Wall clock time and date at job start Tue Mar 31 2020 14:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99837 * 2 1 4 4 O 1.21286 * 120.00021 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00203 * 359.97438 * 3 2 1 6 6 H 1.09002 * 115.55643 * 28.50080 * 5 3 2 7 7 C 1.53123 * 117.51430 * 174.24479 * 5 3 2 8 8 C 1.52379 * 59.84867 * 107.44551 * 7 5 3 9 9 C 1.53788 * 121.20156 * 249.48464 * 8 7 5 10 10 C 1.54482 * 102.20422 * 189.98486 * 9 8 7 11 11 C 1.51424 * 105.23606 * 25.73321 * 10 9 8 12 12 C 1.38453 * 130.36570 * 163.17714 * 11 10 9 13 13 C 1.38102 * 120.26907 * 179.97438 * 12 11 10 14 14 C 1.38247 * 119.91090 * 359.97438 * 13 12 11 15 15 C 1.38080 * 119.93875 * 0.02562 * 14 13 12 16 16 C 1.38387 * 109.79696 * 343.13768 * 11 10 9 17 17 C 1.46503 * 120.00223 * 180.02562 * 2 1 3 18 18 C 1.53493 * 114.20208 * 299.99632 * 17 2 1 19 19 N 1.47069 * 87.98600 * 87.52052 * 18 17 2 20 20 C 1.36942 * 136.05871 * 207.08069 * 19 18 17 21 21 H 1.08003 * 119.99612 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99763 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99707 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47049 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47156 * 120.00072 * 24 22 20 27 27 H 1.48494 * 109.47369 * 240.00250 * 24 22 20 28 28 C 1.47068 * 87.88366 * 27.11781 * 19 18 17 29 29 H 1.09009 * 109.46799 * 269.99929 * 1 2 3 30 30 H 1.09000 * 109.47243 * 29.99736 * 1 2 3 31 31 H 1.08997 * 109.47036 * 150.00342 * 1 2 3 32 32 H 1.09004 * 117.51349 * 214.88633 * 7 5 3 33 33 H 1.08996 * 117.51657 * 359.95845 * 7 5 3 34 34 H 1.08996 * 110.85517 * 308.16457 * 9 8 7 35 35 H 1.09004 * 110.85433 * 71.80706 * 9 8 7 36 36 H 1.09004 * 110.28849 * 144.67438 * 10 9 8 37 37 H 1.08994 * 110.29086 * 266.79274 * 10 9 8 38 38 H 1.08009 * 119.86927 * 359.93565 * 12 11 10 39 39 H 1.08000 * 120.04403 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.03038 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.85984 * 180.02562 * 15 14 13 42 42 H 1.08998 * 113.41255 * 166.79466 * 17 2 1 43 43 H 1.09000 * 113.47204 * 332.74046 * 18 17 2 44 44 H 1.09003 * 113.46728 * 202.29762 * 18 17 2 45 45 H 0.96996 * 119.99563 * 179.97438 * 23 22 20 46 46 H 1.09004 * 113.46823 * 87.66323 * 28 19 18 47 47 H 1.09002 * 113.46692 * 218.09867 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.4016 2.4476 0.4683 7 6 2.2018 3.7606 0.1356 8 6 1.5709 3.3920 -1.2016 9 6 2.4357 2.9689 -2.4008 10 6 1.4093 2.9562 -3.5553 11 6 0.3279 3.9301 -3.1370 12 6 -0.6601 4.5483 -3.8845 13 6 -1.5517 5.4128 -3.2804 14 6 -1.4585 5.6622 -1.9238 15 6 -0.4742 5.0470 -1.1760 16 6 0.4216 4.1796 -1.7791 17 6 2.1975 -1.2687 -0.0006 18 6 1.9061 -2.1642 1.2115 19 7 0.7743 -2.7259 0.4589 20 6 -0.4280 -3.3027 0.7706 21 1 -0.7171 -3.4237 1.8041 22 6 -1.2756 -3.7308 -0.2420 23 7 -0.9235 -3.5829 -1.5015 24 14 -2.9160 -4.5169 0.1832 25 1 -3.0736 -4.5662 1.6590 26 1 -4.0174 -3.7132 -0.4052 27 1 -2.9614 -5.8958 -0.3662 28 6 1.5023 -2.3965 -0.7757 29 1 -0.3633 0.0000 1.0278 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.7547 4.5835 0.6935 33 1 3.2836 3.6639 0.2263 34 1 3.2224 3.6995 -2.5889 35 1 2.8564 1.9755 -2.2446 36 1 1.8785 3.2873 -4.4818 37 1 0.9913 1.9572 -3.6784 38 1 -0.7335 4.3542 -4.9444 39 1 -2.3207 5.8934 -3.8670 40 1 -2.1550 6.3376 -1.4494 41 1 -0.4028 5.2425 -0.1162 42 1 3.2574 -1.1568 -0.2290 43 1 1.6040 -1.6085 2.0992 44 1 2.6943 -2.8890 1.4153 45 1 -1.5156 -3.8824 -2.2090 46 1 2.1830 -3.1831 -1.1013 47 1 0.8570 -2.0382 -1.5778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044123671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:44 Heat of formation + Delta-G solvation = 74.907700 kcal Electronic energy + Delta-G solvation = -28168.235229 eV Core-core repulsion = 24511.367751 eV Total energy + Delta-G solvation = -3656.867478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97213 -40.90839 -39.50025 -37.55152 -35.58787 -34.77815 -34.05149 -31.56294 -29.89929 -29.79457 -27.70973 -26.59819 -26.35163 -25.53959 -24.17975 -23.61789 -21.93508 -21.42950 -20.44648 -19.51223 -18.73109 -18.17236 -17.48098 -17.09713 -16.74572 -16.32483 -16.22202 -15.91582 -15.67543 -15.59147 -15.27893 -14.83637 -14.56515 -14.32011 -14.02795 -13.96730 -13.54199 -13.37270 -13.26246 -13.16205 -13.02656 -12.82087 -12.69472 -12.64158 -12.48901 -12.42821 -12.00385 -11.96522 -11.73999 -11.69677 -11.40029 -11.33723 -11.25179 -11.02989 -10.73700 -9.68598 -9.52730 -9.31480 -8.91962 -7.88840 -5.22144 0.35597 0.49914 1.46745 1.46998 1.48571 1.57555 1.97311 2.47266 2.69476 3.05433 3.26550 3.33477 3.44857 3.48731 3.60980 3.70557 3.81216 3.87358 4.04161 4.20323 4.23283 4.35006 4.40512 4.42263 4.45208 4.50196 4.56485 4.67615 4.71292 4.75601 4.78589 4.84613 4.88222 4.91580 4.97792 5.04428 5.09368 5.10046 5.16495 5.22324 5.28660 5.30160 5.47489 5.58111 5.63686 5.71084 5.76409 5.89697 6.12459 6.52906 6.91588 7.16521 7.60475 8.59807 9.27968 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003767 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.928053 B = 7430.838492 C = 8623.493111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.576 5.576 3 C 0.544 3.456 4 O -0.575 6.575 5 C -0.178 4.178 6 H 0.133 0.867 7 C -0.114 4.114 8 C -0.057 4.057 9 C -0.087 4.087 10 C -0.081 4.081 11 C -0.103 4.103 12 C -0.121 4.121 13 C -0.120 4.120 14 C -0.125 4.125 15 C -0.109 4.109 16 C -0.078 4.078 17 C 0.102 3.898 18 C 0.109 3.891 19 N -0.625 5.625 20 C -0.220 4.220 21 H 0.082 0.918 22 C -0.054 4.054 23 N -0.948 5.948 24 Si 0.970 3.030 25 H -0.268 1.268 26 H -0.291 1.291 27 H -0.297 1.297 28 C 0.147 3.853 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.135 0.865 42 H 0.107 0.893 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.248 0.752 46 H 0.030 0.970 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 20.694 -1.785 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.305 5.305 3 C 0.334 3.666 4 O -0.456 6.456 5 C -0.199 4.199 6 H 0.150 0.850 7 C -0.151 4.151 8 C -0.057 4.057 9 C -0.125 4.125 10 C -0.117 4.117 11 C -0.103 4.103 12 C -0.139 4.139 13 C -0.138 4.138 14 C -0.143 4.143 15 C -0.127 4.127 16 C -0.078 4.078 17 C -0.003 4.003 18 C -0.017 4.017 19 N -0.351 5.351 20 C -0.348 4.348 21 H 0.100 0.900 22 C -0.248 4.248 23 N -0.596 5.596 24 Si 0.799 3.201 25 H -0.192 1.192 26 H -0.218 1.218 27 H -0.224 1.224 28 C 0.020 3.980 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.125 0.875 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.615 20.512 -1.820 20.656 hybrid contribution -0.916 -1.396 0.060 1.671 sum 0.699 19.116 -1.760 19.210 Atomic orbital electron populations 1.21679 0.78271 1.03071 1.01573 1.47309 1.07548 1.04544 1.71119 1.19960 0.87007 0.84724 0.74900 1.90613 1.14821 1.87774 1.52419 1.22319 1.02465 0.89329 1.05817 0.84968 1.23064 1.00123 0.95013 0.96921 1.20258 0.96831 0.98795 0.89856 1.21828 0.96904 1.01588 0.92146 1.21056 0.93821 0.97705 0.99166 1.20751 0.97240 0.97714 0.94627 1.20887 0.94833 0.97535 1.00604 1.21404 0.98985 0.97936 0.95479 1.21359 0.98341 1.00284 0.94320 1.20867 0.94557 0.96409 1.00871 1.19745 0.96075 0.97715 0.94234 1.22397 0.95778 0.83519 0.98650 1.22928 0.89995 0.93644 0.95168 1.45887 1.14516 1.71284 1.03459 1.19222 0.91323 1.31592 0.92634 0.90037 1.25432 1.01775 1.02491 0.95107 1.69991 1.37845 1.53110 0.98686 0.85132 0.79869 0.77320 0.77742 1.19231 1.21769 1.22438 1.22375 0.91963 0.91848 0.91767 0.93211 0.90924 0.90772 0.85163 0.87694 0.89040 0.92221 0.88907 0.91378 0.84916 0.83522 0.83389 0.84686 0.87510 0.93611 0.92509 0.94283 0.95194 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.61 9.08 127.77 1.16 4.77 16 2 N -0.58 -21.42 3.11 -821.89 -2.56 -23.98 16 3 C 0.54 18.69 6.32 87.66 0.55 19.25 16 4 O -0.58 -22.20 15.09 -3.05 -0.05 -22.24 16 5 C -0.18 -4.79 4.84 -11.70 -0.06 -4.85 16 6 H 0.13 3.28 6.97 -2.39 -0.02 3.26 16 7 C -0.11 -2.50 9.74 30.43 0.30 -2.20 16 8 C -0.06 -1.38 2.34 -53.03 -0.12 -1.50 16 9 C -0.09 -2.20 6.64 31.36 0.21 -1.99 16 10 C -0.08 -1.89 6.77 30.58 0.21 -1.68 16 11 C -0.10 -2.41 6.14 -19.55 -0.12 -2.53 16 12 C -0.12 -2.41 10.03 22.29 0.22 -2.18 16 13 C -0.12 -2.03 10.05 22.24 0.22 -1.81 16 14 C -0.13 -2.08 10.04 22.23 0.22 -1.85 16 15 C -0.11 -2.09 9.98 22.30 0.22 -1.86 16 16 C -0.08 -1.79 5.93 -19.73 -0.12 -1.90 16 17 C 0.10 4.06 4.68 45.46 0.21 4.28 16 18 C 0.11 4.48 8.32 83.18 0.69 5.18 16 19 N -0.62 -30.76 2.50 -738.52 -1.84 -32.60 16 20 C -0.22 -11.74 10.36 84.03 0.87 -10.87 16 21 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 22 C -0.05 -2.95 5.50 84.86 0.47 -2.49 16 23 N -0.95 -54.61 11.51 21.65 0.25 -54.36 16 24 Si 0.97 44.19 29.55 68.60 2.03 46.22 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 27 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 28 C 0.15 6.89 6.42 83.18 0.53 7.42 16 29 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.07 2.35 6.53 -2.39 -0.02 2.34 16 31 H 0.07 3.44 5.36 -2.39 -0.01 3.42 16 32 H 0.13 2.09 8.13 -2.38 -0.02 2.07 16 33 H 0.10 2.50 7.69 -2.39 -0.02 2.48 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.80 6.38 -2.38 -0.02 1.79 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.14 2.03 8.05 -2.91 -0.02 2.01 16 42 H 0.11 4.09 7.30 -2.39 -0.02 4.08 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 46 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 47 H 0.05 2.67 6.23 -2.39 -0.01 2.66 16 Total: -1.00 -64.89 376.20 4.47 -60.42 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.97 Total: 23.38 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.68 Total: 3.17 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -4.15 Total: -110.95 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -64.89 4.47 -60.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044123671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.330 kcal (2) G-P(sol) polarization free energy of solvation -64.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds