Wall clock time and date at job start Tue Mar 31 2020 14:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00207 * 2 1 4 4 O 1.21551 * 120.00066 * 184.01425 * 3 2 1 5 5 C 1.47869 * 119.99705 * 4.02131 * 3 2 1 6 6 C 1.39669 * 120.07205 * 327.73829 * 5 3 2 7 7 C 1.38100 * 120.25364 * 179.97438 * 6 5 3 8 8 C 1.37980 * 120.17402 * 0.02562 * 7 6 5 9 9 C 1.39761 * 120.09427 * 359.94116 * 8 7 6 10 10 C 1.39030 * 120.09387 * 0.06745 * 9 8 7 11 11 C 1.47849 * 119.06598 * 180.09422 * 9 8 7 12 12 C 1.32518 * 119.47518 * 19.03596 * 11 9 8 13 13 C 1.50323 * 121.05730 * 0.44147 * 12 11 9 14 14 C 1.50629 * 120.61925 * 179.97438 * 8 7 6 15 15 C 1.46500 * 119.99891 * 180.02562 * 2 1 3 16 16 H 1.08998 * 110.64138 * 178.31033 * 15 2 1 17 17 C 1.55160 * 110.72250 * 54.97442 * 15 2 1 18 18 C 1.54912 * 101.57774 * 277.13729 * 17 15 2 19 19 N 1.47420 * 104.83681 * 322.98873 * 18 17 15 20 20 C 1.36937 * 125.64922 * 204.09502 * 19 18 17 21 21 H 1.08003 * 119.99863 * 180.02562 * 20 19 18 22 22 C 1.38806 * 119.99913 * 0.04285 * 20 19 18 23 23 N 1.31615 * 120.00290 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99754 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47314 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46960 * 119.99554 * 24 22 20 27 27 H 1.48494 * 109.47063 * 239.99669 * 24 22 20 28 28 C 1.47023 * 108.70311 * 24.12987 * 19 18 17 29 29 H 1.09000 * 109.47286 * 95.51437 * 1 2 3 30 30 H 1.09008 * 109.47170 * 215.51481 * 1 2 3 31 31 H 1.08998 * 109.47288 * 335.50876 * 1 2 3 32 32 H 1.08002 * 119.87210 * 359.97438 * 6 5 3 33 33 H 1.07999 * 119.91370 * 180.02562 * 7 6 5 34 34 H 1.08006 * 120.23704 * 179.97438 * 10 9 8 35 35 H 1.08008 * 120.25994 * 199.06401 * 11 9 8 36 36 H 1.07996 * 119.47213 * 180.71722 * 12 11 9 37 37 H 1.09002 * 109.22596 * 84.48488 * 13 12 11 38 38 H 1.09006 * 109.22919 * 203.83853 * 13 12 11 39 39 H 1.09003 * 109.41185 * 25.29326 * 14 8 7 40 40 H 1.09004 * 109.35917 * 265.47147 * 14 8 7 41 41 H 1.08997 * 111.00217 * 35.21332 * 17 15 2 42 42 H 1.09004 * 111.00265 * 159.06719 * 17 15 2 43 43 H 1.09003 * 110.36233 * 204.15033 * 18 17 15 44 44 H 1.09001 * 110.45892 * 81.88163 * 18 17 15 45 45 H 0.97001 * 120.00375 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.88449 * 239.52941 * 28 19 18 47 47 H 1.08998 * 109.88570 * 118.35680 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3522 1.1684 -0.0737 5 6 1.4022 2.4461 0.0898 6 6 0.1303 2.5624 -0.4754 7 6 -0.5612 3.7550 -0.3933 8 6 0.0009 4.8399 0.2477 9 6 1.2727 4.7354 0.8178 10 6 1.9756 3.5385 0.7394 11 6 1.8523 5.9115 1.5011 12 6 1.0557 6.8934 1.8978 13 6 -0.4291 6.8262 1.6730 14 6 -0.7442 6.1455 0.3427 15 6 2.1974 -1.2687 -0.0006 16 1 3.2725 -1.0917 -0.0306 17 6 1.7506 -2.1601 -1.1894 18 6 0.4718 -2.8220 -0.6182 19 7 0.7744 -3.0625 0.8045 20 6 0.1811 -4.0077 1.5980 21 1 0.4737 -4.1048 2.6330 22 6 -0.7963 -4.8412 1.0719 23 7 -1.1531 -4.7228 -0.1894 24 14 -1.6062 -6.1302 2.1546 25 1 -1.0334 -6.0583 3.5228 26 1 -3.0681 -5.8768 2.2167 27 1 -1.3614 -7.4796 1.5852 28 6 1.8182 -2.1187 1.2305 29 1 -0.3634 -0.0988 -1.0229 30 1 -0.3634 -0.8365 0.5970 31 1 -0.3634 0.9352 0.4260 32 1 -0.3140 1.7164 -0.9787 33 1 -1.5445 3.8387 -0.8320 34 1 2.9588 3.4553 1.1788 35 1 2.9167 5.9700 1.6750 36 1 1.4806 7.7577 2.3864 37 1 -0.8895 6.2608 2.4833 38 1 -0.8370 7.8370 1.6647 39 1 -1.8157 5.9568 0.2771 40 1 -0.4400 6.7956 -0.4777 41 1 1.5192 -1.5551 -2.0660 42 1 2.5076 -2.9091 -1.4222 43 1 0.2724 -3.7646 -1.1281 44 1 -0.3812 -2.1506 -0.7164 45 1 -1.8363 -5.3050 -0.5570 46 1 2.6910 -2.6668 1.5856 47 1 1.4350 -1.4746 2.0219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033498790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:10 Heat of formation + Delta-G solvation = 37.893000 kcal Electronic energy + Delta-G solvation = -27619.371047 eV Core-core repulsion = 23960.898491 eV Total energy + Delta-G solvation = -3658.472556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.82080 -40.48634 -39.01296 -37.01751 -36.00191 -34.04128 -33.42523 -31.68785 -30.77378 -30.17168 -29.51411 -27.79104 -26.46248 -25.25063 -23.72805 -23.20924 -22.16847 -22.02336 -20.42840 -19.39114 -18.93704 -18.06741 -17.64212 -17.01748 -16.80829 -16.63821 -16.20668 -15.93662 -15.65030 -15.41712 -15.21616 -14.79404 -14.48331 -14.24723 -14.08317 -13.86941 -13.65585 -13.57014 -13.43377 -13.32870 -13.15475 -12.95570 -12.81721 -12.68986 -12.44938 -12.42675 -11.99730 -11.95669 -11.87677 -11.80668 -11.44859 -11.41263 -11.00318 -10.80738 -10.66171 -9.91532 -9.65916 -9.01611 -8.87599 -7.76265 -5.20271 -0.22989 0.10972 1.35712 1.48100 1.49017 1.58820 1.76180 1.93075 2.49937 2.83434 3.34033 3.37272 3.67304 3.68307 3.75542 3.84444 3.88623 3.97379 4.10549 4.12191 4.22416 4.25023 4.33395 4.41554 4.50313 4.54487 4.60478 4.65181 4.70851 4.76441 4.85514 4.87133 4.95472 5.00027 5.01361 5.05915 5.09558 5.17715 5.24595 5.29001 5.40597 5.45996 5.53703 5.65712 5.72463 5.82577 5.86815 5.95264 6.31437 6.33533 7.00626 7.12415 7.77190 8.41331 9.25066 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002783 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.456074 B =10059.060478 C =10637.535621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.587 5.587 3 C 0.555 3.445 4 O -0.582 6.582 5 C -0.150 4.150 6 C -0.099 4.099 7 C -0.121 4.121 8 C -0.060 4.060 9 C -0.073 4.073 10 C -0.067 4.067 11 C -0.149 4.149 12 C -0.127 4.127 13 C -0.098 4.098 14 C -0.081 4.081 15 C 0.136 3.864 16 H 0.101 0.899 17 C -0.139 4.139 18 C 0.152 3.848 19 N -0.617 5.617 20 C -0.237 4.237 21 H 0.075 0.925 22 C -0.059 4.059 23 N -0.943 5.943 24 Si 0.977 3.023 25 H -0.272 1.272 26 H -0.290 1.290 27 H -0.293 1.293 28 C 0.129 3.871 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.017 0.983 45 H 0.248 0.752 46 H 0.033 0.967 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 24.877 -0.211 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.316 5.316 3 C 0.346 3.654 4 O -0.464 6.464 5 C -0.152 4.152 6 C -0.117 4.117 7 C -0.139 4.139 8 C -0.060 4.060 9 C -0.073 4.073 10 C -0.086 4.086 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.134 4.134 14 C -0.118 4.118 15 C 0.032 3.968 16 H 0.119 0.881 17 C -0.178 4.178 18 C 0.028 3.972 19 N -0.344 5.344 20 C -0.366 4.366 21 H 0.093 0.907 22 C -0.252 4.252 23 N -0.592 5.592 24 Si 0.806 3.194 25 H -0.196 1.196 26 H -0.217 1.217 27 H -0.220 1.220 28 C 0.003 3.997 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.170 0.830 33 H 0.179 0.821 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.156 0.844 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.035 0.965 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.615 24.694 -0.235 24.703 hybrid contribution -0.005 -1.396 0.554 1.502 sum -0.620 23.298 0.319 23.309 Atomic orbital electron populations 1.22659 0.78366 1.04172 1.02620 1.47697 1.07896 1.04875 1.71179 1.18819 0.86743 0.84337 0.75537 1.90701 1.15169 1.87862 1.52682 1.19723 0.96797 0.93284 1.05442 1.22095 0.92282 0.99570 0.97723 1.21235 1.01495 0.91243 0.99886 1.20602 0.93321 0.97072 0.94983 1.19030 0.94620 0.93706 0.99985 1.21209 0.99173 0.91439 0.96806 1.21694 1.00054 0.93415 1.01526 1.23498 0.95885 0.97734 0.97403 1.20552 0.93092 1.02621 0.97159 1.20587 1.00637 0.91831 0.98727 1.21937 0.96670 0.82434 0.95787 0.88091 1.23206 0.99649 0.98247 0.96746 1.21904 0.92199 0.99182 0.83920 1.44728 1.43215 1.37841 1.08629 1.19392 1.15073 1.08911 0.93211 0.90676 1.25513 1.00142 1.01770 0.97798 1.70024 1.34281 1.41658 1.13281 0.85035 0.77755 0.78545 0.78103 1.19649 1.21723 1.21969 1.21677 0.91853 0.91116 0.95090 0.90774 0.91830 0.87988 0.82961 0.82105 0.86068 0.85687 0.84430 0.90604 0.87861 0.87935 0.89250 0.90080 0.90655 0.91037 0.96481 0.94247 0.94917 0.96010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.97 6.82 127.77 0.87 2.84 16 2 N -0.59 -20.31 2.82 -819.32 -2.31 -22.63 16 3 C 0.55 19.50 7.44 86.79 0.65 20.14 16 4 O -0.58 -24.01 16.14 -3.88 -0.06 -24.07 16 5 C -0.15 -4.32 5.46 -20.10 -0.11 -4.43 16 6 C -0.10 -2.26 7.42 22.58 0.17 -2.09 16 7 C -0.12 -2.17 9.69 22.18 0.21 -1.95 16 8 C -0.06 -1.08 5.68 -19.58 -0.11 -1.19 16 9 C -0.07 -1.62 5.77 -20.18 -0.12 -1.74 16 10 C -0.07 -1.83 9.37 22.75 0.21 -1.62 16 11 C -0.15 -2.64 9.90 23.68 0.23 -2.40 16 12 C -0.13 -1.61 10.02 24.43 0.24 -1.37 16 13 C -0.10 -0.97 6.05 29.64 0.18 -0.79 16 14 C -0.08 -0.90 5.95 29.73 0.18 -0.72 16 15 C 0.14 5.17 3.58 46.18 0.17 5.34 16 16 H 0.10 3.88 6.99 -2.39 -0.02 3.87 16 17 C -0.14 -5.33 6.53 31.99 0.21 -5.12 16 18 C 0.15 7.16 5.02 86.86 0.44 7.60 16 19 N -0.62 -31.13 2.99 -691.97 -2.07 -33.19 16 20 C -0.24 -13.07 10.27 84.03 0.86 -12.20 16 21 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 22 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 23 N -0.94 -54.05 10.09 21.65 0.22 -53.83 16 24 Si 0.98 44.91 29.55 68.60 2.03 46.94 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 28 C 0.13 5.58 6.20 86.73 0.54 6.12 16 29 H 0.07 2.07 7.07 -2.39 -0.02 2.06 16 30 H 0.06 2.44 5.62 -2.38 -0.01 2.42 16 31 H 0.10 2.66 4.68 -2.39 -0.01 2.65 16 32 H 0.15 3.19 4.85 -2.91 -0.01 3.18 16 33 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.12 3.43 7.96 -2.91 -0.02 3.40 16 35 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.10 0.75 8.07 -2.39 -0.02 0.73 16 40 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.07 2.83 8.14 -2.39 -0.02 2.82 16 43 H 0.07 3.89 5.87 -2.39 -0.01 3.88 16 44 H 0.02 0.82 5.49 -2.39 -0.01 0.80 16 45 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 46 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.02 0.97 8.04 -2.39 -0.02 0.95 16 Total: -1.00 -68.73 363.39 4.07 -64.66 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.98 Total: 18.51 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.29 Total: 3.60 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -4.16 Total: -109.65 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.06 Total: -24.07 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -68.73 4.07 -64.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033498790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.557 kcal (2) G-P(sol) polarization free energy of solvation -68.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds