 3.76 -51.93 -0.20 0.38 16 44 H 0.04 0.97 6.83 -51.93 -0.35 0.61 16 45 H 0.27 7.99 8.73 -40.82 -0.36 7.64 16 46 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -31.58 358.72 -9.89 -41.46 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.84 Total: 3.32 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -4.20 Total: -8.77 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.06 Total: -51.35 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.28 Total: 20.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.58 -9.89 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033498789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.928 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds