Wall clock time and date at job start Tue Mar 31 2020 14:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 119.99851 * 2 1 4 4 O 1.21287 * 120.00119 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00482 * 359.97438 * 3 2 1 6 6 H 1.09007 * 115.55790 * 34.25743 * 5 3 2 7 7 C 1.53125 * 117.51963 * 248.43826 * 5 3 2 8 8 C 1.52373 * 59.84468 * 252.55602 * 7 5 3 9 9 C 1.53794 * 121.19711 * 249.48396 * 8 7 5 10 10 C 1.54482 * 102.20644 * 190.03726 * 9 8 7 11 11 C 1.51425 * 105.28983 * 25.54354 * 10 9 8 12 12 C 1.38473 * 130.36586 * 162.73874 * 11 10 9 13 13 C 1.38097 * 120.27086 * 180.17737 * 12 11 10 14 14 C 1.38269 * 119.90502 * 0.27861 * 13 12 11 15 15 C 1.38081 * 119.93760 * 0.02562 * 14 13 12 16 16 C 1.38389 * 109.79437 * 343.43521 * 11 10 9 17 17 C 1.46494 * 119.99650 * 180.02562 * 2 1 3 18 18 C 1.53940 * 113.74865 * 38.73885 * 17 2 1 19 19 N 1.47812 * 86.03873 * 222.08648 * 18 17 2 20 20 C 1.36934 * 134.45353 * 204.64624 * 19 18 17 21 21 H 1.07999 * 120.00279 * 173.34478 * 20 19 18 22 22 C 1.38819 * 120.00111 * 353.34149 * 20 19 18 23 23 N 1.31616 * 119.99824 * 5.06900 * 22 20 19 24 24 Si 1.86801 * 119.99893 * 185.06558 * 22 20 19 25 25 H 1.48501 * 109.47131 * 94.98873 * 24 22 20 26 26 H 1.48494 * 109.46919 * 214.98813 * 24 22 20 27 27 H 1.48504 * 109.47204 * 334.99101 * 24 22 20 28 28 C 1.47573 * 91.05340 * 24.54564 * 19 18 17 29 29 H 1.09000 * 109.47113 * 90.00065 * 1 2 3 30 30 H 1.08996 * 109.46977 * 210.00298 * 1 2 3 31 31 H 1.09007 * 109.46818 * 330.00124 * 1 2 3 32 32 H 1.09001 * 117.51195 * 145.11417 * 7 5 3 33 33 H 1.09003 * 117.51386 * 0.02562 * 7 5 3 34 34 H 1.09004 * 110.85152 * 308.21464 * 9 8 7 35 35 H 1.08997 * 110.85734 * 71.85860 * 9 8 7 36 36 H 1.08995 * 110.28951 * 144.67854 * 10 9 8 37 37 H 1.08995 * 110.29259 * 266.70988 * 10 9 8 38 38 H 1.08004 * 119.86348 * 0.46049 * 12 11 10 39 39 H 1.07995 * 120.04513 * 180.29472 * 13 12 11 40 40 H 1.08000 * 120.02823 * 180.02562 * 14 13 12 41 41 H 1.07996 * 119.85542 * 179.97438 * 15 14 13 42 42 H 1.09009 * 112.94259 * 170.33597 * 17 2 1 43 43 H 1.09009 * 113.76811 * 336.34834 * 18 17 2 44 44 H 1.08999 * 113.77078 * 107.74073 * 18 17 2 45 45 H 0.97003 * 119.99392 * 180.02562 * 23 22 20 46 46 H 1.08994 * 113.77274 * 221.15365 * 28 19 18 47 47 H 1.09007 * 113.87261 * 89.76564 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 -0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.4462 2.4734 0.5526 7 6 1.4645 3.3343 -1.2637 8 6 2.2039 3.7578 -0.0005 9 6 1.7564 4.9852 0.8109 10 6 2.9253 5.1634 1.8051 11 6 4.1273 4.5442 1.1233 12 6 5.4794 4.6870 1.3856 13 6 6.4119 4.0170 0.6184 14 6 5.9948 3.2046 -0.4198 15 6 4.6474 3.0655 -0.6874 16 6 3.7098 3.7361 0.0804 17 6 2.1975 -1.2687 -0.0006 18 6 1.5556 -2.3547 -0.8828 19 7 1.8610 -3.2880 0.2220 20 6 2.0638 -4.6395 0.3072 21 1 2.3838 -5.0798 1.2400 22 6 1.8581 -5.4438 -0.8054 23 7 1.5654 -4.8982 -1.9668 24 14 1.9968 -7.3005 -0.6541 25 1 0.6489 -7.8806 -0.4259 26 1 2.5700 -7.8576 -1.9055 27 1 2.8816 -7.6393 0.4895 28 6 1.8621 -2.1786 1.1951 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5139 32 1 0.5768 3.9024 -1.5419 33 1 2.0611 2.9570 -2.0943 34 1 1.6567 5.8599 0.1682 35 1 0.8249 4.7824 1.3394 36 1 3.1001 6.2220 1.9970 37 1 2.7115 4.6410 2.7375 38 1 5.8059 5.3214 2.1965 39 1 7.4653 4.1273 0.8292 40 1 6.7224 2.6794 -1.0209 41 1 4.3231 2.4309 -1.4989 42 1 3.2670 -1.1419 -0.1690 43 1 0.4887 -2.2090 -1.0525 44 1 2.1090 -2.5603 -1.7990 45 1 1.4213 -5.4603 -2.7441 46 1 2.6599 -2.2439 1.9349 47 1 0.8863 -1.9796 1.6384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044123670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:41 Heat of formation + Delta-G solvation = 71.583135 kcal Electronic energy + Delta-G solvation = -27833.859779 eV Core-core repulsion = 24176.848137 eV Total energy + Delta-G solvation = -3657.011642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89285 -40.69190 -39.22784 -37.63493 -35.86926 -34.63905 -33.99127 -31.46949 -29.80462 -29.62850 -27.83410 -26.67781 -26.54538 -25.39299 -24.06875 -23.48042 -21.86628 -21.34383 -20.31930 -19.63099 -18.87558 -18.23462 -17.66079 -17.00707 -16.70537 -16.40134 -16.09854 -15.79662 -15.63426 -15.59846 -15.16592 -14.78702 -14.47385 -14.04017 -13.83200 -13.77227 -13.59228 -13.35901 -13.29660 -13.22811 -13.00760 -12.83522 -12.80039 -12.61844 -12.56956 -12.39176 -12.07758 -11.98993 -11.94562 -11.60210 -11.53778 -11.26655 -11.18578 -10.90828 -10.67913 -9.52488 -9.43010 -9.14819 -8.98613 -7.97605 -5.31358 0.48674 0.62329 1.43574 1.45532 1.54822 1.57375 1.98342 2.46020 2.74411 3.15489 3.20327 3.33213 3.44498 3.62780 3.68001 3.76757 3.82151 3.96429 4.13372 4.23312 4.25979 4.27795 4.33740 4.46491 4.53007 4.56849 4.64715 4.67824 4.73684 4.76777 4.81147 4.82320 4.92737 4.94653 5.01767 5.05384 5.15205 5.18927 5.22895 5.25049 5.31537 5.40306 5.42353 5.65431 5.70217 5.73982 5.84868 5.86118 6.23122 6.53924 6.84961 7.28411 7.53055 8.47622 9.20112 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.002897 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.835183 B = 9663.866799 C =10365.429584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.599 5.599 3 C 0.525 3.475 4 O -0.567 6.567 5 C -0.169 4.169 6 H 0.161 0.839 7 C -0.123 4.123 8 C -0.069 4.069 9 C -0.074 4.074 10 C -0.077 4.077 11 C -0.109 4.109 12 C -0.131 4.131 13 C -0.125 4.125 14 C -0.155 4.155 15 C -0.065 4.065 16 C -0.073 4.073 17 C 0.118 3.882 18 C 0.166 3.834 19 N -0.636 5.636 20 C -0.240 4.240 21 H 0.085 0.915 22 C -0.063 4.063 23 N -0.951 5.951 24 Si 0.982 3.018 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.268 1.268 28 C 0.115 3.885 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.039 0.961 44 H 0.032 0.968 45 H 0.251 0.749 46 H 0.046 0.954 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 25.537 5.813 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.330 5.330 3 C 0.315 3.685 4 O -0.446 6.446 5 C -0.190 4.190 6 H 0.178 0.822 7 C -0.160 4.160 8 C -0.069 4.069 9 C -0.111 4.111 10 C -0.114 4.114 11 C -0.109 4.109 12 C -0.148 4.148 13 C -0.143 4.143 14 C -0.173 4.173 15 C -0.083 4.083 16 C -0.073 4.073 17 C 0.013 3.987 18 C 0.040 3.960 19 N -0.364 5.364 20 C -0.368 4.368 21 H 0.102 0.898 22 C -0.256 4.256 23 N -0.599 5.599 24 Si 0.809 3.191 25 H -0.210 1.210 26 H -0.220 1.220 27 H -0.192 1.192 28 C -0.011 4.011 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.110 25.205 5.721 25.933 hybrid contribution 0.445 -2.050 -0.476 2.151 sum -1.665 23.155 5.246 23.800 Atomic orbital electron populations 1.22007 0.77569 1.04216 1.02858 1.47976 1.08213 1.04666 1.72182 1.20503 0.87438 0.85341 0.75194 1.90734 1.15368 1.87363 1.51127 1.22421 1.02160 0.87740 1.06650 0.82155 1.23065 1.03219 0.99942 0.89789 1.20529 0.89417 0.95273 1.01713 1.21916 0.98377 0.94567 0.96220 1.21108 0.90623 1.01458 0.98222 1.20967 0.95138 0.98230 0.96537 1.20820 0.91740 1.01429 1.00854 1.21251 1.00384 0.97131 0.95527 1.21179 0.95584 1.00705 0.99837 1.20496 0.92887 0.95783 0.99138 1.19752 0.93616 0.97372 0.96516 1.23195 0.96629 0.81473 0.97414 1.22444 0.96750 0.84649 0.92167 1.45999 1.82490 1.02489 1.05374 1.19387 1.38647 0.81458 0.97312 0.89754 1.25697 1.01899 1.02740 0.95312 1.70021 1.54891 1.35183 0.99772 0.85018 0.77745 0.79323 0.76989 1.20969 1.22030 1.19236 1.23048 0.99032 0.85753 0.93258 0.91896 0.91633 0.87446 0.83586 0.90169 0.88492 0.87888 0.88606 0.90119 0.84319 0.84290 0.86222 0.88906 0.89451 0.94318 0.94980 0.94049 0.93609 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.75 8.86 127.77 1.13 2.89 16 2 N -0.60 -19.09 3.09 -828.30 -2.56 -21.65 16 3 C 0.53 16.45 7.45 87.66 0.65 17.10 16 4 O -0.57 -22.22 11.27 -3.05 -0.03 -22.26 16 5 C -0.17 -3.47 5.15 -11.70 -0.06 -3.53 16 6 H 0.16 2.13 6.44 -2.38 -0.02 2.11 16 7 C -0.12 -2.16 9.93 30.43 0.30 -1.86 16 8 C -0.07 -1.38 2.34 -53.03 -0.12 -1.50 16 9 C -0.07 -0.92 6.85 31.37 0.21 -0.71 16 10 C -0.08 -1.19 6.77 30.58 0.21 -0.98 16 11 C -0.11 -2.56 6.15 -19.54 -0.12 -2.68 16 12 C -0.13 -2.98 10.03 22.29 0.22 -2.76 16 13 C -0.13 -3.08 10.05 22.24 0.22 -2.85 16 14 C -0.15 -4.50 10.05 22.24 0.22 -4.28 16 15 C -0.06 -2.04 7.44 22.30 0.17 -1.88 16 16 C -0.07 -1.97 4.86 -19.73 -0.10 -2.06 16 17 C 0.12 4.89 4.40 46.75 0.21 5.10 16 18 C 0.17 8.12 6.88 86.44 0.59 8.72 16 19 N -0.64 -33.80 3.70 -716.70 -2.65 -36.45 16 20 C -0.24 -13.83 10.70 84.04 0.90 -12.93 16 21 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 22 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 23 N -0.95 -58.05 11.51 21.65 0.25 -57.80 16 24 Si 0.98 46.23 29.56 68.60 2.03 48.26 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 C 0.12 4.90 8.46 86.49 0.73 5.63 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.69 6.35 -2.39 -0.02 1.68 16 31 H 0.11 1.58 5.99 -2.38 -0.01 1.57 16 32 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.78 8.13 -2.39 -0.02 1.76 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.81 8.12 -2.39 -0.02 0.79 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.09 3.23 7.21 -2.91 -0.02 3.21 16 42 H 0.09 4.09 7.22 -2.38 -0.02 4.08 16 43 H 0.04 1.84 6.83 -2.38 -0.02 1.82 16 44 H 0.03 1.80 7.37 -2.39 -0.02 1.78 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.06 2.26 6.84 -2.38 -0.02 2.25 16 Total: -1.00 -76.51 371.99 3.84 -72.68 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.97 Total: 18.99 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 5.84 Total: -1.76 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -4.96 Total: -115.91 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.03 Total: -22.26 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -76.51 3.84 -72.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044123670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.258 kcal (2) G-P(sol) polarization free energy of solvation -76.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds