Wall clock time and date at job start Tue Mar 31 2020 14:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34769 * 120.00174 * 2 1 4 4 O 1.21284 * 120.00073 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00196 * 0.02562 * 3 2 1 6 6 H 1.09003 * 115.55998 * 34.41001 * 5 3 2 7 7 C 1.53126 * 117.51433 * 248.68132 * 5 3 2 8 8 C 1.52373 * 117.51609 * 180.15504 * 5 3 2 9 9 C 1.53783 * 121.20498 * 356.92736 * 8 5 3 10 10 C 1.54481 * 102.20695 * 189.99458 * 9 8 5 11 11 C 1.51426 * 105.23376 * 25.72667 * 10 9 8 12 12 C 1.38473 * 130.35958 * 163.14309 * 11 10 9 13 13 C 1.38091 * 120.26445 * 179.86458 * 12 11 10 14 14 C 1.38255 * 119.91551 * 0.09284 * 13 12 11 15 15 C 1.38087 * 119.93530 * 359.97438 * 14 13 12 16 16 C 1.38381 * 109.80146 * 343.13626 * 11 10 9 17 17 C 1.46499 * 120.00043 * 180.02562 * 2 1 3 18 18 C 1.53502 * 114.20702 * 299.99973 * 17 2 1 19 19 N 1.47060 * 87.98422 * 87.51773 * 18 17 2 20 20 C 1.36943 * 136.05443 * 207.08296 * 19 18 17 21 21 H 1.07995 * 119.99904 * 6.59798 * 20 19 18 22 22 C 1.38819 * 119.99608 * 186.58911 * 20 19 18 23 23 N 1.31617 * 119.99960 * 6.45049 * 22 20 19 24 24 Si 1.86803 * 119.99555 * 186.44318 * 22 20 19 25 25 H 1.48505 * 109.46891 * 265.01867 * 24 22 20 26 26 H 1.48499 * 109.47308 * 25.02152 * 24 22 20 27 27 H 1.48499 * 109.46982 * 145.02407 * 24 22 20 28 28 C 1.47068 * 87.88932 * 27.34556 * 19 18 17 29 29 H 1.09000 * 109.46725 * 269.99863 * 1 2 3 30 30 H 1.09004 * 109.47135 * 29.99894 * 1 2 3 31 31 H 1.08996 * 109.47204 * 149.99953 * 1 2 3 32 32 H 1.09001 * 117.51287 * 359.97438 * 7 5 3 33 33 H 1.08991 * 117.51894 * 145.06263 * 7 5 3 34 34 H 1.08995 * 110.85581 * 308.17312 * 9 8 5 35 35 H 1.08999 * 110.85493 * 71.81879 * 9 8 5 36 36 H 1.09004 * 110.28547 * 144.66180 * 10 9 8 37 37 H 1.08998 * 110.29532 * 266.77990 * 10 9 8 38 38 H 1.07993 * 119.86991 * 359.94847 * 12 11 10 39 39 H 1.08003 * 120.04355 * 180.02562 * 13 12 11 40 40 H 1.07992 * 120.03514 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.86008 * 179.97438 * 15 14 13 42 42 H 1.09001 * 113.28344 * 166.92915 * 17 2 1 43 43 H 1.09004 * 113.46293 * 332.73591 * 18 17 2 44 44 H 1.08993 * 113.52252 * 202.30735 * 18 17 2 45 45 H 0.97007 * 119.99472 * 179.97438 * 23 22 20 46 46 H 1.08999 * 113.46669 * 87.43181 * 28 19 18 47 47 H 1.08992 * 113.46792 * 217.87899 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.4479 2.4739 0.5566 7 6 1.4589 3.3320 -1.2644 8 6 2.2038 3.7575 -0.0031 9 6 3.7399 3.7242 0.0632 10 6 4.0891 5.2109 0.2960 11 6 2.8693 5.8058 0.9676 12 6 2.7216 6.9869 1.6751 13 6 1.4939 7.3322 2.2047 14 6 0.4076 6.4950 2.0301 15 6 0.5525 5.3159 1.3262 16 6 1.7824 4.9672 0.7933 17 6 2.1975 -1.2687 -0.0006 18 6 1.9060 -2.1644 1.2115 19 7 0.7742 -2.7259 0.4589 20 6 -0.4281 -3.3026 0.7705 21 1 -0.7650 -3.3280 1.7963 22 6 -1.2138 -3.8544 -0.2321 23 7 -0.7498 -3.9379 -1.4609 24 14 -2.9296 -4.4785 0.1629 25 1 -2.8752 -5.9374 0.4348 26 1 -3.4503 -3.7709 1.3602 27 1 -3.8273 -4.2234 -0.9922 28 6 1.5047 -2.4017 -0.7757 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 2.0525 2.9537 -2.0966 33 1 0.5699 3.8991 -1.5402 34 1 4.0790 3.1107 0.8979 35 1 4.1613 3.3692 -0.8772 36 1 4.9590 5.2973 0.9471 37 1 4.2772 5.7085 -0.6554 38 1 3.5696 7.6414 1.8121 39 1 1.3827 8.2545 2.7555 40 1 -0.5533 6.7629 2.4438 41 1 -0.2968 4.6625 1.1909 42 1 3.2575 -1.1541 -0.2270 43 1 1.6039 -1.6085 2.0992 44 1 2.6936 -2.8894 1.4161 45 1 -1.2988 -4.3238 -2.1615 46 1 2.1872 -3.1890 -1.0957 47 1 0.8609 -2.0481 -1.5809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044123673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:48 Heat of formation + Delta-G solvation = 75.584741 kcal Electronic energy + Delta-G solvation = -27688.112139 eV Core-core repulsion = 24031.274020 eV Total energy + Delta-G solvation = -3656.838120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.91823 -40.89982 -39.47045 -37.51290 -35.61887 -34.74169 -34.01894 -31.55565 -29.89277 -29.72696 -27.67952 -26.51877 -26.35410 -25.50902 -24.25844 -23.50102 -21.91952 -21.59452 -20.32635 -19.55009 -18.73633 -18.15120 -17.29733 -17.00568 -16.73659 -16.30969 -16.12912 -15.90364 -15.69994 -15.60729 -15.16007 -14.83461 -14.56240 -14.29462 -14.00238 -13.94001 -13.74121 -13.31053 -13.22870 -13.17205 -12.98055 -12.80102 -12.75443 -12.61230 -12.49261 -12.43493 -11.99577 -11.94234 -11.73676 -11.65644 -11.36073 -11.30050 -11.21135 -10.93859 -10.62694 -9.67603 -9.48745 -9.29893 -8.92698 -7.91201 -5.23194 0.39571 0.50597 1.48018 1.48792 1.49056 1.58063 1.98672 2.47686 2.66453 3.07075 3.28151 3.33870 3.44742 3.54828 3.58079 3.75389 3.79679 3.93768 4.11395 4.22905 4.24492 4.37572 4.42094 4.45861 4.49864 4.54421 4.60299 4.70950 4.72923 4.74461 4.80539 4.85452 4.88996 4.94695 5.03170 5.06287 5.15008 5.16516 5.17284 5.28036 5.29653 5.37671 5.46068 5.59696 5.64518 5.71583 5.78275 5.88014 6.13509 6.55837 6.90455 7.20190 7.59449 8.59846 9.27053 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.002872 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.669825 B = 9746.538277 C =10565.725153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.578 5.578 3 C 0.541 3.459 4 O -0.570 6.570 5 C -0.179 4.179 6 H 0.135 0.865 7 C -0.114 4.114 8 C -0.059 4.059 9 C -0.068 4.068 10 C -0.080 4.080 11 C -0.103 4.103 12 C -0.118 4.118 13 C -0.121 4.121 14 C -0.127 4.127 15 C -0.116 4.116 16 C -0.079 4.079 17 C 0.105 3.895 18 C 0.107 3.893 19 N -0.624 5.624 20 C -0.222 4.222 21 H 0.082 0.918 22 C -0.057 4.057 23 N -0.950 5.950 24 Si 0.973 3.027 25 H -0.293 1.293 26 H -0.266 1.266 27 H -0.293 1.293 28 C 0.157 3.843 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.249 0.751 46 H 0.029 0.971 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 23.848 3.742 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.308 5.308 3 C 0.331 3.669 4 O -0.450 6.450 5 C -0.200 4.200 6 H 0.153 0.847 7 C -0.151 4.151 8 C -0.059 4.059 9 C -0.105 4.105 10 C -0.117 4.117 11 C -0.103 4.103 12 C -0.136 4.136 13 C -0.139 4.139 14 C -0.145 4.145 15 C -0.134 4.134 16 C -0.079 4.079 17 C -0.001 4.001 18 C -0.020 4.020 19 N -0.351 5.351 20 C -0.350 4.350 21 H 0.100 0.900 22 C -0.251 4.251 23 N -0.598 5.598 24 Si 0.802 3.198 25 H -0.220 1.220 26 H -0.191 1.191 27 H -0.220 1.220 28 C 0.030 3.970 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.145 0.855 42 H 0.125 0.875 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.685 23.672 3.704 24.414 hybrid contribution -0.989 -1.438 0.058 1.746 sum 3.697 22.234 3.762 22.851 Atomic orbital electron populations 1.21714 0.78110 1.03243 1.01704 1.47342 1.07707 1.04386 1.71328 1.20051 0.87118 0.84651 0.75121 1.90619 1.14762 1.87594 1.52042 1.22179 1.02325 0.88665 1.06785 0.84681 1.23114 1.02943 0.99206 0.89875 1.20368 0.94891 0.90814 0.99874 1.21663 0.91050 0.95424 1.02412 1.21157 0.95464 0.94296 1.00761 1.20820 0.96123 0.95140 0.98170 1.20904 0.98777 0.95882 0.98007 1.21404 0.92353 1.00477 0.99676 1.21333 1.00124 0.94038 0.99025 1.20857 0.96400 0.97778 0.98374 1.19777 0.94494 0.94821 0.98771 1.22401 0.95839 0.83531 0.98332 1.22930 0.90008 0.93770 0.95294 1.46030 1.14506 1.71064 1.03459 1.19205 0.92091 1.29931 0.93727 0.90010 1.25524 1.02410 1.01380 0.95750 1.70014 1.37533 1.50979 1.01288 0.85148 0.79798 0.77738 0.77156 1.22037 1.19065 1.21971 1.22285 0.91840 0.91640 0.91227 0.93300 0.89638 0.91440 0.87906 0.85478 0.91888 0.90908 0.89763 0.89016 0.84365 0.83435 0.83800 0.85538 0.87504 0.93664 0.93005 0.94223 0.95288 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.28 9.10 127.77 1.16 4.45 16 2 N -0.58 -20.68 3.12 -821.40 -2.56 -23.24 16 3 C 0.54 17.97 7.46 87.66 0.65 18.62 16 4 O -0.57 -21.33 13.32 -3.04 -0.04 -21.37 16 5 C -0.18 -4.58 4.62 -11.71 -0.05 -4.63 16 6 H 0.14 3.10 7.26 -2.39 -0.02 3.09 16 7 C -0.11 -2.43 9.97 30.48 0.30 -2.13 16 8 C -0.06 -1.40 2.34 -52.98 -0.12 -1.52 16 9 C -0.07 -1.68 4.96 31.36 0.16 -1.53 16 10 C -0.08 -1.54 6.77 30.58 0.21 -1.33 16 11 C -0.10 -2.11 6.14 -19.54 -0.12 -2.23 16 12 C -0.12 -2.00 10.04 22.29 0.22 -1.77 16 13 C -0.12 -1.83 10.05 22.24 0.22 -1.60 16 14 C -0.13 -2.06 10.05 22.24 0.22 -1.84 16 15 C -0.12 -2.26 9.98 22.30 0.22 -2.04 16 16 C -0.08 -1.75 5.93 -19.73 -0.12 -1.86 16 17 C 0.10 4.11 4.69 45.56 0.21 4.32 16 18 C 0.11 4.41 8.31 83.19 0.69 5.10 16 19 N -0.62 -30.76 2.47 -737.96 -1.82 -32.58 16 20 C -0.22 -11.84 10.34 84.03 0.87 -10.97 16 21 H 0.08 4.24 7.84 -2.91 -0.02 4.21 16 22 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 23 N -0.95 -55.15 11.81 21.65 0.26 -54.90 16 24 Si 0.97 43.98 29.56 68.60 2.03 46.01 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 28 C 0.16 7.31 6.25 83.27 0.52 7.83 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 2.35 6.64 -2.39 -0.02 2.33 16 31 H 0.07 2.93 5.38 -2.39 -0.01 2.92 16 32 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 1.85 7.21 -2.39 -0.02 1.83 16 35 H 0.07 1.86 7.96 -2.39 -0.02 1.84 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.13 2.16 8.05 -2.91 -0.02 2.13 16 42 H 0.11 4.06 7.29 -2.39 -0.02 4.04 16 43 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 44 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 46 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 47 H 0.04 2.16 6.71 -2.39 -0.02 2.14 16 Total: -1.00 -65.53 376.03 4.55 -60.98 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.96 Total: 20.88 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.72 Total: 4.22 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.13 Total: -110.72 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.04 Total: -21.37 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.53 4.55 -60.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044123673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.565 kcal (2) G-P(sol) polarization free energy of solvation -65.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds