Wall clock time and date at job start Tue Mar 31 2020 14:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00065 * 2 1 4 4 O 1.21280 * 120.00157 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99977 * 359.97438 * 3 2 1 6 6 H 1.09005 * 115.57654 * 50.99307 * 5 3 2 7 7 C 1.53125 * 117.51481 * 196.77141 * 5 3 2 8 8 C 1.52405 * 59.88834 * 107.46950 * 7 5 3 9 9 C 1.53779 * 121.13142 * 110.61849 * 8 7 5 10 10 C 1.54478 * 102.20744 * 118.06723 * 9 8 7 11 11 C 1.51427 * 105.23458 * 25.73627 * 10 9 8 12 12 C 1.38465 * 130.36327 * 163.13741 * 11 10 9 13 13 C 1.38093 * 120.26320 * 179.97438 * 12 11 10 14 14 C 1.38254 * 119.91610 * 0.02562 * 13 12 11 15 15 C 1.38089 * 119.93718 * 0.02562 * 14 13 12 16 16 C 1.38382 * 109.79453 * 343.13508 * 11 10 9 17 17 C 1.46506 * 119.99863 * 179.97438 * 2 1 3 18 18 C 1.53941 * 113.74042 * 38.74707 * 17 2 1 19 19 N 1.47805 * 86.03803 * 222.08195 * 18 17 2 20 20 C 1.36942 * 134.46060 * 204.64878 * 19 18 17 21 21 H 1.07993 * 120.00365 * 179.86490 * 20 19 18 22 22 C 1.38815 * 119.99628 * 359.86199 * 20 19 18 23 23 N 1.31624 * 120.00006 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99879 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46981 * 90.00270 * 24 22 20 26 26 H 1.48500 * 109.46801 * 209.99814 * 24 22 20 27 27 H 1.48497 * 109.47072 * 330.00218 * 24 22 20 28 28 C 1.47582 * 91.05139 * 24.54761 * 19 18 17 29 29 H 1.09000 * 109.46810 * 90.00947 * 1 2 3 30 30 H 1.09002 * 109.46975 * 210.00408 * 1 2 3 31 31 H 1.09001 * 109.47520 * 330.00179 * 1 2 3 32 32 H 1.08998 * 117.51742 * 0.02562 * 7 5 3 33 33 H 1.09005 * 117.51295 * 214.93254 * 7 5 3 34 34 H 1.08992 * 110.85638 * 236.25055 * 9 8 7 35 35 H 1.09004 * 110.85329 * 359.89214 * 9 8 7 36 36 H 1.09001 * 110.29121 * 144.67535 * 10 9 8 37 37 H 1.08998 * 110.29281 * 266.69961 * 10 9 8 38 38 H 1.07992 * 119.87045 * 359.96124 * 12 11 10 39 39 H 1.08001 * 120.04399 * 180.02562 * 13 12 11 40 40 H 1.08001 * 120.03637 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.85782 * 180.02562 * 15 14 13 42 42 H 1.08998 * 112.93795 * 170.33611 * 17 2 1 43 43 H 1.09001 * 113.77414 * 336.34539 * 18 17 2 44 44 H 1.09010 * 113.76932 * 107.73853 * 18 17 2 45 45 H 0.97003 * 119.99910 * 180.02562 * 23 22 20 46 46 H 1.09002 * 113.77196 * 221.15255 * 28 19 18 47 47 H 1.08995 * 113.86697 * 89.76852 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.6138 2.5706 0.7631 7 6 2.1579 3.7350 -0.3924 8 6 1.1312 3.1393 -1.3483 9 6 -0.1942 3.8615 -1.6425 10 6 -0.0901 4.1298 -3.1602 11 6 0.8385 3.0580 -3.6911 12 6 1.0504 2.6160 -4.9861 13 6 1.9621 1.6098 -5.2376 14 6 2.6663 1.0404 -4.1930 15 6 2.4561 1.4786 -2.9004 16 6 1.5431 2.4884 -2.6451 17 6 2.1975 -1.2688 0.0006 18 6 1.5556 -2.3554 -0.8809 19 7 1.8610 -3.2879 0.2245 20 6 2.0638 -4.6394 0.3109 21 1 2.2808 -5.0929 1.2667 22 6 1.9906 -5.4265 -0.8302 23 7 1.7266 -4.8737 -1.9952 24 14 2.2680 -7.2700 -0.7125 25 1 0.9723 -7.9505 -0.4611 26 1 2.8483 -7.7655 -1.9865 27 1 3.2039 -7.5595 0.4034 28 6 1.8620 -2.1777 1.1969 29 1 -0.3633 -0.0002 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.2109 3.6215 -0.6502 33 1 1.8950 4.6637 0.1141 34 1 -1.0448 3.2175 -1.4196 35 1 -0.2581 4.7969 -1.0865 36 1 -1.0714 4.0450 -3.6272 37 1 0.3297 5.1193 -3.3412 38 1 0.5003 3.0598 -5.8026 39 1 2.1249 1.2681 -6.2492 40 1 3.3801 0.2536 -4.3876 41 1 3.0072 1.0331 -2.0854 42 1 3.2669 -1.1420 -0.1680 43 1 0.4888 -2.2099 -1.0508 44 1 2.1092 -2.5617 -1.7970 45 1 1.6751 -5.4238 -2.7925 46 1 2.6598 -2.2424 1.9368 47 1 0.8863 -1.9785 1.6399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044123669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:39 Heat of formation + Delta-G solvation = 84.387377 kcal Electronic energy + Delta-G solvation = -28396.521555 eV Core-core repulsion = 24740.065147 eV Total energy + Delta-G solvation = -3656.456409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.95678 -39.39620 -37.81333 -36.68546 -34.38470 -33.76115 -31.94569 -30.59102 -28.91677 -27.83340 -26.62530 -25.30824 -24.81680 -24.46248 -22.68828 -22.35906 -21.03883 -19.95143 -19.19029 -18.38636 -17.18262 -16.75162 -16.25353 -15.87775 -15.67455 -15.22140 -14.92721 -14.78964 -14.36266 -13.89976 -13.85889 -13.74429 -13.14488 -12.80206 -12.70051 -12.53602 -12.41306 -12.20309 -12.11777 -11.78047 -11.75279 -11.67321 -11.53836 -11.29865 -11.10201 -10.91636 -10.76212 -10.69234 -10.51468 -10.27359 -10.22145 -10.04496 -9.56521 -9.44269 -8.81240 -8.68011 -8.36969 -8.11160 -6.91799 -5.79163 -3.12151 1.36248 1.49739 2.73865 3.22091 3.38996 3.43803 3.45722 3.63249 3.99857 4.21759 4.38063 4.45962 4.49356 4.68766 4.76329 4.96469 5.13511 5.14443 5.19863 5.25343 5.28819 5.38395 5.45206 5.47324 5.51926 5.54190 5.60211 5.65919 5.73924 5.80017 5.84700 5.89566 5.92921 6.01850 6.06969 6.10030 6.19258 6.24254 6.43753 6.54287 6.57456 6.68745 6.72333 6.80778 7.10095 7.19643 7.34122 7.51390 7.78111 7.94544 8.47190 9.01655 9.67860 10.54915 11.37888 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.003633 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.091058 B = 7704.536034 C = 8709.391783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.591 5.591 3 C 0.544 3.456 4 O -0.546 6.546 5 C -0.173 4.173 6 H 0.128 0.872 7 C -0.127 4.127 8 C -0.065 4.065 9 C -0.084 4.084 10 C -0.076 4.076 11 C -0.096 4.096 12 C -0.114 4.114 13 C -0.117 4.117 14 C -0.114 4.114 15 C -0.099 4.099 16 C -0.066 4.066 17 C 0.090 3.910 18 C 0.160 3.840 19 N -0.606 5.606 20 C -0.224 4.224 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.108 3.892 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.254 0.746 46 H 0.046 0.954 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 20.847 -1.832 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.322 5.322 3 C 0.332 3.668 4 O -0.425 6.425 5 C -0.194 4.194 6 H 0.146 0.854 7 C -0.164 4.164 8 C -0.065 4.065 9 C -0.121 4.121 10 C -0.113 4.113 11 C -0.096 4.096 12 C -0.132 4.132 13 C -0.135 4.135 14 C -0.132 4.132 15 C -0.117 4.117 16 C -0.066 4.066 17 C -0.013 4.013 18 C 0.034 3.966 19 N -0.332 5.332 20 C -0.351 4.351 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.019 4.019 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.132 0.868 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.817 20.474 -1.962 21.124 hybrid contribution -0.149 -1.271 0.048 1.280 sum -4.966 19.203 -1.914 19.927 Atomic orbital electron populations 1.21742 0.79904 1.02599 1.01962 1.47945 1.06943 1.05974 1.71377 1.19501 0.87342 0.84322 0.75633 1.90666 1.13747 1.87271 1.50801 1.22329 1.04036 0.93087 0.99934 0.85407 1.23027 0.98288 0.95199 0.99920 1.20371 0.97735 1.00792 0.87651 1.21858 0.94819 0.99808 0.95654 1.20995 0.98448 0.97108 0.94763 1.20462 0.98240 0.97685 0.93249 1.20510 0.99349 0.98087 0.95292 1.21056 0.96612 0.96667 0.99128 1.21110 0.99890 0.99792 0.92412 1.21123 0.97147 0.95614 0.97839 1.19566 0.97329 0.96593 0.93134 1.24033 0.97945 0.79867 0.99492 1.22626 0.96823 0.83388 0.93779 1.45708 1.81967 1.02172 1.03402 1.18994 1.41547 0.80245 0.94331 0.90081 1.24793 1.01903 0.98208 0.95338 1.69821 1.54558 1.34247 0.98013 0.86102 0.77772 0.84803 0.76985 1.21587 1.21568 1.20547 1.22962 0.98014 0.87376 0.93547 0.92544 0.90503 0.91720 0.87376 0.87604 0.90166 0.90275 0.90636 0.90256 0.86519 0.86004 0.85713 0.84971 0.86783 0.95115 0.90593 0.93567 0.93543 0.94725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 8.86 59.85 0.53 1.63 16 2 N -0.59 -9.74 3.09 -175.75 -0.54 -10.29 16 3 C 0.54 8.80 5.06 -10.98 -0.06 8.75 16 4 O -0.55 -10.63 14.42 5.56 0.08 -10.55 16 5 C -0.17 -2.08 4.73 -91.96 -0.44 -2.52 16 6 H 0.13 1.22 7.18 -51.93 -0.37 0.85 16 7 C -0.13 -1.39 9.76 -26.97 -0.26 -1.66 16 8 C -0.06 -0.73 2.34 -155.75 -0.36 -1.10 16 9 C -0.08 -0.70 6.85 -25.55 -0.18 -0.88 16 10 C -0.08 -0.67 6.77 -26.75 -0.18 -0.85 16 11 C -0.10 -1.16 6.14 -104.13 -0.64 -1.80 16 12 C -0.11 -1.35 10.03 -39.55 -0.40 -1.74 16 13 C -0.12 -1.47 10.05 -39.63 -0.40 -1.87 16 14 C -0.11 -1.67 10.05 -39.63 -0.40 -2.07 16 15 C -0.10 -1.57 9.25 -39.54 -0.37 -1.94 16 16 C -0.07 -0.91 5.80 -104.41 -0.61 -1.51 16 17 C 0.09 1.82 4.40 -70.15 -0.31 1.51 16 18 C 0.16 3.78 6.97 -2.84 -0.02 3.76 16 19 N -0.61 -15.68 3.70 -177.90 -0.66 -16.33 16 20 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 21 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 23 N -0.92 -27.26 11.39 55.49 0.63 -26.63 16 24 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.11 2.28 8.45 -2.97 -0.03 2.25 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.10 6.35 -51.93 -0.33 0.77 16 31 H 0.06 0.66 6.33 -51.93 -0.33 0.34 16 32 H 0.11 1.40 7.78 -51.93 -0.40 1.00 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.13 2.39 4.83 -52.49 -0.25 2.14 16 42 H 0.11 2.51 7.22 -51.93 -0.37 2.13 16 43 H 0.03 0.73 6.83 -51.93 -0.35 0.37 16 44 H 0.08 2.02 7.17 -51.92 -0.37 1.65 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.04 0.69 6.84 -51.93 -0.36 0.33 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -33.00 373.00 -11.17 -44.17 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.92 Total: 3.62 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -4.36 Total: -6.77 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.57 Total: -53.25 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.00 -11.17 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044123669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.558 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds