Wall clock time and date at job start Tue Mar 31 2020 14:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 120.00006 * 2 1 4 4 O 1.21286 * 119.99520 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.00360 * 359.97438 * 3 2 1 6 6 C 1.54409 * 129.01658 * 179.97438 * 5 3 2 7 7 C 1.54412 * 78.89580 * 180.64781 * 6 5 3 8 8 C 1.50700 * 129.01582 * 180.64736 * 7 6 5 9 9 C 1.38234 * 120.00126 * 180.02562 * 8 7 6 10 10 C 1.38238 * 120.00098 * 180.02562 * 9 8 7 11 11 C 1.38230 * 119.99727 * 359.96652 * 10 9 8 12 12 C 1.38234 * 120.00173 * 0.03348 * 11 10 9 13 13 C 1.38228 * 120.00099 * 359.97129 * 12 11 10 14 14 C 1.54888 * 84.49386 * 43.15481 * 7 6 5 15 15 C 1.54890 * 84.49405 * 318.13638 * 7 6 5 16 16 C 1.46502 * 120.00017 * 179.97438 * 2 1 3 17 17 C 1.53946 * 113.74058 * 38.74354 * 16 2 1 18 18 N 1.47818 * 86.03333 * 222.08584 * 17 16 2 19 19 C 1.36939 * 134.45171 * 204.64337 * 18 17 16 20 20 H 1.07994 * 119.99837 * 173.35038 * 19 18 17 21 21 C 1.38810 * 120.00168 * 353.35017 * 19 18 17 22 22 N 1.31621 * 120.00156 * 5.05899 * 21 19 18 23 23 Si 1.86809 * 120.00091 * 185.06467 * 21 19 18 24 24 H 1.48502 * 109.46937 * 94.98807 * 23 21 19 25 25 H 1.48497 * 109.46865 * 214.98693 * 23 21 19 26 26 H 1.48497 * 109.46618 * 334.98731 * 23 21 19 27 27 C 1.47571 * 91.05189 * 24.55105 * 18 17 16 28 28 H 1.09002 * 109.46975 * 90.00214 * 1 2 3 29 29 H 1.08998 * 109.47765 * 209.99952 * 1 2 3 30 30 H 1.08998 * 109.47156 * 330.00556 * 1 2 3 31 31 H 1.09003 * 114.93581 * 68.15947 * 6 5 3 32 32 H 1.09002 * 114.98759 * 293.13299 * 6 5 3 33 33 H 1.08003 * 120.00173 * 359.96766 * 9 8 7 34 34 H 1.07996 * 120.00039 * 179.69787 * 10 9 8 35 35 H 1.08004 * 120.00058 * 179.97438 * 11 10 9 36 36 H 1.08003 * 120.00189 * 180.02562 * 12 11 10 37 37 H 1.08003 * 120.00369 * 180.02562 * 13 12 11 38 38 H 1.09002 * 114.97804 * 69.39287 * 14 7 6 39 39 H 1.09005 * 114.98088 * 204.56281 * 14 7 6 40 40 H 1.08995 * 114.98019 * 155.42999 * 15 7 6 41 41 H 1.09004 * 114.97664 * 290.60749 * 15 7 6 42 42 H 1.09001 * 112.94535 * 170.33822 * 16 2 1 43 43 H 1.08994 * 113.76852 * 336.34870 * 17 16 2 44 44 H 1.09002 * 113.76773 * 107.75118 * 17 16 2 45 45 H 0.97002 * 119.99983 * 179.97438 * 22 21 19 46 46 H 1.09005 * 113.76903 * 221.15029 * 27 18 17 47 47 H 1.08997 * 113.77346 * 89.76034 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 1.9385 3.9139 -0.0002 7 6 0.4174 4.1789 0.0158 8 6 -0.3164 5.4952 0.0151 9 6 -1.6985 5.5162 0.0317 10 6 -2.3716 6.7236 0.0305 11 6 -1.6625 7.9101 0.0134 12 6 -0.2804 7.8891 -0.0032 13 6 0.3926 6.6818 -0.0021 14 6 0.3810 3.0411 1.0661 15 6 0.3566 3.0264 -1.0172 16 6 2.1975 -1.2687 0.0006 17 6 1.5555 -2.3554 -0.8809 18 7 1.8610 -3.2878 0.2248 19 6 2.0638 -4.6393 0.3111 20 1 2.3836 -5.0788 1.2443 21 6 1.8582 -5.4445 -0.8008 22 7 1.5654 -4.8998 -1.9627 23 14 1.9968 -7.3012 -0.6480 24 1 0.6489 -7.8810 -0.4195 25 1 2.5701 -7.8593 -1.8990 26 1 2.8815 -7.6389 0.4958 27 6 1.8619 -2.1776 1.1970 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 2.4471 4.2113 -0.9172 32 1 2.4651 4.2048 0.9088 33 1 -2.2525 4.5891 0.0446 34 1 -3.4514 6.7399 0.0385 35 1 -2.1883 8.8535 0.0120 36 1 0.2736 8.8162 -0.0161 37 1 1.4725 6.6654 -0.0146 38 1 0.8304 3.2881 2.0280 39 1 -0.5723 2.5187 1.1461 40 1 -0.5982 2.5031 -1.0674 41 1 0.7833 3.2598 -1.9928 42 1 3.2669 -1.1421 -0.1680 43 1 0.4888 -2.2098 -1.0507 44 1 2.1092 -2.5619 -1.7968 45 1 1.4221 -5.4625 -2.7397 46 1 2.6597 -2.2423 1.9369 47 1 0.8854 -1.9797 1.6389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044348812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:32 Heat of formation + Delta-G solvation = 156.923573 kcal Electronic energy + Delta-G solvation = -27013.945777 eV Core-core repulsion = 23360.634774 eV Total energy + Delta-G solvation = -3653.311003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40333 -39.47683 -38.93552 -37.38031 -34.42028 -32.01444 -31.55804 -31.21272 -27.93802 -26.84462 -25.98126 -25.90234 -25.64335 -24.83323 -23.52596 -22.65001 -22.08247 -19.72853 -18.60543 -18.40840 -17.29185 -16.90138 -16.46711 -16.04982 -15.21387 -15.20854 -15.00448 -14.72949 -14.63279 -14.41390 -13.97548 -13.83159 -13.69616 -13.33567 -12.90426 -12.68929 -12.46718 -12.15154 -11.85612 -11.73186 -11.61507 -11.51601 -11.37227 -11.34824 -11.33283 -11.26025 -10.89194 -10.73232 -10.49449 -10.35282 -10.25785 -10.06566 -9.58627 -9.46743 -9.22715 -8.96570 -8.82061 -8.15356 -6.92446 -5.82384 -3.14414 0.99370 1.09826 2.63324 3.18004 3.37984 3.39503 3.43234 3.45181 3.96344 4.07614 4.18393 4.34324 4.37938 4.44185 4.46604 4.68890 4.71739 4.80232 4.87717 5.15126 5.19852 5.20911 5.27779 5.39638 5.40902 5.43074 5.49713 5.54907 5.65743 5.69590 5.71129 5.74156 5.74965 5.79235 5.89726 5.97380 6.08566 6.16477 6.20666 6.23944 6.32827 6.42976 6.56686 6.67720 6.77347 7.17002 7.31052 7.49918 7.74915 7.92429 8.44222 8.99775 9.65832 10.53528 11.35412 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.034337 B = 0.002191 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.251351 B =12777.297846 C =13142.990683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.591 5.591 3 C 0.571 3.429 4 O -0.539 6.539 5 C -0.154 4.154 6 C -0.085 4.085 7 C -0.091 4.091 8 C -0.021 4.021 9 C -0.107 4.107 10 C -0.120 4.120 11 C -0.123 4.123 12 C -0.120 4.120 13 C -0.107 4.107 14 C -0.094 4.094 15 C -0.091 4.091 16 C 0.089 3.911 17 C 0.161 3.839 18 N -0.606 5.606 19 C -0.224 4.224 20 H 0.082 0.918 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.108 3.892 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.255 0.745 46 H 0.047 0.953 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 25.610 3.751 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.322 5.322 3 C 0.357 3.643 4 O -0.416 6.416 5 C -0.157 4.157 6 C -0.123 4.123 7 C -0.091 4.091 8 C -0.021 4.021 9 C -0.125 4.125 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.138 4.138 13 C -0.125 4.125 14 C -0.131 4.131 15 C -0.128 4.128 16 C -0.014 4.014 17 C 0.034 3.966 18 N -0.333 5.333 19 C -0.351 4.351 20 H 0.100 0.900 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.205 1.205 27 C -0.019 4.019 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.691 25.225 3.624 26.619 hybrid contribution -0.208 -1.110 0.010 1.129 sum -7.900 24.115 3.634 25.635 Atomic orbital electron populations 1.21946 0.79926 1.03119 1.02012 1.47914 1.06976 1.05859 1.71495 1.18589 0.86618 0.82855 0.76190 1.90689 1.13564 1.87061 1.50266 1.24178 0.97594 0.93810 1.00134 1.23739 0.94006 0.91933 1.02631 1.22415 0.96629 0.91786 0.98260 1.18338 0.92683 0.91187 0.99934 1.20961 0.93490 0.98283 0.99762 1.21138 0.99961 0.92373 1.00278 1.21177 0.94363 0.98211 1.00383 1.21141 0.94529 0.97807 1.00316 1.21015 1.00157 0.91673 0.99698 1.24650 0.97994 0.94070 0.96417 1.24137 0.97898 0.93974 0.96798 1.24104 0.98059 0.79670 0.99596 1.22602 0.96966 0.83368 0.93617 1.45695 1.82140 1.02254 1.03211 1.18997 1.39084 0.79882 0.97148 0.89993 1.24845 1.01605 0.98208 0.95653 1.69834 1.53506 1.33905 0.99261 0.86088 0.77605 0.84956 0.77076 1.21575 1.21641 1.20466 1.22970 0.98068 0.87326 0.93496 0.92492 0.90371 0.91254 0.90290 0.90272 0.85891 0.85936 0.86145 0.85975 0.85874 0.90149 0.89766 0.89814 0.90278 0.86629 0.94812 0.90917 0.93527 0.93489 0.94663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 8.29 59.84 0.50 1.45 16 2 N -0.59 -9.74 3.09 -175.75 -0.54 -10.28 16 3 C 0.57 9.46 7.78 -10.99 -0.09 9.37 16 4 O -0.54 -10.97 16.57 5.55 0.09 -10.88 16 5 C -0.15 -1.87 2.53 -170.99 -0.43 -2.31 16 6 C -0.09 -0.92 7.33 -26.72 -0.20 -1.11 16 7 C -0.09 -0.84 3.09 -172.26 -0.53 -1.37 16 8 C -0.02 -0.19 5.88 -104.62 -0.62 -0.80 16 9 C -0.11 -0.86 9.74 -39.58 -0.39 -1.24 16 10 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 11 C -0.12 -0.85 10.05 -39.59 -0.40 -1.25 16 12 C -0.12 -0.87 10.05 -39.59 -0.40 -1.27 16 13 C -0.11 -0.89 9.66 -39.59 -0.38 -1.27 16 14 C -0.09 -0.90 7.23 -24.72 -0.18 -1.08 16 15 C -0.09 -0.90 7.36 -25.98 -0.19 -1.09 16 16 C 0.09 1.79 4.40 -70.15 -0.31 1.48 16 17 C 0.16 3.77 6.88 -2.84 -0.02 3.75 16 18 N -0.61 -15.64 3.70 -177.89 -0.66 -16.30 16 19 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 20 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -27.17 11.51 55.49 0.64 -26.53 16 23 Si 0.91 22.10 29.56 -169.99 -5.02 17.07 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.11 2.27 8.45 -2.97 -0.03 2.25 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.09 6.35 -51.93 -0.33 0.76 16 30 H 0.07 0.71 4.19 -51.93 -0.22 0.49 16 31 H 0.08 0.84 7.94 -51.93 -0.41 0.43 16 32 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 33 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 34 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.12 0.59 8.06 -52.48 -0.42 0.16 16 36 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 37 H 0.12 0.91 7.75 -52.48 -0.41 0.50 16 38 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 39 H 0.08 0.70 6.35 -51.93 -0.33 0.37 16 40 H 0.08 0.73 7.37 -51.93 -0.38 0.34 16 41 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 42 H 0.12 2.54 7.22 -51.93 -0.37 2.16 16 43 H 0.03 0.78 6.83 -51.93 -0.35 0.43 16 44 H 0.07 1.91 7.37 -51.93 -0.38 1.53 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.04 0.69 6.84 -51.93 -0.36 0.34 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -33.01 377.34 -10.98 -43.99 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.86 Total: -0.29 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -4.31 Total: -2.47 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.56 Total: -53.11 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.01 -10.98 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044348812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.914 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds