Wall clock time and date at job start Tue Mar 31 2020 14:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99837 * 2 1 4 4 O 1.21286 * 120.00021 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00203 * 359.97438 * 3 2 1 6 6 H 1.09002 * 115.55643 * 28.50080 * 5 3 2 7 7 C 1.53123 * 117.51430 * 174.24479 * 5 3 2 8 8 C 1.52379 * 59.84867 * 107.44551 * 7 5 3 9 9 C 1.53788 * 121.20156 * 249.48464 * 8 7 5 10 10 C 1.54482 * 102.20422 * 189.98486 * 9 8 7 11 11 C 1.51424 * 105.23606 * 25.73321 * 10 9 8 12 12 C 1.38453 * 130.36570 * 163.17714 * 11 10 9 13 13 C 1.38102 * 120.26907 * 179.97438 * 12 11 10 14 14 C 1.38247 * 119.91090 * 359.97438 * 13 12 11 15 15 C 1.38080 * 119.93875 * 0.02562 * 14 13 12 16 16 C 1.38387 * 109.79696 * 343.13768 * 11 10 9 17 17 C 1.46503 * 120.00223 * 180.02562 * 2 1 3 18 18 C 1.53493 * 114.20208 * 299.99632 * 17 2 1 19 19 N 1.47069 * 87.98600 * 87.52052 * 18 17 2 20 20 C 1.36942 * 136.05871 * 207.08069 * 19 18 17 21 21 H 1.08003 * 119.99612 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99763 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99707 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47049 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47156 * 120.00072 * 24 22 20 27 27 H 1.48494 * 109.47369 * 240.00250 * 24 22 20 28 28 C 1.47068 * 87.88366 * 27.11781 * 19 18 17 29 29 H 1.09009 * 109.46799 * 269.99929 * 1 2 3 30 30 H 1.09000 * 109.47243 * 29.99736 * 1 2 3 31 31 H 1.08997 * 109.47036 * 150.00342 * 1 2 3 32 32 H 1.09004 * 117.51349 * 214.88633 * 7 5 3 33 33 H 1.08996 * 117.51657 * 359.95845 * 7 5 3 34 34 H 1.08996 * 110.85517 * 308.16457 * 9 8 7 35 35 H 1.09004 * 110.85433 * 71.80706 * 9 8 7 36 36 H 1.09004 * 110.28849 * 144.67438 * 10 9 8 37 37 H 1.08994 * 110.29086 * 266.79274 * 10 9 8 38 38 H 1.08009 * 119.86927 * 359.93565 * 12 11 10 39 39 H 1.08000 * 120.04403 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.03038 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.85984 * 180.02562 * 15 14 13 42 42 H 1.08998 * 113.41255 * 166.79466 * 17 2 1 43 43 H 1.09000 * 113.47204 * 332.74046 * 18 17 2 44 44 H 1.09003 * 113.46728 * 202.29762 * 18 17 2 45 45 H 0.96996 * 119.99563 * 179.97438 * 23 22 20 46 46 H 1.09004 * 113.46823 * 87.66323 * 28 19 18 47 47 H 1.09002 * 113.46692 * 218.09867 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.4016 2.4476 0.4683 7 6 2.2018 3.7606 0.1356 8 6 1.5709 3.3920 -1.2016 9 6 2.4357 2.9689 -2.4008 10 6 1.4093 2.9562 -3.5553 11 6 0.3279 3.9301 -3.1370 12 6 -0.6601 4.5483 -3.8845 13 6 -1.5517 5.4128 -3.2804 14 6 -1.4585 5.6622 -1.9238 15 6 -0.4742 5.0470 -1.1760 16 6 0.4216 4.1796 -1.7791 17 6 2.1975 -1.2687 -0.0006 18 6 1.9061 -2.1642 1.2115 19 7 0.7743 -2.7259 0.4589 20 6 -0.4280 -3.3027 0.7706 21 1 -0.7171 -3.4237 1.8041 22 6 -1.2756 -3.7308 -0.2420 23 7 -0.9235 -3.5829 -1.5015 24 14 -2.9160 -4.5169 0.1832 25 1 -3.0736 -4.5662 1.6590 26 1 -4.0174 -3.7132 -0.4052 27 1 -2.9614 -5.8958 -0.3662 28 6 1.5023 -2.3965 -0.7757 29 1 -0.3633 0.0000 1.0278 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.7547 4.5835 0.6935 33 1 3.2836 3.6639 0.2263 34 1 3.2224 3.6995 -2.5889 35 1 2.8564 1.9755 -2.2446 36 1 1.8785 3.2873 -4.4818 37 1 0.9913 1.9572 -3.6784 38 1 -0.7335 4.3542 -4.9444 39 1 -2.3207 5.8934 -3.8670 40 1 -2.1550 6.3376 -1.4494 41 1 -0.4028 5.2425 -0.1162 42 1 3.2574 -1.1568 -0.2290 43 1 1.6040 -1.6085 2.0992 44 1 2.6943 -2.8890 1.4153 45 1 -1.5156 -3.8824 -2.2090 46 1 2.1830 -3.1831 -1.1013 47 1 0.8570 -2.0382 -1.5778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044123671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:45 Heat of formation + Delta-G solvation = 88.375876 kcal Electronic energy + Delta-G solvation = -28167.651205 eV Core-core repulsion = 24511.367751 eV Total energy + Delta-G solvation = -3656.283454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87769 -39.56902 -38.06378 -36.45441 -34.01646 -33.80086 -32.09966 -30.74389 -28.94163 -28.01978 -26.13205 -25.36972 -24.60003 -24.32515 -22.80286 -22.51229 -21.09246 -20.17293 -19.17884 -18.00672 -17.09787 -16.64248 -16.46082 -15.62303 -15.34810 -15.18488 -15.02514 -14.80237 -14.42657 -14.02732 -13.85297 -13.67971 -13.24629 -12.80589 -12.72729 -12.61760 -12.48039 -12.27510 -12.00136 -11.79800 -11.61599 -11.50216 -11.31843 -11.15201 -10.98493 -10.92700 -10.87075 -10.65284 -10.41320 -10.28122 -10.09173 -9.88679 -9.49825 -9.44654 -8.89587 -8.85704 -8.47237 -7.93474 -6.94687 -5.83994 -3.16402 1.18926 1.29641 2.76032 3.33549 3.38734 3.40519 3.42396 3.60555 4.03291 4.32291 4.36568 4.40138 4.62582 4.79381 4.85990 4.90995 4.97297 5.07828 5.23452 5.24454 5.39696 5.41817 5.42913 5.50651 5.53122 5.60746 5.70517 5.81927 5.86474 5.92076 5.98087 6.02321 6.10434 6.13135 6.15873 6.19820 6.27698 6.38417 6.40588 6.46529 6.55882 6.59796 6.72786 6.89342 6.99503 7.13239 7.28543 7.49260 7.88615 8.00506 8.59552 8.97181 9.63021 10.56846 11.32949 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003767 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.928053 B = 7430.838492 C = 8623.493111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.569 5.569 3 C 0.542 3.458 4 O -0.554 6.554 5 C -0.164 4.164 6 H 0.123 0.877 7 C -0.131 4.131 8 C -0.060 4.060 9 C -0.086 4.086 10 C -0.083 4.083 11 C -0.084 4.084 12 C -0.109 4.109 13 C -0.119 4.119 14 C -0.123 4.123 15 C -0.103 4.103 16 C -0.060 4.060 17 C 0.083 3.917 18 C 0.105 3.895 19 N -0.607 5.607 20 C -0.214 4.214 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.145 3.855 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.254 0.746 46 H 0.037 0.963 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 18.412 -2.582 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.298 5.298 3 C 0.330 3.670 4 O -0.433 6.433 5 C -0.185 4.185 6 H 0.141 0.859 7 C -0.169 4.169 8 C -0.061 4.061 9 C -0.123 4.123 10 C -0.120 4.120 11 C -0.084 4.084 12 C -0.127 4.127 13 C -0.137 4.137 14 C -0.141 4.141 15 C -0.121 4.121 16 C -0.060 4.060 17 C -0.022 4.022 18 C -0.022 4.022 19 N -0.333 5.333 20 C -0.342 4.342 21 H 0.098 0.902 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 C 0.018 3.982 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.116 0.884 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.502 18.212 -2.642 18.572 hybrid contribution -1.235 -0.742 0.334 1.479 sum 1.267 17.470 -2.308 17.667 Atomic orbital electron populations 1.21928 0.78307 1.04057 1.01936 1.47249 1.07570 1.04483 1.70515 1.19433 0.87125 0.84171 0.76222 1.90631 1.13724 1.87400 1.51593 1.22359 1.01960 0.90497 1.03694 0.85918 1.22956 1.00649 0.95842 0.97419 1.20229 0.96441 0.99496 0.89948 1.21855 0.96327 1.02780 0.91374 1.21113 0.93806 0.98392 0.98701 1.20615 0.96551 0.97064 0.94152 1.20616 0.94945 0.97411 0.99777 1.21032 0.98997 0.98638 0.95025 1.20984 0.98442 1.00465 0.94234 1.20592 0.94812 0.96876 0.99815 1.19688 0.95528 0.96706 0.94117 1.22666 0.95646 0.83567 1.00334 1.22840 0.90896 0.93487 0.95013 1.45725 1.14060 1.71365 1.02152 1.18960 0.90322 1.32328 0.92554 0.90167 1.24746 0.98780 1.01529 0.95198 1.69820 1.36927 1.51940 0.97980 0.86094 0.83582 0.78882 0.77517 1.20500 1.21676 1.21761 1.22473 0.92429 0.90825 0.92459 0.93301 0.93009 0.86839 0.88019 0.86923 0.90255 0.89622 0.90511 0.89637 0.86207 0.85980 0.85963 0.86369 0.88358 0.94069 0.93999 0.93617 0.94523 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 9.08 59.85 0.54 2.03 16 2 N -0.57 -10.54 3.11 -173.71 -0.54 -11.08 16 3 C 0.54 9.41 6.32 -10.98 -0.07 9.34 16 4 O -0.55 -10.73 15.09 5.55 0.08 -10.65 16 5 C -0.16 -2.30 4.84 -92.01 -0.45 -2.75 16 6 H 0.12 1.63 6.97 -51.93 -0.36 1.27 16 7 C -0.13 -1.57 9.74 -26.99 -0.26 -1.83 16 8 C -0.06 -0.77 2.34 -155.81 -0.36 -1.14 16 9 C -0.09 -1.09 6.64 -25.54 -0.17 -1.26 16 10 C -0.08 -0.98 6.77 -26.75 -0.18 -1.16 16 11 C -0.08 -1.02 6.14 -104.13 -0.64 -1.66 16 12 C -0.11 -1.19 10.03 -39.55 -0.40 -1.58 16 13 C -0.12 -1.17 10.05 -39.63 -0.40 -1.57 16 14 C -0.12 -1.22 10.04 -39.64 -0.40 -1.62 16 15 C -0.10 -1.13 9.98 -39.54 -0.39 -1.52 16 16 C -0.06 -0.75 5.93 -104.41 -0.62 -1.36 16 17 C 0.08 1.64 4.68 -67.81 -0.32 1.32 16 18 C 0.11 2.18 8.32 -8.51 -0.07 2.10 16 19 N -0.61 -14.74 2.50 -184.78 -0.46 -15.20 16 20 C -0.21 -5.68 10.36 -15.06 -0.16 -5.84 16 21 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 23 N -0.92 -25.80 11.51 55.49 0.64 -25.16 16 24 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 C 0.14 3.28 6.42 -8.51 -0.05 3.23 16 29 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.05 0.84 6.53 -51.93 -0.34 0.50 16 31 H 0.11 2.55 5.36 -51.93 -0.28 2.28 16 32 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.11 1.43 7.69 -51.93 -0.40 1.03 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.26 6.38 -51.93 -0.33 0.93 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.10 8.05 -52.49 -0.42 0.67 16 42 H 0.10 1.88 7.30 -51.93 -0.38 1.50 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 1.93 6.23 -51.93 -0.32 1.61 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -29.96 376.20 -11.16 -41.12 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.03 Total: 4.53 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -4.49 Total: -5.53 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.36 Total: -51.45 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.96 -11.16 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044123671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.493 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds