Wall clock time and date at job start Tue Mar 31 2020 14:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34769 * 120.00174 * 2 1 4 4 O 1.21284 * 120.00073 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00196 * 0.02562 * 3 2 1 6 6 H 1.09003 * 115.55998 * 34.41001 * 5 3 2 7 7 C 1.53126 * 117.51433 * 248.68132 * 5 3 2 8 8 C 1.52373 * 117.51609 * 180.15504 * 5 3 2 9 9 C 1.53783 * 121.20498 * 356.92736 * 8 5 3 10 10 C 1.54481 * 102.20695 * 189.99458 * 9 8 5 11 11 C 1.51426 * 105.23376 * 25.72667 * 10 9 8 12 12 C 1.38473 * 130.35958 * 163.14309 * 11 10 9 13 13 C 1.38091 * 120.26445 * 179.86458 * 12 11 10 14 14 C 1.38255 * 119.91551 * 0.09284 * 13 12 11 15 15 C 1.38087 * 119.93530 * 359.97438 * 14 13 12 16 16 C 1.38381 * 109.80146 * 343.13626 * 11 10 9 17 17 C 1.46499 * 120.00043 * 180.02562 * 2 1 3 18 18 C 1.53502 * 114.20702 * 299.99973 * 17 2 1 19 19 N 1.47060 * 87.98422 * 87.51773 * 18 17 2 20 20 C 1.36943 * 136.05443 * 207.08296 * 19 18 17 21 21 H 1.07995 * 119.99904 * 6.59798 * 20 19 18 22 22 C 1.38819 * 119.99608 * 186.58911 * 20 19 18 23 23 N 1.31617 * 119.99960 * 6.45049 * 22 20 19 24 24 Si 1.86803 * 119.99555 * 186.44318 * 22 20 19 25 25 H 1.48505 * 109.46891 * 265.01867 * 24 22 20 26 26 H 1.48499 * 109.47308 * 25.02152 * 24 22 20 27 27 H 1.48499 * 109.46982 * 145.02407 * 24 22 20 28 28 C 1.47068 * 87.88932 * 27.34556 * 19 18 17 29 29 H 1.09000 * 109.46725 * 269.99863 * 1 2 3 30 30 H 1.09004 * 109.47135 * 29.99894 * 1 2 3 31 31 H 1.08996 * 109.47204 * 149.99953 * 1 2 3 32 32 H 1.09001 * 117.51287 * 359.97438 * 7 5 3 33 33 H 1.08991 * 117.51894 * 145.06263 * 7 5 3 34 34 H 1.08995 * 110.85581 * 308.17312 * 9 8 5 35 35 H 1.08999 * 110.85493 * 71.81879 * 9 8 5 36 36 H 1.09004 * 110.28547 * 144.66180 * 10 9 8 37 37 H 1.08998 * 110.29532 * 266.77990 * 10 9 8 38 38 H 1.07993 * 119.86991 * 359.94847 * 12 11 10 39 39 H 1.08003 * 120.04355 * 180.02562 * 13 12 11 40 40 H 1.07992 * 120.03514 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.86008 * 179.97438 * 15 14 13 42 42 H 1.09001 * 113.28344 * 166.92915 * 17 2 1 43 43 H 1.09004 * 113.46293 * 332.73591 * 18 17 2 44 44 H 1.08993 * 113.52252 * 202.30735 * 18 17 2 45 45 H 0.97007 * 119.99472 * 179.97438 * 23 22 20 46 46 H 1.08999 * 113.46669 * 87.43181 * 28 19 18 47 47 H 1.08992 * 113.46792 * 217.87899 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.4479 2.4739 0.5566 7 6 1.4589 3.3320 -1.2644 8 6 2.2038 3.7575 -0.0031 9 6 3.7399 3.7242 0.0632 10 6 4.0891 5.2109 0.2960 11 6 2.8693 5.8058 0.9676 12 6 2.7216 6.9869 1.6751 13 6 1.4939 7.3322 2.2047 14 6 0.4076 6.4950 2.0301 15 6 0.5525 5.3159 1.3262 16 6 1.7824 4.9672 0.7933 17 6 2.1975 -1.2687 -0.0006 18 6 1.9060 -2.1644 1.2115 19 7 0.7742 -2.7259 0.4589 20 6 -0.4281 -3.3026 0.7705 21 1 -0.7650 -3.3280 1.7963 22 6 -1.2138 -3.8544 -0.2321 23 7 -0.7498 -3.9379 -1.4609 24 14 -2.9296 -4.4785 0.1629 25 1 -2.8752 -5.9374 0.4348 26 1 -3.4503 -3.7709 1.3602 27 1 -3.8273 -4.2234 -0.9922 28 6 1.5047 -2.4017 -0.7757 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 2.0525 2.9537 -2.0966 33 1 0.5699 3.8991 -1.5402 34 1 4.0790 3.1107 0.8979 35 1 4.1613 3.3692 -0.8772 36 1 4.9590 5.2973 0.9471 37 1 4.2772 5.7085 -0.6554 38 1 3.5696 7.6414 1.8121 39 1 1.3827 8.2545 2.7555 40 1 -0.5533 6.7629 2.4438 41 1 -0.2968 4.6625 1.1909 42 1 3.2575 -1.1541 -0.2270 43 1 1.6039 -1.6085 2.0992 44 1 2.6936 -2.8894 1.4161 45 1 -1.2988 -4.3238 -2.1615 46 1 2.1872 -3.1890 -1.0957 47 1 0.8609 -2.0481 -1.5809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044123673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:49 Heat of formation + Delta-G solvation = 89.190969 kcal Electronic energy + Delta-G solvation = -27687.522129 eV Core-core repulsion = 24031.274020 eV Total energy + Delta-G solvation = -3656.248109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87820 -39.59436 -38.06905 -36.44981 -34.17775 -33.72189 -32.09118 -30.79393 -28.92890 -28.02316 -26.17433 -25.31361 -24.61866 -24.37153 -22.79934 -22.54087 -21.13454 -20.34549 -19.11013 -18.10554 -17.11787 -16.62639 -16.36415 -15.62581 -15.28388 -15.15038 -14.85547 -14.82960 -14.75671 -13.99150 -13.83228 -13.68100 -13.25965 -12.96787 -12.75010 -12.60996 -12.56573 -12.24891 -11.99530 -11.87653 -11.72289 -11.59652 -11.35142 -11.18278 -11.01735 -10.90919 -10.87714 -10.66945 -10.37163 -10.26450 -10.13016 -9.90188 -9.45645 -9.37774 -8.93934 -8.84500 -8.49114 -7.95899 -6.94881 -5.85696 -3.16763 1.15761 1.24113 2.76733 3.32714 3.35045 3.39766 3.41311 3.52915 4.00115 4.30497 4.36628 4.39966 4.54226 4.80224 4.85089 4.86407 4.95035 5.09418 5.21466 5.23992 5.35214 5.41118 5.41232 5.45114 5.49829 5.58799 5.62340 5.79289 5.82222 5.89267 5.91593 6.00285 6.12088 6.14233 6.18977 6.22887 6.31998 6.34903 6.39298 6.47696 6.55240 6.56116 6.68576 6.84475 6.92141 7.11026 7.27567 7.45684 7.87676 7.98261 8.58783 8.96340 9.62317 10.57354 11.32375 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.002872 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.669825 B = 9746.538277 C =10565.725153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.571 5.571 3 C 0.541 3.459 4 O -0.549 6.549 5 C -0.168 4.168 6 H 0.123 0.877 7 C -0.129 4.129 8 C -0.060 4.060 9 C -0.067 4.067 10 C -0.087 4.087 11 C -0.087 4.087 12 C -0.111 4.111 13 C -0.121 4.121 14 C -0.122 4.122 15 C -0.104 4.104 16 C -0.057 4.057 17 C 0.083 3.917 18 C 0.104 3.896 19 N -0.606 5.606 20 C -0.217 4.217 21 H 0.080 0.920 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.280 1.280 27 H -0.290 1.290 28 C 0.153 3.847 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.254 0.746 46 H 0.041 0.959 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 21.288 2.707 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.301 5.301 3 C 0.329 3.671 4 O -0.429 6.429 5 C -0.189 4.189 6 H 0.141 0.859 7 C -0.166 4.166 8 C -0.061 4.061 9 C -0.104 4.104 10 C -0.124 4.124 11 C -0.087 4.087 12 C -0.129 4.129 13 C -0.139 4.139 14 C -0.140 4.140 15 C -0.122 4.122 16 C -0.057 4.057 17 C -0.022 4.022 18 C -0.024 4.024 19 N -0.332 5.332 20 C -0.344 4.344 21 H 0.098 0.902 22 C -0.203 4.203 23 N -0.565 5.565 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.205 1.205 27 H -0.216 1.216 28 C 0.026 3.974 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.344 21.087 2.643 21.913 hybrid contribution -1.273 -0.705 0.331 1.493 sum 4.070 20.382 2.974 20.996 Atomic orbital electron populations 1.21872 0.78509 1.03644 1.01972 1.47266 1.07494 1.04554 1.70763 1.19484 0.87188 0.84069 0.76319 1.90626 1.13656 1.87225 1.51346 1.22228 1.01854 0.90176 1.04619 0.85913 1.23009 1.02392 1.00517 0.90709 1.20315 0.95172 0.91268 0.99332 1.21760 0.90630 0.94118 1.03906 1.21210 0.95223 0.96044 0.99878 1.20631 0.96191 0.94406 0.97472 1.20603 0.97641 0.96125 0.98569 1.21026 0.92845 0.99727 1.00322 1.21004 0.98898 0.94546 0.99596 1.20648 0.96512 0.96970 0.98105 1.19714 0.93574 0.94802 0.97655 1.22716 0.95681 0.83471 1.00335 1.22847 0.90953 0.93604 0.94978 1.45855 1.14013 1.71236 1.02110 1.18923 0.91082 1.30779 0.93649 0.90195 1.24804 0.99011 1.00599 0.95875 1.69849 1.36423 1.49711 1.00506 0.86153 0.83990 0.78731 0.77210 1.21666 1.20512 1.21590 1.22394 0.92383 0.90681 0.91898 0.93188 0.92868 0.87527 0.87600 0.87736 0.89404 0.90125 0.90687 0.90284 0.86315 0.86029 0.85929 0.86288 0.88283 0.94094 0.94108 0.93568 0.94135 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.44 9.10 59.84 0.54 1.99 16 2 N -0.57 -10.28 3.12 -173.55 -0.54 -10.82 16 3 C 0.54 9.12 7.46 -10.99 -0.08 9.04 16 4 O -0.55 -10.28 13.32 5.55 0.07 -10.20 16 5 C -0.17 -2.25 4.62 -92.03 -0.42 -2.68 16 6 H 0.12 1.53 7.26 -51.93 -0.38 1.15 16 7 C -0.13 -1.48 9.97 -26.90 -0.27 -1.75 16 8 C -0.06 -0.75 2.34 -155.74 -0.36 -1.11 16 9 C -0.07 -0.84 4.96 -25.55 -0.13 -0.96 16 10 C -0.09 -0.89 6.77 -26.75 -0.18 -1.07 16 11 C -0.09 -0.97 6.14 -104.13 -0.64 -1.61 16 12 C -0.11 -1.09 10.04 -39.55 -0.40 -1.48 16 13 C -0.12 -1.10 10.05 -39.63 -0.40 -1.50 16 14 C -0.12 -1.17 10.05 -39.63 -0.40 -1.56 16 15 C -0.10 -1.13 9.98 -39.54 -0.39 -1.52 16 16 C -0.06 -0.69 5.93 -104.41 -0.62 -1.30 16 17 C 0.08 1.62 4.69 -67.67 -0.32 1.30 16 18 C 0.10 2.15 8.31 -8.50 -0.07 2.08 16 19 N -0.61 -14.72 2.47 -184.60 -0.46 -15.18 16 20 C -0.22 -5.75 10.34 -15.05 -0.16 -5.90 16 21 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 23 N -0.92 -26.02 11.81 55.49 0.66 -25.37 16 24 Si 0.91 21.23 29.56 -169.99 -5.02 16.21 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.15 3.46 6.25 -8.36 -0.05 3.41 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.76 6.64 -51.93 -0.35 0.42 16 31 H 0.11 2.27 5.38 -51.93 -0.28 1.99 16 32 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.27 7.21 -51.93 -0.37 0.89 16 35 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 1.15 8.05 -52.48 -0.42 0.72 16 42 H 0.10 1.88 7.29 -51.93 -0.38 1.50 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 1.62 6.71 -51.93 -0.35 1.27 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -30.17 376.03 -11.20 -41.37 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.14 Total: 3.22 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.44 Total: -4.90 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.34 Total: -51.36 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.17 -11.20 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044123673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.564 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds