Wall clock time and date at job start Tue Mar 31 2020 14:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00191 * 2 1 4 4 O 1.21575 * 120.00083 * 179.17615 * 3 2 1 5 5 C 1.47683 * 119.99834 * 359.16956 * 3 2 1 6 6 C 1.39764 * 119.96073 * 330.81951 * 5 3 2 7 7 C 1.37678 * 120.02541 * 179.76394 * 6 5 3 8 8 C 1.39485 * 119.83251 * 0.49863 * 7 6 5 9 9 C 1.39842 * 120.19227 * 359.75371 * 8 7 6 10 10 C 1.37461 * 119.99903 * 359.97438 * 9 8 7 11 11 C 1.50608 * 119.34662 * 180.02562 * 9 8 7 12 12 C 1.52745 * 109.80740 * 325.42671 * 11 9 8 13 13 C 1.50331 * 110.70115 * 50.41044 * 12 11 9 14 14 C 1.32639 * 121.07144 * 324.16547 * 13 12 11 15 15 C 1.46506 * 120.00012 * 179.97438 * 2 1 3 16 16 H 1.09003 * 110.77518 * 193.60289 * 15 2 1 17 17 C 1.55156 * 110.72097 * 70.35990 * 15 2 1 18 18 C 1.54906 * 101.61493 * 277.12179 * 17 15 2 19 19 N 1.47467 * 104.81123 * 323.04226 * 18 17 15 20 20 C 1.36936 * 125.62955 * 204.05415 * 19 18 17 21 21 H 1.08004 * 120.00250 * 160.86117 * 20 19 18 22 22 C 1.38819 * 119.99821 * 340.85846 * 20 19 18 23 23 N 1.31611 * 119.99880 * 358.06805 * 22 20 19 24 24 Si 1.86800 * 119.99765 * 178.06996 * 22 20 19 25 25 H 1.48507 * 109.47144 * 84.99132 * 24 22 20 26 26 H 1.48497 * 109.46939 * 204.98508 * 24 22 20 27 27 H 1.48494 * 109.47277 * 324.98825 * 24 22 20 28 28 C 1.47021 * 108.72598 * 24.07170 * 19 18 17 29 29 H 1.09000 * 109.47411 * 208.91933 * 1 2 3 30 30 H 1.08999 * 109.47233 * 328.92311 * 1 2 3 31 31 H 1.09000 * 109.47014 * 88.91965 * 1 2 3 32 32 H 1.08005 * 119.98400 * 359.97438 * 6 5 3 33 33 H 1.08008 * 120.08264 * 180.25937 * 7 6 5 34 34 H 1.08001 * 120.06944 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.41524 * 85.53287 * 11 9 8 36 36 H 1.08999 * 109.40913 * 205.32933 * 11 9 8 37 37 H 1.09005 * 109.22616 * 170.71694 * 12 11 9 38 38 H 1.08996 * 109.23512 * 290.13082 * 12 11 9 39 39 H 1.07998 * 119.46314 * 144.15414 * 13 12 11 40 40 H 1.07997 * 120.25602 * 180.41397 * 14 13 12 41 41 H 1.09001 * 111.00372 * 35.21556 * 17 15 2 42 42 H 1.08995 * 111.00393 * 159.02687 * 17 15 2 43 43 H 1.09004 * 110.36935 * 81.84944 * 18 17 15 44 44 H 1.09000 * 110.36384 * 204.17150 * 18 17 15 45 45 H 0.97004 * 119.99930 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.88449 * 239.55879 * 28 19 18 47 47 H 1.08995 * 109.88467 * 118.38856 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3545 1.1672 0.0151 5 6 1.4006 2.4461 -0.0185 6 6 0.1435 2.5177 -0.6253 7 6 -0.5480 3.7081 -0.6391 8 6 0.0136 4.8436 -0.0555 9 6 1.2736 4.7745 0.5473 10 6 1.9621 3.5849 0.5662 11 6 1.8618 6.0122 1.1721 12 6 1.4512 7.2436 0.3671 13 6 -0.0346 7.2581 0.1388 14 6 -0.7071 6.1329 -0.0638 15 6 2.1975 -1.2688 0.0006 16 1 3.2486 -1.1082 0.2402 17 6 2.0495 -1.9887 -1.3659 18 6 0.6844 -2.7010 -1.1969 19 7 0.6554 -3.1307 0.2135 20 6 -0.0900 -4.1628 0.7178 21 1 0.1708 -4.6029 1.6690 22 6 -1.1810 -4.6433 0.0065 23 7 -1.5218 -4.0821 -1.1341 24 14 -2.1654 -6.0863 0.6684 25 1 -3.1875 -5.5910 1.6252 26 1 -2.8377 -6.7844 -0.4566 27 1 -1.2536 -7.0305 1.3629 28 6 1.5587 -2.2676 0.9885 29 1 -0.3634 -0.8995 0.4969 30 1 -0.3634 0.8802 0.5305 31 1 -0.3633 0.0194 -1.0275 32 1 -0.2869 1.6379 -1.0805 33 1 -1.5213 3.7634 -1.1040 34 1 2.9354 3.5304 1.0310 35 1 1.4976 6.1099 2.1948 36 1 2.9488 5.9316 1.1818 37 1 1.7392 8.1420 0.9132 38 1 1.9617 7.2298 -0.5958 39 1 -0.5631 8.2000 0.1399 40 1 -1.7734 6.1592 -0.2331 41 1 2.0165 -1.2699 -2.1846 42 1 2.8515 -2.7115 -1.5155 43 1 -0.1326 -2.0083 -1.3990 44 1 0.6229 -3.5649 -1.8587 45 1 -2.2844 -4.4176 -1.6310 46 1 2.3347 -2.8710 1.4593 47 1 0.9940 -1.7275 1.7484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033585596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:17 Heat of formation + Delta-G solvation = 31.408051 kcal Electronic energy + Delta-G solvation = -27650.807294 eV Core-core repulsion = 23992.053530 eV Total energy + Delta-G solvation = -3658.753765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80038 -40.47388 -38.98316 -36.99389 -35.97054 -34.06972 -33.42276 -31.68831 -30.77761 -30.15364 -29.35138 -28.01239 -26.34859 -25.08024 -24.27056 -22.91480 -22.17612 -21.93474 -20.24375 -19.43833 -18.87933 -18.17346 -17.68130 -17.08487 -16.75864 -16.61276 -16.08990 -15.96543 -15.69544 -15.48153 -15.13836 -14.78346 -14.49107 -14.24236 -14.13592 -13.78795 -13.74654 -13.56295 -13.48629 -13.32349 -12.99369 -12.91119 -12.76181 -12.70446 -12.46344 -12.43862 -12.12986 -11.96074 -11.89008 -11.65583 -11.60112 -11.53347 -11.02824 -10.79457 -10.66118 -9.84769 -9.67351 -9.02010 -8.76909 -7.88165 -5.26669 -0.39925 0.37317 1.22450 1.48598 1.49077 1.57458 1.83996 1.96477 2.49964 2.85210 3.32799 3.38638 3.67128 3.68090 3.77309 3.83755 3.89271 3.96049 4.09791 4.14432 4.19412 4.24416 4.34212 4.41466 4.49391 4.55410 4.59152 4.64512 4.69453 4.77367 4.86326 4.87965 4.92089 4.98517 5.01093 5.09937 5.11828 5.14332 5.27543 5.31159 5.39596 5.44439 5.54020 5.62007 5.71582 5.74434 5.86142 5.98080 6.21883 6.34042 7.02332 7.09712 7.74121 8.44214 9.23671 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002780 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.589342 B =10068.490254 C =10824.355515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.587 5.587 3 C 0.555 3.445 4 O -0.580 6.580 5 C -0.149 4.149 6 C -0.103 4.103 7 C -0.118 4.118 8 C -0.036 4.036 9 C -0.097 4.097 10 C -0.070 4.070 11 C -0.079 4.079 12 C -0.097 4.097 13 C -0.123 4.123 14 C -0.148 4.148 15 C 0.138 3.862 16 H 0.103 0.897 17 C -0.143 4.143 18 C 0.183 3.817 19 N -0.614 5.614 20 C -0.248 4.248 21 H 0.073 0.927 22 C -0.049 4.049 23 N -0.938 5.938 24 Si 0.973 3.027 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.275 1.275 28 C 0.129 3.871 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.024 0.976 44 H 0.024 0.976 45 H 0.249 0.751 46 H 0.039 0.961 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 23.992 1.853 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.317 5.317 3 C 0.346 3.654 4 O -0.462 6.462 5 C -0.151 4.151 6 C -0.121 4.121 7 C -0.135 4.135 8 C -0.036 4.036 9 C -0.097 4.097 10 C -0.089 4.089 11 C -0.116 4.116 12 C -0.134 4.134 13 C -0.141 4.141 14 C -0.166 4.166 15 C 0.034 3.966 16 H 0.121 0.879 17 C -0.183 4.183 18 C 0.058 3.942 19 N -0.341 5.341 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.244 4.244 23 N -0.585 5.585 24 Si 0.802 3.198 25 H -0.210 1.210 26 H -0.220 1.220 27 H -0.200 1.200 28 C 0.003 3.997 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.145 0.855 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.480 23.839 1.816 24.036 hybrid contribution -0.649 -1.487 0.091 1.625 sum 1.831 22.352 1.907 22.507 Atomic orbital electron populations 1.22373 0.78405 1.03769 1.01978 1.47723 1.07741 1.05033 1.71252 1.18748 0.86801 0.84268 0.75545 1.90703 1.14781 1.87912 1.52823 1.19833 0.96725 0.93072 1.05514 1.22059 0.92718 0.99856 0.97435 1.21412 1.01090 0.91052 0.99969 1.19438 0.93433 0.94783 0.95974 1.20171 0.94475 0.95358 0.99718 1.20975 0.99438 0.90993 0.97470 1.20495 1.01131 0.90512 0.99484 1.20547 0.93499 0.98322 1.00997 1.23577 0.96167 0.98576 0.95791 1.21814 1.00126 0.90553 1.04128 1.21926 0.96291 0.82243 0.96177 0.87911 1.23253 0.99480 0.99274 0.96267 1.21232 0.92035 0.95561 0.85372 1.44627 1.50389 1.34971 1.04150 1.19250 1.05462 1.08399 1.04620 0.90971 1.25678 0.98297 1.02421 0.98037 1.70083 1.28826 1.43685 1.15915 0.85193 0.78627 0.79027 0.76980 1.20962 1.22023 1.19992 1.21661 0.93064 0.91296 0.93672 0.91430 0.89009 0.91549 0.83430 0.82824 0.85501 0.89645 0.89477 0.87969 0.90618 0.83997 0.84225 0.90760 0.90320 0.95840 0.95751 0.94130 0.94300 0.95386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 6.78 127.77 0.87 3.38 16 2 N -0.59 -20.54 2.85 -819.53 -2.34 -22.88 16 3 C 0.56 19.46 7.46 86.74 0.65 20.10 16 4 O -0.58 -23.47 16.10 -3.95 -0.06 -23.53 16 5 C -0.15 -4.33 5.44 -20.04 -0.11 -4.44 16 6 C -0.10 -2.55 7.53 22.51 0.17 -2.38 16 7 C -0.12 -2.42 9.80 22.44 0.22 -2.20 16 8 C -0.04 -0.72 5.78 -20.09 -0.12 -0.84 16 9 C -0.10 -2.07 5.67 -19.69 -0.11 -2.18 16 10 C -0.07 -1.83 9.24 22.46 0.21 -1.62 16 11 C -0.08 -1.17 5.95 29.73 0.18 -1.00 16 12 C -0.10 -1.07 6.05 29.65 0.18 -0.89 16 13 C -0.12 -1.39 10.03 24.41 0.24 -1.14 16 14 C -0.15 -2.16 9.90 23.61 0.23 -1.92 16 15 C 0.14 5.18 3.52 46.18 0.16 5.34 16 16 H 0.10 3.84 7.11 -2.39 -0.02 3.82 16 17 C -0.14 -5.52 6.72 31.98 0.21 -5.31 16 18 C 0.18 8.66 4.57 86.85 0.40 9.05 16 19 N -0.61 -30.61 2.87 -691.87 -1.99 -32.60 16 20 C -0.25 -13.56 10.21 84.04 0.86 -12.71 16 21 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 22 C -0.05 -2.72 5.45 84.87 0.46 -2.25 16 23 N -0.94 -53.74 10.82 21.65 0.23 -53.50 16 24 Si 0.97 44.52 29.55 68.60 2.03 46.55 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.13 5.41 6.04 86.73 0.52 5.94 16 29 H 0.07 2.70 5.50 -2.39 -0.01 2.69 16 30 H 0.09 2.57 5.54 -2.39 -0.01 2.56 16 31 H 0.07 2.10 6.22 -2.39 -0.01 2.08 16 32 H 0.15 3.59 4.52 -2.91 -0.01 3.57 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.13 3.33 7.90 -2.91 -0.02 3.30 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.17 8.06 -2.39 -0.02 1.15 16 37 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.14 0.90 8.06 -2.91 -0.02 0.87 16 40 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.02 1.17 5.96 -2.39 -0.01 1.16 16 44 H 0.02 1.30 7.33 -2.39 -0.02 1.28 16 45 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 Total: -1.00 -67.07 364.15 4.08 -63.00 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.98 Total: 18.04 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.23 Total: 4.94 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -4.09 Total: -108.99 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.53 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.07 4.08 -63.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033585596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.404 kcal (2) G-P(sol) polarization free energy of solvation -67.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds