Wall clock time and date at job start Tue Mar 31 2020 14:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 119.99851 * 2 1 4 4 O 1.21287 * 120.00119 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00482 * 359.97438 * 3 2 1 6 6 H 1.09007 * 115.55790 * 34.25743 * 5 3 2 7 7 C 1.53125 * 117.51963 * 248.43826 * 5 3 2 8 8 C 1.52373 * 59.84468 * 252.55602 * 7 5 3 9 9 C 1.53794 * 121.19711 * 249.48396 * 8 7 5 10 10 C 1.54482 * 102.20644 * 190.03726 * 9 8 7 11 11 C 1.51425 * 105.28983 * 25.54354 * 10 9 8 12 12 C 1.38473 * 130.36586 * 162.73874 * 11 10 9 13 13 C 1.38097 * 120.27086 * 180.17737 * 12 11 10 14 14 C 1.38269 * 119.90502 * 0.27861 * 13 12 11 15 15 C 1.38081 * 119.93760 * 0.02562 * 14 13 12 16 16 C 1.38389 * 109.79437 * 343.43521 * 11 10 9 17 17 C 1.46494 * 119.99650 * 180.02562 * 2 1 3 18 18 C 1.53940 * 113.74865 * 38.73885 * 17 2 1 19 19 N 1.47812 * 86.03873 * 222.08648 * 18 17 2 20 20 C 1.36934 * 134.45353 * 204.64624 * 19 18 17 21 21 H 1.07999 * 120.00279 * 173.34478 * 20 19 18 22 22 C 1.38819 * 120.00111 * 353.34149 * 20 19 18 23 23 N 1.31616 * 119.99824 * 5.06900 * 22 20 19 24 24 Si 1.86801 * 119.99893 * 185.06558 * 22 20 19 25 25 H 1.48501 * 109.47131 * 94.98873 * 24 22 20 26 26 H 1.48494 * 109.46919 * 214.98813 * 24 22 20 27 27 H 1.48504 * 109.47204 * 334.99101 * 24 22 20 28 28 C 1.47573 * 91.05340 * 24.54564 * 19 18 17 29 29 H 1.09000 * 109.47113 * 90.00065 * 1 2 3 30 30 H 1.08996 * 109.46977 * 210.00298 * 1 2 3 31 31 H 1.09007 * 109.46818 * 330.00124 * 1 2 3 32 32 H 1.09001 * 117.51195 * 145.11417 * 7 5 3 33 33 H 1.09003 * 117.51386 * 0.02562 * 7 5 3 34 34 H 1.09004 * 110.85152 * 308.21464 * 9 8 7 35 35 H 1.08997 * 110.85734 * 71.85860 * 9 8 7 36 36 H 1.08995 * 110.28951 * 144.67854 * 10 9 8 37 37 H 1.08995 * 110.29259 * 266.70988 * 10 9 8 38 38 H 1.08004 * 119.86348 * 0.46049 * 12 11 10 39 39 H 1.07995 * 120.04513 * 180.29472 * 13 12 11 40 40 H 1.08000 * 120.02823 * 180.02562 * 14 13 12 41 41 H 1.07996 * 119.85542 * 179.97438 * 15 14 13 42 42 H 1.09009 * 112.94259 * 170.33597 * 17 2 1 43 43 H 1.09009 * 113.76811 * 336.34834 * 18 17 2 44 44 H 1.08999 * 113.77078 * 107.74073 * 18 17 2 45 45 H 0.97003 * 119.99392 * 180.02562 * 23 22 20 46 46 H 1.08994 * 113.77274 * 221.15365 * 28 19 18 47 47 H 1.09007 * 113.87261 * 89.76564 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 -0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.4462 2.4734 0.5526 7 6 1.4645 3.3343 -1.2637 8 6 2.2039 3.7578 -0.0005 9 6 1.7564 4.9852 0.8109 10 6 2.9253 5.1634 1.8051 11 6 4.1273 4.5442 1.1233 12 6 5.4794 4.6870 1.3856 13 6 6.4119 4.0170 0.6184 14 6 5.9948 3.2046 -0.4198 15 6 4.6474 3.0655 -0.6874 16 6 3.7098 3.7361 0.0804 17 6 2.1975 -1.2687 -0.0006 18 6 1.5556 -2.3547 -0.8828 19 7 1.8610 -3.2880 0.2220 20 6 2.0638 -4.6395 0.3072 21 1 2.3838 -5.0798 1.2400 22 6 1.8581 -5.4438 -0.8054 23 7 1.5654 -4.8982 -1.9668 24 14 1.9968 -7.3005 -0.6541 25 1 0.6489 -7.8806 -0.4259 26 1 2.5700 -7.8576 -1.9055 27 1 2.8816 -7.6393 0.4895 28 6 1.8621 -2.1786 1.1951 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5139 32 1 0.5768 3.9024 -1.5419 33 1 2.0611 2.9570 -2.0943 34 1 1.6567 5.8599 0.1682 35 1 0.8249 4.7824 1.3394 36 1 3.1001 6.2220 1.9970 37 1 2.7115 4.6410 2.7375 38 1 5.8059 5.3214 2.1965 39 1 7.4653 4.1273 0.8292 40 1 6.7224 2.6794 -1.0209 41 1 4.3231 2.4309 -1.4989 42 1 3.2670 -1.1419 -0.1690 43 1 0.4887 -2.2090 -1.0525 44 1 2.1090 -2.5603 -1.7990 45 1 1.4213 -5.4603 -2.7441 46 1 2.6599 -2.2439 1.9349 47 1 0.8863 -1.9796 1.6384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044123670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:42 Heat of formation + Delta-G solvation = 89.638001 kcal Electronic energy + Delta-G solvation = -27833.076861 eV Core-core repulsion = 24176.848137 eV Total energy + Delta-G solvation = -3656.228725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.89070 -39.37444 -37.76950 -36.59342 -34.40166 -33.76896 -31.97781 -30.49368 -28.85975 -27.85189 -26.61662 -25.38627 -24.82520 -24.30389 -22.67767 -22.42255 -20.96823 -20.07670 -19.05852 -18.37459 -17.16094 -16.75454 -16.46930 -15.67444 -15.27187 -15.17206 -14.89407 -14.78536 -14.61985 -14.00303 -13.82523 -13.75793 -13.01216 -12.91726 -12.78045 -12.48873 -12.36846 -12.30113 -11.95171 -11.86791 -11.68539 -11.62973 -11.54405 -11.31966 -11.07467 -10.89701 -10.73635 -10.64398 -10.45178 -10.40987 -10.21804 -10.04975 -9.57742 -9.45209 -8.81573 -8.46957 -8.18156 -8.08492 -6.91605 -5.82069 -3.13839 1.45078 1.61993 2.73031 3.24673 3.38110 3.43442 3.45202 3.68741 4.06779 4.24544 4.43196 4.45481 4.52538 4.66606 4.77831 4.96693 5.15792 5.17788 5.18622 5.24261 5.32193 5.40444 5.44783 5.45418 5.51160 5.52720 5.57080 5.67681 5.74023 5.78251 5.82306 5.89275 5.91186 5.98855 6.09600 6.13630 6.19661 6.31454 6.44589 6.58208 6.60763 6.73052 6.81575 6.84607 7.17582 7.18260 7.33457 7.50578 7.80937 7.92931 8.53326 9.00271 9.66282 10.54436 11.35723 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.002897 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.835183 B = 9663.866799 C =10365.429584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.535 3.465 4 O -0.530 6.530 5 C -0.168 4.168 6 H 0.126 0.874 7 C -0.136 4.136 8 C -0.061 4.061 9 C -0.084 4.084 10 C -0.078 4.078 11 C -0.098 4.098 12 C -0.123 4.123 13 C -0.118 4.118 14 C -0.132 4.132 15 C -0.040 4.040 16 C -0.051 4.051 17 C 0.092 3.908 18 C 0.160 3.840 19 N -0.606 5.606 20 C -0.224 4.224 21 H 0.082 0.918 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.108 3.892 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.033 0.967 44 H 0.071 0.929 45 H 0.254 0.746 46 H 0.045 0.955 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 23.240 3.901 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.328 5.328 3 C 0.322 3.678 4 O -0.407 6.407 5 C -0.189 4.189 6 H 0.144 0.856 7 C -0.173 4.173 8 C -0.061 4.061 9 C -0.121 4.121 10 C -0.115 4.115 11 C -0.098 4.098 12 C -0.141 4.141 13 C -0.136 4.136 14 C -0.150 4.150 15 C -0.058 4.058 16 C -0.051 4.051 17 C -0.012 4.012 18 C 0.034 3.966 19 N -0.333 5.333 20 C -0.351 4.351 21 H 0.100 0.900 22 C -0.203 4.203 23 N -0.565 5.565 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.019 4.019 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.051 0.949 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.109 22.869 3.784 23.180 hybrid contribution -0.262 -1.395 0.124 1.424 sum -0.371 21.474 3.908 21.830 Atomic orbital electron populations 1.21778 0.80095 1.02671 1.01901 1.47995 1.06814 1.06044 1.71968 1.19643 0.87523 0.84169 0.76454 1.90726 1.13372 1.86739 1.49866 1.22397 1.01409 0.90388 1.04728 0.85632 1.22947 1.02464 1.00885 0.91024 1.20283 0.90843 0.94479 1.00543 1.21833 0.97936 0.95658 0.96654 1.20999 0.91809 1.00409 0.98244 1.20437 0.93872 0.98657 0.96839 1.20420 0.91640 1.01546 1.00518 1.20952 0.98920 0.97639 0.96095 1.20985 0.95661 0.99655 0.98720 1.20504 0.91789 0.94837 0.98701 1.19352 0.91999 0.97384 0.96340 1.24010 0.97971 0.79857 0.99325 1.22597 0.96912 0.83492 0.93587 1.45689 1.82120 1.02239 1.03213 1.19003 1.39058 0.79950 0.97137 0.90044 1.24834 1.01609 0.98170 0.95642 1.69837 1.53530 1.33873 0.99256 0.86096 0.77608 0.85000 0.77072 1.21577 1.21637 1.20475 1.22965 0.97964 0.87443 0.93553 0.92498 0.90531 0.91725 0.87413 0.87994 0.90158 0.90457 0.90825 0.90398 0.86880 0.86462 0.86351 0.86486 0.86776 0.94896 0.91035 0.93558 0.93650 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 8.86 59.85 0.53 1.54 16 2 N -0.60 -9.67 3.09 -175.74 -0.54 -10.22 16 3 C 0.53 8.48 7.45 -10.99 -0.08 8.40 16 4 O -0.53 -9.98 11.27 5.55 0.06 -9.91 16 5 C -0.17 -1.96 5.15 -92.02 -0.47 -2.43 16 6 H 0.13 1.17 6.44 -51.93 -0.33 0.84 16 7 C -0.14 -1.36 9.93 -26.99 -0.27 -1.63 16 8 C -0.06 -0.69 2.34 -155.82 -0.36 -1.05 16 9 C -0.08 -0.71 6.85 -25.54 -0.17 -0.89 16 10 C -0.08 -0.73 6.77 -26.75 -0.18 -0.92 16 11 C -0.10 -1.23 6.15 -104.12 -0.64 -1.87 16 12 C -0.12 -1.48 10.03 -39.55 -0.40 -1.88 16 13 C -0.12 -1.45 10.05 -39.62 -0.40 -1.85 16 14 C -0.13 -1.80 10.05 -39.63 -0.40 -2.20 16 15 C -0.04 -0.60 7.44 -39.54 -0.29 -0.89 16 16 C -0.05 -0.70 4.86 -104.41 -0.51 -1.20 16 17 C 0.09 1.85 4.40 -70.15 -0.31 1.54 16 18 C 0.16 3.77 6.88 -2.84 -0.02 3.75 16 19 N -0.61 -15.72 3.70 -177.88 -0.66 -16.38 16 20 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 23 N -0.92 -27.20 11.51 55.49 0.64 -26.56 16 24 Si 0.91 22.17 29.56 -169.99 -5.02 17.14 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.11 2.29 8.46 -2.97 -0.03 2.26 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.07 6.35 -51.93 -0.33 0.74 16 31 H 0.06 0.62 5.99 -51.93 -0.31 0.31 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.10 8.06 -52.48 -0.42 0.67 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.12 1.82 7.21 -52.49 -0.38 1.44 16 42 H 0.11 2.51 7.22 -51.92 -0.37 2.13 16 43 H 0.03 0.77 6.83 -51.92 -0.35 0.41 16 44 H 0.07 1.89 7.37 -51.93 -0.38 1.51 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.03 0.68 6.84 -51.93 -0.36 0.33 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -33.19 371.99 -11.19 -44.38 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.02 Total: 2.01 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -4.26 Total: -6.07 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.56 Total: -53.15 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.06 Total: -9.91 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.19 -11.19 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044123670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.020 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds