Wall clock time and date at job start Tue Mar 31 2020 14:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00191 * 2 1 4 4 O 1.21575 * 120.00083 * 179.17615 * 3 2 1 5 5 C 1.47683 * 119.99834 * 359.16956 * 3 2 1 6 6 C 1.39764 * 119.96073 * 330.81951 * 5 3 2 7 7 C 1.37678 * 120.02541 * 179.76394 * 6 5 3 8 8 C 1.39485 * 119.83251 * 0.49863 * 7 6 5 9 9 C 1.39842 * 120.19227 * 359.75371 * 8 7 6 10 10 C 1.37461 * 119.99903 * 359.97438 * 9 8 7 11 11 C 1.50608 * 119.34662 * 180.02562 * 9 8 7 12 12 C 1.52745 * 109.80740 * 325.42671 * 11 9 8 13 13 C 1.50331 * 110.70115 * 50.41044 * 12 11 9 14 14 C 1.32639 * 121.07144 * 324.16547 * 13 12 11 15 15 C 1.46506 * 120.00012 * 179.97438 * 2 1 3 16 16 H 1.09003 * 110.77518 * 193.60289 * 15 2 1 17 17 C 1.55156 * 110.72097 * 70.35990 * 15 2 1 18 18 C 1.54906 * 101.61493 * 277.12179 * 17 15 2 19 19 N 1.47467 * 104.81123 * 323.04226 * 18 17 15 20 20 C 1.36936 * 125.62955 * 204.05415 * 19 18 17 21 21 H 1.08004 * 120.00250 * 160.86117 * 20 19 18 22 22 C 1.38819 * 119.99821 * 340.85846 * 20 19 18 23 23 N 1.31611 * 119.99880 * 358.06805 * 22 20 19 24 24 Si 1.86800 * 119.99765 * 178.06996 * 22 20 19 25 25 H 1.48507 * 109.47144 * 84.99132 * 24 22 20 26 26 H 1.48497 * 109.46939 * 204.98508 * 24 22 20 27 27 H 1.48494 * 109.47277 * 324.98825 * 24 22 20 28 28 C 1.47021 * 108.72598 * 24.07170 * 19 18 17 29 29 H 1.09000 * 109.47411 * 208.91933 * 1 2 3 30 30 H 1.08999 * 109.47233 * 328.92311 * 1 2 3 31 31 H 1.09000 * 109.47014 * 88.91965 * 1 2 3 32 32 H 1.08005 * 119.98400 * 359.97438 * 6 5 3 33 33 H 1.08008 * 120.08264 * 180.25937 * 7 6 5 34 34 H 1.08001 * 120.06944 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.41524 * 85.53287 * 11 9 8 36 36 H 1.08999 * 109.40913 * 205.32933 * 11 9 8 37 37 H 1.09005 * 109.22616 * 170.71694 * 12 11 9 38 38 H 1.08996 * 109.23512 * 290.13082 * 12 11 9 39 39 H 1.07998 * 119.46314 * 144.15414 * 13 12 11 40 40 H 1.07997 * 120.25602 * 180.41397 * 14 13 12 41 41 H 1.09001 * 111.00372 * 35.21556 * 17 15 2 42 42 H 1.08995 * 111.00393 * 159.02687 * 17 15 2 43 43 H 1.09004 * 110.36935 * 81.84944 * 18 17 15 44 44 H 1.09000 * 110.36384 * 204.17150 * 18 17 15 45 45 H 0.97004 * 119.99930 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.88449 * 239.55879 * 28 19 18 47 47 H 1.08995 * 109.88467 * 118.38856 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3545 1.1672 0.0151 5 6 1.4006 2.4461 -0.0185 6 6 0.1435 2.5177 -0.6253 7 6 -0.5480 3.7081 -0.6391 8 6 0.0136 4.8436 -0.0555 9 6 1.2736 4.7745 0.5473 10 6 1.9621 3.5849 0.5662 11 6 1.8618 6.0122 1.1721 12 6 1.4512 7.2436 0.3671 13 6 -0.0346 7.2581 0.1388 14 6 -0.7071 6.1329 -0.0638 15 6 2.1975 -1.2688 0.0006 16 1 3.2486 -1.1082 0.2402 17 6 2.0495 -1.9887 -1.3659 18 6 0.6844 -2.7010 -1.1969 19 7 0.6554 -3.1307 0.2135 20 6 -0.0900 -4.1628 0.7178 21 1 0.1708 -4.6029 1.6690 22 6 -1.1810 -4.6433 0.0065 23 7 -1.5218 -4.0821 -1.1341 24 14 -2.1654 -6.0863 0.6684 25 1 -3.1875 -5.5910 1.6252 26 1 -2.8377 -6.7844 -0.4566 27 1 -1.2536 -7.0305 1.3629 28 6 1.5587 -2.2676 0.9885 29 1 -0.3634 -0.8995 0.4969 30 1 -0.3634 0.8802 0.5305 31 1 -0.3633 0.0194 -1.0275 32 1 -0.2869 1.6379 -1.0805 33 1 -1.5213 3.7634 -1.1040 34 1 2.9354 3.5304 1.0310 35 1 1.4976 6.1099 2.1948 36 1 2.9488 5.9316 1.1818 37 1 1.7392 8.1420 0.9132 38 1 1.9617 7.2298 -0.5958 39 1 -0.5631 8.2000 0.1399 40 1 -1.7734 6.1592 -0.2331 41 1 2.0165 -1.2699 -2.1846 42 1 2.8515 -2.7115 -1.5155 43 1 -0.1326 -2.0083 -1.3990 44 1 0.6229 -3.5649 -1.8587 45 1 -2.2844 -4.4176 -1.6310 46 1 2.3347 -2.8710 1.4593 47 1 0.9940 -1.7275 1.7484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033585596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:18 Heat of formation + Delta-G solvation = 46.453915 kcal Electronic energy + Delta-G solvation = -27650.154857 eV Core-core repulsion = 23992.053530 eV Total energy + Delta-G solvation = -3658.101327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62427 -39.36704 -37.41772 -36.08420 -34.42581 -32.63213 -32.25416 -30.46546 -29.35401 -29.14876 -27.75237 -26.54091 -24.65207 -24.04350 -23.29129 -22.06796 -20.77010 -20.17511 -18.86280 -18.57079 -17.07943 -16.90124 -16.31413 -16.13719 -15.60442 -15.14199 -14.80231 -14.68582 -14.53513 -14.10010 -13.87842 -13.58384 -13.37508 -13.10557 -12.87127 -12.73009 -12.46762 -12.32801 -12.14850 -11.91582 -11.82234 -11.66711 -11.34384 -11.04262 -10.89570 -10.87934 -10.86409 -10.71602 -10.39109 -10.16026 -10.09705 -9.96322 -9.76698 -9.49687 -8.89864 -8.64250 -8.29330 -8.15285 -6.77721 -5.81522 -3.18367 0.51494 1.29001 2.04740 3.04099 3.26555 3.36290 3.42286 3.43391 3.81847 4.37834 4.40726 4.45306 4.61911 4.71415 4.79190 4.91490 5.07041 5.11453 5.19436 5.32776 5.37134 5.42575 5.48896 5.50187 5.54082 5.59471 5.68218 5.74585 5.78801 5.84443 5.88629 5.95571 6.04259 6.15670 6.22264 6.28843 6.31370 6.38988 6.40373 6.54149 6.58069 6.61188 6.72685 6.79684 7.04157 7.41606 7.57245 7.71389 7.73773 8.22420 8.39533 9.14236 9.74606 10.45113 11.31682 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002780 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.589342 B =10068.490254 C =10824.355515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.585 5.585 3 C 0.554 3.446 4 O -0.549 6.549 5 C -0.123 4.123 6 C -0.100 4.100 7 C -0.115 4.115 8 C -0.039 4.039 9 C -0.090 4.090 10 C -0.061 4.061 11 C -0.078 4.078 12 C -0.093 4.093 13 C -0.141 4.141 14 C -0.123 4.123 15 C 0.128 3.872 16 H 0.099 0.901 17 C -0.158 4.158 18 C 0.172 3.828 19 N -0.600 5.600 20 C -0.233 4.233 21 H 0.073 0.927 22 C 0.000 4.000 23 N -0.915 5.915 24 Si 0.910 3.090 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.126 3.874 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.059 0.941 45 H 0.254 0.746 46 H 0.034 0.966 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 21.421 1.376 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.316 5.316 3 C 0.343 3.657 4 O -0.428 6.428 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.133 4.133 8 C -0.039 4.039 9 C -0.091 4.091 10 C -0.080 4.080 11 C -0.115 4.115 12 C -0.130 4.130 13 C -0.159 4.159 14 C -0.141 4.141 15 C 0.024 3.976 16 H 0.117 0.883 17 C -0.197 4.197 18 C 0.047 3.953 19 N -0.327 5.327 20 C -0.362 4.362 21 H 0.090 0.910 22 C -0.198 4.198 23 N -0.560 5.560 24 Si 0.740 3.260 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.000 4.000 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.047 21.254 1.324 21.512 hybrid contribution -0.847 -0.839 0.212 1.211 sum 2.200 20.415 1.536 20.590 Atomic orbital electron populations 1.22457 0.79092 1.04479 1.01747 1.47710 1.07414 1.05354 1.71126 1.18319 0.87054 0.83612 0.76710 1.90735 1.13394 1.87432 1.51264 1.19980 0.95696 0.94081 1.02800 1.22062 0.93250 0.99001 0.97462 1.21130 1.00284 0.91659 1.00187 1.19053 0.93641 0.93687 0.97552 1.19836 0.94266 0.95037 0.99918 1.20913 0.99332 0.90540 0.97181 1.20404 1.00736 0.91207 0.99122 1.20446 0.93558 0.98082 1.00916 1.23217 0.96010 0.97901 0.98820 1.21668 0.99157 0.91372 1.01927 1.22123 0.96137 0.81980 0.97311 0.88349 1.23389 1.01645 0.99225 0.95471 1.21467 0.90270 0.97078 0.86478 1.44458 1.50213 1.34817 1.03181 1.18948 1.05024 1.07652 1.04557 0.90968 1.24952 0.97269 0.99859 0.97680 1.69917 1.28628 1.42482 1.15018 0.86184 0.80113 0.81901 0.77797 1.21416 1.21654 1.20690 1.21623 0.93642 0.91247 0.93518 0.88169 0.91252 0.92054 0.83385 0.85206 0.84999 0.90399 0.90122 0.90483 0.90486 0.86586 0.85913 0.92016 0.91137 0.94565 0.92263 0.93631 0.94827 0.95186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 6.78 59.84 0.41 1.45 16 2 N -0.59 -10.15 2.85 -173.00 -0.49 -10.65 16 3 C 0.55 9.62 7.46 -12.40 -0.09 9.53 16 4 O -0.55 -10.95 16.10 5.30 0.09 -10.86 16 5 C -0.12 -1.79 5.44 -104.89 -0.57 -2.36 16 6 C -0.10 -1.27 7.53 -39.22 -0.30 -1.57 16 7 C -0.11 -1.28 9.80 -39.32 -0.39 -1.66 16 8 C -0.04 -0.43 5.78 -104.96 -0.61 -1.04 16 9 C -0.09 -1.03 5.67 -104.35 -0.59 -1.62 16 10 C -0.06 -0.80 9.24 -39.28 -0.36 -1.17 16 11 C -0.08 -0.66 5.95 -28.06 -0.17 -0.83 16 12 C -0.09 -0.67 6.05 -28.19 -0.17 -0.84 16 13 C -0.14 -1.07 10.03 -36.38 -0.36 -1.43 16 14 C -0.12 -1.09 9.90 -37.61 -0.37 -1.46 16 15 C 0.13 2.39 3.52 -66.09 -0.23 2.16 16 16 H 0.10 1.84 7.11 -51.93 -0.37 1.47 16 17 C -0.16 -3.03 6.72 -24.58 -0.17 -3.19 16 18 C 0.17 3.96 4.57 -2.51 -0.01 3.95 16 19 N -0.60 -14.63 2.87 -170.04 -0.49 -15.11 16 20 C -0.23 -6.27 10.21 -15.06 -0.15 -6.43 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C 0.00 0.00 5.45 -17.43 -0.09 -0.10 16 23 N -0.91 -25.60 10.82 55.49 0.60 -25.00 16 24 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.13 2.62 6.04 -3.06 -0.02 2.60 16 29 H 0.10 1.95 5.50 -51.93 -0.29 1.67 16 30 H 0.07 0.97 5.54 -51.93 -0.29 0.69 16 31 H 0.06 0.96 6.22 -51.93 -0.32 0.63 16 32 H 0.15 1.83 4.52 -52.48 -0.24 1.60 16 33 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.13 1.70 7.90 -52.49 -0.41 1.28 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.04 0.87 5.96 -51.93 -0.31 0.56 16 44 H 0.06 1.54 7.33 -51.93 -0.38 1.16 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -30.70 364.15 -10.83 -41.53 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.75 Total: 2.21 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -4.25 Total: -4.03 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.38 Total: -50.76 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.70 -10.83 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033585596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.986 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds