Wall clock time and date at job start Tue Mar 31 2020 14:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00207 * 2 1 4 4 O 1.21551 * 120.00066 * 184.01425 * 3 2 1 5 5 C 1.47869 * 119.99705 * 4.02131 * 3 2 1 6 6 C 1.39669 * 120.07205 * 327.73829 * 5 3 2 7 7 C 1.38100 * 120.25364 * 179.97438 * 6 5 3 8 8 C 1.37980 * 120.17402 * 0.02562 * 7 6 5 9 9 C 1.39761 * 120.09427 * 359.94116 * 8 7 6 10 10 C 1.39030 * 120.09387 * 0.06745 * 9 8 7 11 11 C 1.47849 * 119.06598 * 180.09422 * 9 8 7 12 12 C 1.32518 * 119.47518 * 19.03596 * 11 9 8 13 13 C 1.50323 * 121.05730 * 0.44147 * 12 11 9 14 14 C 1.50629 * 120.61925 * 179.97438 * 8 7 6 15 15 C 1.46500 * 119.99891 * 180.02562 * 2 1 3 16 16 H 1.08998 * 110.64138 * 178.31033 * 15 2 1 17 17 C 1.55160 * 110.72250 * 54.97442 * 15 2 1 18 18 C 1.54912 * 101.57774 * 277.13729 * 17 15 2 19 19 N 1.47420 * 104.83681 * 322.98873 * 18 17 15 20 20 C 1.36937 * 125.64922 * 204.09502 * 19 18 17 21 21 H 1.08003 * 119.99863 * 180.02562 * 20 19 18 22 22 C 1.38806 * 119.99913 * 0.04285 * 20 19 18 23 23 N 1.31615 * 120.00290 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99754 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47314 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46960 * 119.99554 * 24 22 20 27 27 H 1.48494 * 109.47063 * 239.99669 * 24 22 20 28 28 C 1.47023 * 108.70311 * 24.12987 * 19 18 17 29 29 H 1.09000 * 109.47286 * 95.51437 * 1 2 3 30 30 H 1.09008 * 109.47170 * 215.51481 * 1 2 3 31 31 H 1.08998 * 109.47288 * 335.50876 * 1 2 3 32 32 H 1.08002 * 119.87210 * 359.97438 * 6 5 3 33 33 H 1.07999 * 119.91370 * 180.02562 * 7 6 5 34 34 H 1.08006 * 120.23704 * 179.97438 * 10 9 8 35 35 H 1.08008 * 120.25994 * 199.06401 * 11 9 8 36 36 H 1.07996 * 119.47213 * 180.71722 * 12 11 9 37 37 H 1.09002 * 109.22596 * 84.48488 * 13 12 11 38 38 H 1.09006 * 109.22919 * 203.83853 * 13 12 11 39 39 H 1.09003 * 109.41185 * 25.29326 * 14 8 7 40 40 H 1.09004 * 109.35917 * 265.47147 * 14 8 7 41 41 H 1.08997 * 111.00217 * 35.21332 * 17 15 2 42 42 H 1.09004 * 111.00265 * 159.06719 * 17 15 2 43 43 H 1.09003 * 110.36233 * 204.15033 * 18 17 15 44 44 H 1.09001 * 110.45892 * 81.88163 * 18 17 15 45 45 H 0.97001 * 120.00375 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.88449 * 239.52941 * 28 19 18 47 47 H 1.08998 * 109.88570 * 118.35680 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3522 1.1684 -0.0737 5 6 1.4022 2.4461 0.0898 6 6 0.1303 2.5624 -0.4754 7 6 -0.5612 3.7550 -0.3933 8 6 0.0009 4.8399 0.2477 9 6 1.2727 4.7354 0.8178 10 6 1.9756 3.5385 0.7394 11 6 1.8523 5.9115 1.5011 12 6 1.0557 6.8934 1.8978 13 6 -0.4291 6.8262 1.6730 14 6 -0.7442 6.1455 0.3427 15 6 2.1974 -1.2687 -0.0006 16 1 3.2725 -1.0917 -0.0306 17 6 1.7506 -2.1601 -1.1894 18 6 0.4718 -2.8220 -0.6182 19 7 0.7744 -3.0625 0.8045 20 6 0.1811 -4.0077 1.5980 21 1 0.4737 -4.1048 2.6330 22 6 -0.7963 -4.8412 1.0719 23 7 -1.1531 -4.7228 -0.1894 24 14 -1.6062 -6.1302 2.1546 25 1 -1.0334 -6.0583 3.5228 26 1 -3.0681 -5.8768 2.2167 27 1 -1.3614 -7.4796 1.5852 28 6 1.8182 -2.1187 1.2305 29 1 -0.3634 -0.0988 -1.0229 30 1 -0.3634 -0.8365 0.5970 31 1 -0.3634 0.9352 0.4260 32 1 -0.3140 1.7164 -0.9787 33 1 -1.5445 3.8387 -0.8320 34 1 2.9588 3.4553 1.1788 35 1 2.9167 5.9700 1.6750 36 1 1.4806 7.7577 2.3864 37 1 -0.8895 6.2608 2.4833 38 1 -0.8370 7.8370 1.6647 39 1 -1.8157 5.9568 0.2771 40 1 -0.4400 6.7956 -0.4777 41 1 1.5192 -1.5551 -2.0660 42 1 2.5076 -2.9091 -1.4222 43 1 0.2724 -3.7646 -1.1281 44 1 -0.3812 -2.1506 -0.7164 45 1 -1.8363 -5.3050 -0.5570 46 1 2.6910 -2.6668 1.5856 47 1 1.4350 -1.4746 2.0219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033498790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:11 Heat of formation + Delta-G solvation = 53.432448 kcal Electronic energy + Delta-G solvation = -27618.697206 eV Core-core repulsion = 23960.898491 eV Total energy + Delta-G solvation = -3657.798715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66458 -39.39782 -37.44459 -36.12362 -34.45472 -32.65527 -32.24392 -30.48422 -29.40558 -29.11459 -27.96440 -26.32597 -24.85609 -24.07026 -22.85715 -22.35168 -20.93958 -20.17939 -19.07453 -18.37390 -17.03861 -16.94225 -16.43302 -16.04154 -15.70427 -15.04087 -14.80157 -14.74601 -14.68308 -14.12622 -13.78164 -13.69413 -13.35036 -13.08621 -12.89132 -12.77592 -12.46125 -12.32090 -12.22768 -11.85841 -11.84485 -11.61429 -11.42885 -11.11510 -11.08816 -10.92815 -10.83495 -10.71911 -10.34822 -10.12625 -10.11909 -9.88103 -9.58082 -9.45642 -8.94079 -8.68989 -8.26090 -8.23049 -6.87462 -5.69328 -3.11152 0.64739 1.02669 2.15440 2.97372 3.22817 3.37188 3.43494 3.45428 3.78199 4.34688 4.37935 4.46062 4.56898 4.70669 4.76391 4.88920 5.04523 5.07374 5.14238 5.32407 5.40803 5.42056 5.43853 5.48936 5.50232 5.54766 5.70556 5.72079 5.77118 5.80012 5.82750 5.90723 6.06991 6.11150 6.21410 6.24039 6.30293 6.36332 6.41363 6.55318 6.58180 6.60602 6.70487 6.75619 7.02762 7.44071 7.59771 7.68848 7.81642 8.31610 8.37062 9.18159 9.78543 10.42988 11.34237 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002783 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.456074 B =10059.060478 C =10637.535621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.585 5.585 3 C 0.555 3.445 4 O -0.547 6.547 5 C -0.128 4.128 6 C -0.092 4.092 7 C -0.127 4.127 8 C -0.058 4.058 9 C -0.070 4.070 10 C -0.048 4.048 11 C -0.116 4.116 12 C -0.148 4.148 13 C -0.092 4.092 14 C -0.081 4.081 15 C 0.125 3.875 16 H 0.101 0.899 17 C -0.154 4.154 18 C 0.145 3.855 19 N -0.602 5.602 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.127 3.873 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.021 0.979 45 H 0.251 0.749 46 H 0.034 0.966 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.461 22.260 -0.378 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.316 5.316 3 C 0.344 3.656 4 O -0.427 6.427 5 C -0.131 4.131 6 C -0.111 4.111 7 C -0.145 4.145 8 C -0.059 4.059 9 C -0.070 4.070 10 C -0.067 4.067 11 C -0.134 4.134 12 C -0.166 4.166 13 C -0.129 4.129 14 C -0.118 4.118 15 C 0.022 3.978 16 H 0.119 0.881 17 C -0.194 4.194 18 C 0.021 3.979 19 N -0.329 5.329 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.000 4.000 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.164 0.836 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.925 22.057 -0.409 22.080 hybrid contribution -0.472 -0.734 0.557 1.035 sum 0.453 21.324 0.148 21.329 Atomic orbital electron populations 1.22659 0.79430 1.04382 1.02202 1.47683 1.07327 1.05395 1.71153 1.18340 0.87013 0.83561 0.76720 1.90735 1.13576 1.87315 1.51050 1.19879 0.95627 0.94541 1.03034 1.22019 0.93077 0.98301 0.97659 1.20874 1.00570 0.92223 1.00789 1.20144 0.93747 0.95603 0.96358 1.18761 0.94128 0.93895 1.00243 1.21198 0.99100 0.90593 0.95813 1.21616 0.99357 0.93080 0.99315 1.23122 0.95324 0.98256 0.99943 1.20422 0.93860 1.01120 0.97528 1.20468 0.99812 0.93436 0.98100 1.22181 0.96462 0.81924 0.97230 0.88142 1.23353 1.01601 0.98234 0.96197 1.22115 0.90474 1.00674 0.84680 1.44545 1.42699 1.37640 1.08021 1.19118 1.14739 1.08232 0.92833 0.90477 1.24767 0.99413 0.99886 0.96514 1.69803 1.34056 1.41082 1.12089 0.86010 0.78957 0.81289 0.79313 1.20567 1.21786 1.21761 1.21644 0.92827 0.91425 0.94110 0.92184 0.88495 0.90372 0.83610 0.85249 0.84890 0.85950 0.86595 0.90509 0.90523 0.90059 0.90250 0.92040 0.90951 0.87667 0.96124 0.93795 0.94861 0.95524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 6.82 59.85 0.41 1.27 16 2 N -0.58 -10.08 2.82 -172.93 -0.49 -10.57 16 3 C 0.55 9.60 7.44 -12.32 -0.09 9.50 16 4 O -0.55 -10.96 16.14 5.32 0.09 -10.87 16 5 C -0.13 -1.84 5.46 -104.98 -0.57 -2.42 16 6 C -0.09 -1.12 7.42 -39.10 -0.29 -1.41 16 7 C -0.13 -1.31 9.69 -39.73 -0.38 -1.70 16 8 C -0.06 -0.61 5.68 -104.18 -0.59 -1.20 16 9 C -0.07 -0.81 5.77 -105.10 -0.61 -1.42 16 10 C -0.05 -0.64 9.37 -38.85 -0.36 -1.01 16 11 C -0.12 -1.10 9.90 -37.56 -0.37 -1.47 16 12 C -0.15 -1.16 10.02 -36.40 -0.36 -1.53 16 13 C -0.09 -0.64 6.05 -28.21 -0.17 -0.81 16 14 C -0.08 -0.61 5.95 -28.06 -0.17 -0.78 16 15 C 0.13 2.36 3.58 -66.09 -0.24 2.13 16 16 H 0.10 1.91 6.99 -51.93 -0.36 1.55 16 17 C -0.15 -2.96 6.53 -24.58 -0.16 -3.12 16 18 C 0.15 3.34 5.02 -2.53 -0.01 3.33 16 19 N -0.60 -14.86 2.99 -170.07 -0.51 -15.36 16 20 C -0.22 -5.99 10.27 -15.06 -0.15 -6.14 16 21 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -25.93 10.09 55.49 0.56 -25.37 16 24 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.13 2.69 6.20 -3.06 -0.02 2.67 16 29 H 0.06 0.87 7.07 -51.93 -0.37 0.50 16 30 H 0.10 1.84 5.62 -51.92 -0.29 1.54 16 31 H 0.08 1.05 4.68 -51.93 -0.24 0.81 16 32 H 0.15 1.65 4.85 -52.49 -0.25 1.40 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.75 7.96 -52.48 -0.42 1.33 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.11 2.78 5.87 -51.93 -0.31 2.48 16 44 H 0.02 0.48 5.49 -51.93 -0.29 0.20 16 45 H 0.25 6.88 8.31 -40.82 -0.34 6.55 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -31.08 363.39 -10.86 -41.94 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.72 Total: 2.61 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -4.25 Total: -4.48 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.44 Total: -51.30 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.08 -10.86 -41.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033498790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.371 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds