Wall clock time and date at job start Tue Mar 31 2020 14:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00065 * 2 1 4 4 O 1.21280 * 120.00157 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99977 * 359.97438 * 3 2 1 6 6 H 1.09005 * 115.57654 * 50.99307 * 5 3 2 7 7 C 1.53125 * 117.51481 * 196.77141 * 5 3 2 8 8 C 1.52405 * 59.88834 * 107.46950 * 7 5 3 9 9 C 1.53779 * 121.13142 * 110.61849 * 8 7 5 10 10 C 1.54478 * 102.20744 * 118.06723 * 9 8 7 11 11 C 1.51427 * 105.23458 * 25.73627 * 10 9 8 12 12 C 1.38465 * 130.36327 * 163.13741 * 11 10 9 13 13 C 1.38093 * 120.26320 * 179.97438 * 12 11 10 14 14 C 1.38254 * 119.91610 * 0.02562 * 13 12 11 15 15 C 1.38089 * 119.93718 * 0.02562 * 14 13 12 16 16 C 1.38382 * 109.79453 * 343.13508 * 11 10 9 17 17 C 1.46506 * 119.99863 * 179.97438 * 2 1 3 18 18 C 1.53941 * 113.74042 * 38.74707 * 17 2 1 19 19 N 1.47805 * 86.03803 * 222.08195 * 18 17 2 20 20 C 1.36942 * 134.46060 * 204.64878 * 19 18 17 21 21 H 1.07993 * 120.00365 * 179.86490 * 20 19 18 22 22 C 1.38815 * 119.99628 * 359.86199 * 20 19 18 23 23 N 1.31624 * 120.00006 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99879 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46981 * 90.00270 * 24 22 20 26 26 H 1.48500 * 109.46801 * 209.99814 * 24 22 20 27 27 H 1.48497 * 109.47072 * 330.00218 * 24 22 20 28 28 C 1.47582 * 91.05139 * 24.54761 * 19 18 17 29 29 H 1.09000 * 109.46810 * 90.00947 * 1 2 3 30 30 H 1.09002 * 109.46975 * 210.00408 * 1 2 3 31 31 H 1.09001 * 109.47520 * 330.00179 * 1 2 3 32 32 H 1.08998 * 117.51742 * 0.02562 * 7 5 3 33 33 H 1.09005 * 117.51295 * 214.93254 * 7 5 3 34 34 H 1.08992 * 110.85638 * 236.25055 * 9 8 7 35 35 H 1.09004 * 110.85329 * 359.89214 * 9 8 7 36 36 H 1.09001 * 110.29121 * 144.67535 * 10 9 8 37 37 H 1.08998 * 110.29281 * 266.69961 * 10 9 8 38 38 H 1.07992 * 119.87045 * 359.96124 * 12 11 10 39 39 H 1.08001 * 120.04399 * 180.02562 * 13 12 11 40 40 H 1.08001 * 120.03637 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.85782 * 180.02562 * 15 14 13 42 42 H 1.08998 * 112.93795 * 170.33611 * 17 2 1 43 43 H 1.09001 * 113.77414 * 336.34539 * 18 17 2 44 44 H 1.09010 * 113.76932 * 107.73853 * 18 17 2 45 45 H 0.97003 * 119.99910 * 180.02562 * 23 22 20 46 46 H 1.09002 * 113.77196 * 221.15255 * 28 19 18 47 47 H 1.08995 * 113.86697 * 89.76852 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.6138 2.5706 0.7631 7 6 2.1579 3.7350 -0.3924 8 6 1.1312 3.1393 -1.3483 9 6 -0.1942 3.8615 -1.6425 10 6 -0.0901 4.1298 -3.1602 11 6 0.8385 3.0580 -3.6911 12 6 1.0504 2.6160 -4.9861 13 6 1.9621 1.6098 -5.2376 14 6 2.6663 1.0404 -4.1930 15 6 2.4561 1.4786 -2.9004 16 6 1.5431 2.4884 -2.6451 17 6 2.1975 -1.2688 0.0006 18 6 1.5556 -2.3554 -0.8809 19 7 1.8610 -3.2879 0.2245 20 6 2.0638 -4.6394 0.3109 21 1 2.2808 -5.0929 1.2667 22 6 1.9906 -5.4265 -0.8302 23 7 1.7266 -4.8737 -1.9952 24 14 2.2680 -7.2700 -0.7125 25 1 0.9723 -7.9505 -0.4611 26 1 2.8483 -7.7655 -1.9865 27 1 3.2039 -7.5595 0.4034 28 6 1.8620 -2.1777 1.1969 29 1 -0.3633 -0.0002 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.2109 3.6215 -0.6502 33 1 1.8950 4.6637 0.1141 34 1 -1.0448 3.2175 -1.4196 35 1 -0.2581 4.7969 -1.0865 36 1 -1.0714 4.0450 -3.6272 37 1 0.3297 5.1193 -3.3412 38 1 0.5003 3.0598 -5.8026 39 1 2.1249 1.2681 -6.2492 40 1 3.3801 0.2536 -4.3876 41 1 3.0072 1.0331 -2.0854 42 1 3.2669 -1.1420 -0.1680 43 1 0.4888 -2.2099 -1.0508 44 1 2.1092 -2.5617 -1.7970 45 1 1.6751 -5.4238 -2.7925 46 1 2.6598 -2.2424 1.9368 47 1 0.8863 -1.9785 1.6399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044123669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:38 Heat of formation + Delta-G solvation = 65.924511 kcal Electronic energy + Delta-G solvation = -28397.322165 eV Core-core repulsion = 24740.065147 eV Total energy + Delta-G solvation = -3657.257019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00828 -40.71900 -39.33393 -37.75891 -35.90517 -34.65732 -33.97805 -31.60128 -29.85488 -29.67612 -27.89600 -26.67837 -26.48528 -25.59110 -23.99957 -23.59886 -21.96905 -21.17175 -20.46347 -19.76682 -18.89730 -18.30216 -17.52600 -17.07131 -16.83403 -16.75514 -16.16405 -15.84559 -15.70264 -15.48189 -15.17316 -14.75350 -14.48907 -14.15268 -13.85091 -13.75439 -13.61185 -13.33297 -13.27606 -13.19886 -13.19264 -12.94225 -12.84783 -12.58424 -12.55990 -12.47485 -12.12232 -12.02127 -11.99550 -11.65710 -11.58755 -11.30405 -11.19832 -10.91134 -10.74785 -9.71708 -9.57444 -9.31722 -9.00600 -7.95768 -5.30959 0.35321 0.45372 1.43116 1.45829 1.52328 1.54615 1.93076 2.45615 2.64504 3.04377 3.21106 3.30662 3.40834 3.53710 3.62272 3.73185 3.85049 3.88959 4.12527 4.15154 4.18803 4.23896 4.30650 4.43479 4.45035 4.53202 4.63561 4.65056 4.67960 4.70801 4.80313 4.82458 4.87257 4.92034 4.98431 5.07987 5.14725 5.16908 5.19655 5.20061 5.30364 5.35116 5.41450 5.54767 5.63519 5.66692 5.70141 5.84444 6.10277 6.46664 6.84617 7.17847 7.53616 8.46934 9.21175 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.003633 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.091058 B = 7704.536034 C = 8709.391783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.593 5.593 3 C 0.539 3.461 4 O -0.589 6.589 5 C -0.177 4.177 6 H 0.166 0.834 7 C -0.122 4.122 8 C -0.061 4.061 9 C -0.075 4.075 10 C -0.074 4.074 11 C -0.096 4.096 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.143 4.143 15 C -0.129 4.129 16 C -0.086 4.086 17 C 0.116 3.884 18 C 0.167 3.833 19 N -0.635 5.635 20 C -0.239 4.239 21 H 0.087 0.913 22 C -0.064 4.064 23 N -0.953 5.953 24 Si 0.983 3.017 25 H -0.282 1.282 26 H -0.294 1.294 27 H -0.268 1.268 28 C 0.116 3.884 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.250 0.750 46 H 0.050 0.950 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 23.657 -0.910 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.323 5.323 3 C 0.330 3.670 4 O -0.471 6.471 5 C -0.198 4.198 6 H 0.184 0.816 7 C -0.159 4.159 8 C -0.062 4.062 9 C -0.112 4.112 10 C -0.110 4.110 11 C -0.096 4.096 12 C -0.133 4.133 13 C -0.139 4.139 14 C -0.161 4.161 15 C -0.147 4.147 16 C -0.086 4.086 17 C 0.010 3.990 18 C 0.041 3.959 19 N -0.362 5.362 20 C -0.367 4.367 21 H 0.105 0.895 22 C -0.257 4.257 23 N -0.601 5.601 24 Si 0.810 3.190 25 H -0.208 1.208 26 H -0.221 1.221 27 H -0.193 1.193 28 C -0.010 4.010 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.165 0.835 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.781 23.320 -1.008 24.604 hybrid contribution 0.831 -2.088 -0.286 2.265 sum -6.950 21.232 -1.295 22.378 Atomic orbital electron populations 1.21937 0.77567 1.04415 1.02320 1.47895 1.08199 1.04698 1.71516 1.20316 0.87101 0.85516 0.74069 1.90645 1.16057 1.87954 1.52408 1.22383 1.04916 0.90590 1.01873 0.81634 1.23126 0.96694 0.96177 0.99871 1.20600 0.99442 1.00249 0.85910 1.21979 0.92738 1.01010 0.95510 1.21131 0.98511 0.96353 0.95045 1.21014 0.97962 0.97908 0.92762 1.20928 0.98637 0.97227 0.96500 1.21313 0.96415 0.96853 0.99300 1.21173 1.01090 1.00628 0.93257 1.21009 0.98837 0.97632 0.97192 1.19936 0.96876 0.96119 0.95638 1.23232 0.96523 0.81435 0.97784 1.22415 0.96406 0.84694 0.92367 1.46017 1.82329 1.02449 1.05451 1.19412 1.40937 0.81672 0.94674 0.89522 1.25679 1.02232 1.02798 0.94982 1.70027 1.55986 1.35601 0.98520 0.85021 0.77890 0.79201 0.76863 1.20844 1.22063 1.19262 1.23059 0.99286 0.85469 0.93166 0.92946 0.91206 0.87284 0.90548 0.83527 0.89062 0.87003 0.88570 0.88501 0.83306 0.84055 0.87133 0.88422 0.89594 0.94866 0.94821 0.94153 0.93150 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.01 8.86 127.77 1.13 3.14 16 2 N -0.59 -19.75 3.09 -828.34 -2.56 -22.31 16 3 C 0.54 17.67 5.06 87.66 0.44 18.11 16 4 O -0.59 -24.42 14.42 -3.03 -0.04 -24.46 16 5 C -0.18 -3.82 4.73 -11.66 -0.06 -3.88 16 6 H 0.17 2.31 7.18 -2.38 -0.02 2.29 16 7 C -0.12 -2.37 9.76 30.44 0.30 -2.08 16 8 C -0.06 -1.21 2.34 -52.98 -0.12 -1.34 16 9 C -0.08 -0.84 6.85 31.36 0.21 -0.63 16 10 C -0.07 -0.93 6.77 30.58 0.21 -0.72 16 11 C -0.10 -2.10 6.14 -19.54 -0.12 -2.22 16 12 C -0.12 -2.50 10.03 22.29 0.22 -2.28 16 13 C -0.12 -3.11 10.05 22.24 0.22 -2.88 16 14 C -0.14 -4.64 10.05 22.24 0.22 -4.42 16 15 C -0.13 -4.41 9.25 22.30 0.21 -4.20 16 16 C -0.09 -2.31 5.80 -19.73 -0.11 -2.43 16 17 C 0.12 4.91 4.40 46.75 0.21 5.11 16 18 C 0.17 8.40 6.97 86.44 0.60 9.00 16 19 N -0.64 -33.99 3.70 -716.77 -2.65 -36.65 16 20 C -0.24 -13.81 10.70 84.03 0.90 -12.91 16 21 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 22 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 23 N -0.95 -58.96 11.39 21.65 0.25 -58.71 16 24 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.12 4.95 8.45 86.48 0.73 5.68 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.88 6.35 -2.39 -0.02 1.86 16 31 H 0.11 1.79 6.33 -2.39 -0.02 1.77 16 32 H 0.08 2.01 7.78 -2.39 -0.02 1.99 16 33 H 0.15 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 0.61 8.12 -2.39 -0.02 0.59 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.11 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.10 3.97 4.83 -2.91 -0.01 3.96 16 42 H 0.09 4.14 7.22 -2.39 -0.02 4.12 16 43 H 0.03 1.64 6.83 -2.39 -0.02 1.63 16 44 H 0.03 1.95 7.17 -2.38 -0.02 1.93 16 45 H 0.25 14.97 8.31 -92.71 -0.77 14.19 16 46 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.06 2.34 6.84 -2.39 -0.02 2.33 16 Total: -1.00 -78.40 373.00 3.65 -74.75 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.97 Total: 20.97 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.66 Total: -2.18 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -4.97 Total: -117.68 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.40 3.65 -74.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044123669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.678 kcal (2) G-P(sol) polarization free energy of solvation -78.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds