Wall clock time and date at job start Tue Mar 31 2020 14:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 120.00474 * 2 1 4 4 O 1.21548 * 120.00628 * 185.86658 * 3 2 1 5 5 C 1.47866 * 120.00104 * 5.86046 * 3 2 1 6 6 C 1.39672 * 120.07826 * 214.75445 * 5 3 2 7 7 C 1.38102 * 120.25450 * 179.76890 * 6 5 3 8 8 C 1.37982 * 120.17689 * 0.50030 * 7 6 5 9 9 C 1.39762 * 120.08787 * 359.76532 * 8 7 6 10 10 C 1.39028 * 120.10300 * 359.97438 * 9 8 7 11 11 C 1.47850 * 119.06768 * 179.97438 * 9 8 7 12 12 C 1.32516 * 119.47580 * 19.07043 * 11 9 8 13 13 C 1.50324 * 121.04872 * 0.42470 * 12 11 9 14 14 C 1.50611 * 120.62992 * 179.72482 * 8 7 6 15 15 C 1.46508 * 119.99808 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.91153 * 176.09739 * 15 2 1 17 17 C 1.55161 * 111.00361 * 299.99921 * 15 2 1 18 18 C 1.54322 * 102.94305 * 82.57087 * 17 15 2 19 19 N 1.47027 * 107.27094 * 22.19141 * 18 17 15 20 20 C 1.36933 * 125.64646 * 181.01781 * 19 18 17 21 21 H 1.08007 * 119.99773 * 174.90457 * 20 19 18 22 22 C 1.38807 * 120.00145 * 354.91127 * 20 19 18 23 23 N 1.31624 * 119.99724 * 214.16947 * 22 20 19 24 24 Si 1.86795 * 120.00020 * 34.45207 * 22 20 19 25 25 H 1.48504 * 109.47183 * 173.94836 * 24 22 20 26 26 H 1.48505 * 109.47241 * 293.94890 * 24 22 20 27 27 H 1.48497 * 109.47606 * 53.95072 * 24 22 20 28 28 C 1.47422 * 108.70198 * 1.28591 * 19 18 17 29 29 H 1.09004 * 109.46720 * 274.49524 * 1 2 3 30 30 H 1.08995 * 109.46850 * 34.48716 * 1 2 3 31 31 H 1.08993 * 109.47455 * 154.49251 * 1 2 3 32 32 H 1.08001 * 119.87080 * 0.02562 * 6 5 3 33 33 H 1.07997 * 119.91316 * 180.25576 * 7 6 5 34 34 H 1.08003 * 120.24154 * 179.97438 * 10 9 8 35 35 H 1.08002 * 120.25846 * 199.09530 * 11 9 8 36 36 H 1.07992 * 119.47752 * 180.44967 * 12 11 9 37 37 H 1.09006 * 109.22700 * 84.48910 * 13 12 11 38 38 H 1.09003 * 109.22897 * 203.84721 * 13 12 11 39 39 H 1.09000 * 109.41132 * 25.37048 * 14 8 7 40 40 H 1.09008 * 109.35426 * 265.55331 * 14 8 7 41 41 H 1.09004 * 110.71742 * 324.21237 * 17 15 2 42 42 H 1.08991 * 110.87132 * 201.00844 * 17 15 2 43 43 H 1.09002 * 109.88421 * 262.77685 * 18 17 15 44 44 H 1.08990 * 109.88036 * 141.60954 * 18 17 15 45 45 H 0.96994 * 120.00398 * 5.28605 * 23 22 20 46 46 H 1.09011 * 110.36916 * 94.47992 * 28 19 18 47 47 H 1.08995 * 110.36710 * 216.80123 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3497 1.1699 -0.1076 5 6 1.4055 2.4444 0.1308 6 6 1.8552 3.5820 -0.5434 7 6 1.1703 4.7756 -0.4277 8 6 0.0426 4.8543 0.3635 9 6 -0.4138 3.7241 1.0473 10 6 0.2667 2.5172 0.9320 11 6 -1.6242 3.8340 1.8893 12 6 -2.4610 4.8438 1.6994 13 6 -2.2042 5.8741 0.6353 14 6 -0.7086 6.1524 0.5019 15 6 2.1975 -1.2688 -0.0006 16 1 3.2717 -1.0978 -0.0698 17 6 1.8483 -2.1131 1.2535 18 6 0.5310 -2.8069 0.8474 19 7 0.4792 -2.8192 -0.6219 20 6 -0.5406 -3.3293 -1.3802 21 1 -0.5231 -3.2171 -2.4543 22 6 -1.5967 -3.9904 -0.7685 23 7 -2.1778 -5.0043 -1.3743 24 14 -2.1985 -3.4363 0.9108 25 1 -3.4175 -4.2012 1.2770 26 1 -1.1385 -3.6804 1.9218 27 1 -2.5179 -1.9867 0.8687 28 6 1.7098 -2.1973 -1.1436 29 1 -0.3633 0.0805 1.0246 30 1 -0.3633 0.8470 -0.5819 31 1 -0.3634 -0.9274 -0.4425 32 1 2.7396 3.5269 -1.1609 33 1 1.5206 5.6508 -0.9547 34 1 -0.0838 1.6426 1.4598 35 1 -1.8244 3.0974 2.6533 36 1 -3.3413 4.9282 2.3192 37 1 -2.5874 5.5091 -0.3177 38 1 -2.7193 6.7980 0.8983 39 1 -0.5316 6.7691 -0.3793 40 1 -0.3583 6.6796 1.3894 41 1 1.6943 -1.4705 2.1204 42 1 2.6261 -2.8497 1.4546 43 1 -0.3185 -2.2505 1.2436 44 1 0.5176 -3.8283 1.2273 45 1 -1.8203 -5.3385 -2.2117 46 1 2.4577 -2.9600 -1.3610 47 1 1.4905 -1.6142 -2.0380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033498789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:06 Heat of formation + Delta-G solvation = 36.360011 kcal Electronic energy + Delta-G solvation = -28182.941846 eV Core-core repulsion = 24524.402815 eV Total energy + Delta-G solvation = -3658.539032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80678 -40.55547 -39.23971 -36.83620 -36.05642 -34.47270 -33.38414 -31.72525 -31.10337 -30.34732 -29.70023 -27.82058 -26.05396 -25.05288 -23.95348 -23.07746 -22.63261 -22.22402 -20.52495 -19.52491 -19.10996 -18.21883 -17.77428 -17.31877 -16.85825 -16.56271 -16.42087 -15.92653 -15.56595 -15.33567 -15.30025 -15.19432 -14.81565 -14.45399 -14.26487 -13.92981 -13.71071 -13.58031 -13.46221 -13.32704 -13.22510 -13.03729 -12.93237 -12.64102 -12.49088 -12.45809 -12.29831 -11.89664 -11.87456 -11.79285 -11.41821 -11.00878 -10.98803 -10.90731 -10.46429 -9.88470 -9.77642 -9.07582 -9.03172 -8.66995 -5.34793 -0.22669 0.10241 1.36137 1.46040 1.52862 1.73093 1.74032 1.91470 2.59876 2.83511 2.93357 3.32661 3.39164 3.65399 3.70006 3.73417 3.80007 3.85598 4.10242 4.12918 4.18337 4.22201 4.27023 4.33865 4.37592 4.47062 4.52426 4.54722 4.68206 4.74218 4.75856 4.82234 4.86803 4.90860 4.94840 5.00368 5.05436 5.08420 5.17238 5.19427 5.22888 5.29630 5.41372 5.53022 5.60682 5.72837 5.85994 5.95256 6.08966 6.29756 6.82391 6.98365 7.47804 8.14427 8.81473 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.003939 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.049281 B = 7106.608966 C = 8433.434302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.587 5.587 3 C 0.558 3.442 4 O -0.576 6.576 5 C -0.150 4.150 6 C -0.076 4.076 7 C -0.121 4.121 8 C -0.060 4.060 9 C -0.072 4.072 10 C -0.083 4.083 11 C -0.148 4.148 12 C -0.130 4.130 13 C -0.097 4.097 14 C -0.080 4.080 15 C 0.129 3.871 16 H 0.114 0.886 17 C -0.126 4.126 18 C 0.113 3.887 19 N -0.618 5.618 20 C -0.332 4.332 21 H 0.046 0.954 22 C -0.059 4.059 23 N -0.940 5.940 24 Si 1.067 2.933 25 H -0.314 1.314 26 H -0.243 1.243 27 H -0.271 1.271 28 C 0.128 3.872 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.159 0.841 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.031 0.969 44 H 0.031 0.969 45 H 0.251 0.749 46 H 0.045 0.955 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 24.978 8.176 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.317 5.317 3 C 0.348 3.652 4 O -0.458 6.458 5 C -0.153 4.153 6 C -0.095 4.095 7 C -0.138 4.138 8 C -0.060 4.060 9 C -0.072 4.072 10 C -0.102 4.102 11 C -0.166 4.166 12 C -0.148 4.148 13 C -0.134 4.134 14 C -0.117 4.117 15 C 0.025 3.975 16 H 0.132 0.868 17 C -0.165 4.165 18 C -0.011 4.011 19 N -0.346 5.346 20 C -0.459 4.459 21 H 0.064 0.936 22 C -0.255 4.255 23 N -0.582 5.582 24 Si 0.893 3.107 25 H -0.242 1.242 26 H -0.168 1.168 27 H -0.197 1.197 28 C 0.002 3.998 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.146 0.854 33 H 0.176 0.824 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.294 24.659 9.182 26.413 hybrid contribution 0.990 -0.712 -1.852 2.217 sum 3.284 23.947 7.330 25.259 Atomic orbital electron populations 1.22441 0.78610 1.05029 1.02061 1.47632 1.07575 1.05038 1.71437 1.18776 0.86687 0.84240 0.75449 1.90701 1.15050 1.87773 1.52241 1.19762 0.98196 0.93535 1.03783 1.21338 0.99001 0.91685 0.97443 1.21141 0.95149 0.97845 0.99693 1.20582 0.94989 0.96042 0.94434 1.19061 0.96646 0.92766 0.98741 1.21750 0.92734 0.98461 0.97216 1.21715 0.94187 1.00423 1.00259 1.23492 0.98781 0.94491 0.97995 1.20543 0.95770 0.99145 0.97945 1.20568 0.93990 0.92781 1.04332 1.22240 0.97078 0.82376 0.95838 0.86787 1.22955 0.97256 0.98994 0.97299 1.22042 0.96852 0.98005 0.84236 1.44857 1.17682 1.70782 1.01320 1.19725 1.03013 1.33024 0.90159 0.93613 1.26765 0.97226 0.93931 1.07620 1.71027 1.47690 1.20693 1.18743 0.84083 0.75742 0.76436 0.74432 1.24247 1.16806 1.19740 1.22014 0.88650 0.93769 0.95327 0.91398 0.91080 0.89210 0.85392 0.82386 0.84424 0.85471 0.84603 0.90755 0.87923 0.88063 0.89186 0.89050 0.88081 0.95135 0.95112 0.93999 0.93713 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.01 7.20 127.77 0.92 2.93 16 2 N -0.59 -19.52 2.91 -817.78 -2.38 -21.90 16 3 C 0.56 18.72 7.36 86.79 0.64 19.36 16 4 O -0.58 -22.20 16.20 -3.87 -0.06 -22.27 16 5 C -0.15 -4.26 5.17 -20.09 -0.10 -4.36 16 6 C -0.08 -1.87 9.60 22.58 0.22 -1.65 16 7 C -0.12 -2.26 9.69 22.18 0.21 -2.05 16 8 C -0.06 -1.11 5.68 -19.58 -0.11 -1.23 16 9 C -0.07 -1.57 5.77 -20.18 -0.12 -1.68 16 10 C -0.08 -2.10 7.57 22.75 0.17 -1.93 16 11 C -0.15 -2.67 9.90 23.68 0.23 -2.43 16 12 C -0.13 -1.77 10.02 24.43 0.24 -1.53 16 13 C -0.10 -1.06 6.05 29.63 0.18 -0.88 16 14 C -0.08 -0.92 5.95 29.72 0.18 -0.74 16 15 C 0.13 4.35 3.67 46.46 0.17 4.52 16 16 H 0.11 3.75 7.02 -2.39 -0.02 3.73 16 17 C -0.13 -3.92 6.48 31.78 0.21 -3.72 16 18 C 0.11 4.49 3.52 86.73 0.31 4.80 16 19 N -0.62 -28.72 1.85 -691.55 -1.28 -30.00 16 20 C -0.33 -18.59 9.91 84.03 0.83 -17.76 16 21 H 0.05 2.81 8.06 -2.91 -0.02 2.79 16 22 C -0.06 -3.40 5.42 84.86 0.46 -2.94 16 23 N -0.94 -59.12 13.70 21.65 0.30 -58.82 16 24 Si 1.07 49.75 25.16 68.60 1.73 51.48 16 25 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 26 H -0.24 -9.98 5.10 99.48 0.51 -9.48 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 C 0.13 5.13 6.46 86.93 0.56 5.70 16 29 H 0.07 1.96 6.35 -2.38 -0.02 1.95 16 30 H 0.07 2.20 6.48 -2.39 -0.02 2.18 16 31 H 0.09 3.63 4.45 -2.39 -0.01 3.62 16 32 H 0.13 3.13 7.99 -2.91 -0.02 3.11 16 33 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.14 3.36 5.24 -2.91 -0.02 3.35 16 35 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 40 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.03 1.22 3.76 -2.39 -0.01 1.21 16 44 H 0.03 1.32 6.83 -2.39 -0.02 1.30 16 45 H 0.25 15.93 8.73 -92.71 -0.81 15.12 16 46 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 47 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.21 358.72 4.24 -66.97 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.74 Total: 20.14 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.20 Total: -5.59 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -3.36 Total: -110.72 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.06 Total: -22.27 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.73 Total: 51.48 kcal Total: -71.21 4.24 -66.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033498789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.327 kcal (2) G-P(sol) polarization free energy of solvation -71.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds