Wall clock time and date at job start Tue Mar 31 2020 14:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99996 * 2 1 4 4 O 1.21569 * 120.00390 * 175.48587 * 3 2 1 5 5 C 1.47690 * 119.99861 * 355.48357 * 3 2 1 6 6 C 1.39742 * 120.00295 * 221.37500 * 5 3 2 7 7 C 1.37605 * 119.99764 * 179.71595 * 6 5 3 8 8 C 1.39716 * 119.99707 * 0.56051 * 7 6 5 9 9 C 1.47674 * 119.99261 * 179.74187 * 8 7 6 10 10 C 1.32286 * 124.59257 * 244.99758 * 9 8 7 11 11 C 1.51108 * 110.81325 * 179.97438 * 10 9 8 12 12 C 1.54589 * 104.82115 * 16.57877 * 11 10 9 13 13 C 1.51107 * 124.59450 * 64.69617 * 9 8 7 14 14 C 1.39704 * 120.01315 * 359.71117 * 8 7 6 15 15 C 1.37600 * 120.00122 * 0.02562 * 14 8 7 16 16 C 1.46500 * 120.00089 * 179.97438 * 2 1 3 17 17 C 1.53497 * 114.20889 * 300.00318 * 16 2 1 18 18 N 1.47069 * 87.98262 * 87.51917 * 17 16 2 19 19 C 1.36933 * 136.05645 * 207.08879 * 18 17 16 20 20 H 1.08008 * 120.00266 * 6.60807 * 19 18 17 21 21 C 1.38814 * 120.00186 * 186.61614 * 19 18 17 22 22 N 1.31616 * 119.99955 * 6.28689 * 21 19 18 23 23 Si 1.86807 * 119.99950 * 186.29009 * 21 19 18 24 24 H 1.48499 * 109.46900 * 265.00741 * 23 21 19 25 25 H 1.48497 * 109.47363 * 25.00776 * 23 21 19 26 26 H 1.48505 * 109.46871 * 145.01056 * 23 21 19 27 27 C 1.47063 * 87.88573 * 27.34014 * 18 17 16 28 28 H 1.08997 * 109.47381 * 275.05406 * 1 2 3 29 29 H 1.09004 * 109.47331 * 35.05213 * 1 2 3 30 30 H 1.09001 * 109.47250 * 155.05299 * 1 2 3 31 31 H 1.08003 * 120.00562 * 0.02562 * 6 5 3 32 32 H 1.07995 * 120.00011 * 180.24958 * 7 6 5 33 33 H 1.08005 * 124.59145 * 359.95648 * 10 9 8 34 34 H 1.09003 * 110.36819 * 135.40697 * 11 10 9 35 35 H 1.08997 * 110.36936 * 257.73505 * 11 10 9 36 36 H 1.08998 * 110.99409 * 93.11980 * 12 11 10 37 37 H 1.09000 * 110.98921 * 216.90401 * 12 11 10 38 38 H 1.09003 * 110.36671 * 282.28612 * 13 9 8 39 39 H 1.09001 * 110.36995 * 44.61478 * 13 9 8 40 40 H 1.07996 * 120.00246 * 179.97438 * 14 8 7 41 41 H 1.07997 * 120.00256 * 179.97438 * 15 14 8 42 42 H 1.08998 * 113.28029 * 166.93281 * 16 2 1 43 43 H 1.08997 * 113.46553 * 332.74035 * 17 16 2 44 44 H 1.08997 * 113.52087 * 202.30462 * 17 16 2 45 45 H 0.96999 * 120.00325 * 180.02562 * 22 21 19 46 46 H 1.09005 * 113.46740 * 87.44330 * 27 18 17 47 47 H 1.09002 * 113.46693 * 217.87161 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1689 0.0829 5 6 1.4039 2.4442 -0.1007 6 6 1.8959 3.4717 -0.9100 7 6 1.2079 4.6594 -1.0084 8 6 0.0236 4.8422 -0.2899 9 6 -0.7116 6.1189 -0.3911 10 6 -0.8869 6.9659 0.6098 11 6 -1.6827 8.1696 0.1613 12 6 -2.3363 7.7374 -1.1713 13 6 -1.3601 6.6377 -1.6534 14 6 -0.4654 3.8172 0.5237 15 6 0.2195 2.6275 0.6180 16 6 2.1975 -1.2687 0.0006 17 6 1.9060 -2.1633 1.2133 18 7 0.7743 -2.7256 0.4610 19 6 -0.4280 -3.3019 0.7730 20 1 -0.7653 -3.3263 1.7988 21 6 -1.2134 -3.8551 -0.2290 22 7 -0.7503 -3.9372 -1.4583 23 14 -2.9277 -4.4828 0.1672 24 1 -2.8702 -5.9416 0.4384 25 1 -3.4488 -3.7767 1.3651 26 1 -3.8268 -4.2290 -0.9872 27 6 1.5049 -2.4022 -0.7736 28 1 -0.3634 0.0905 1.0236 29 1 -0.3634 0.8413 -0.5902 30 1 -0.3634 -0.9318 -0.4334 31 1 2.8134 3.3320 -1.4623 32 1 1.5859 5.4520 -1.6370 33 1 -0.5123 6.8172 1.6118 34 1 -2.4484 8.4140 0.8976 35 1 -1.0231 9.0225 0.0014 36 1 -3.3344 7.3327 -1.0035 37 1 -2.3672 8.5667 -1.8780 38 1 -0.6083 7.0599 -2.3202 39 1 -1.9075 5.8393 -2.1546 40 1 -1.3806 3.9588 1.0793 41 1 -0.1583 1.8352 1.2472 42 1 3.2576 -1.1542 -0.2259 43 1 1.6039 -1.6068 2.1005 44 1 2.6937 -2.8882 1.4186 45 1 -1.2992 -4.3234 -2.1586 46 1 2.1873 -3.1898 -1.0932 47 1 0.8609 -2.0494 -1.5793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044390378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:35 Heat of formation + Delta-G solvation = 78.129994 kcal Electronic energy + Delta-G solvation = -27123.743234 eV Core-core repulsion = 23467.015485 eV Total energy + Delta-G solvation = -3656.727749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.35611 -39.31776 -38.17663 -37.23637 -34.20591 -32.34468 -31.75265 -31.03476 -28.80263 -28.29472 -27.68811 -26.27351 -24.62931 -24.12104 -22.68059 -22.56137 -21.03907 -20.38772 -18.74753 -18.42847 -17.24856 -16.73251 -16.57432 -15.92351 -15.78161 -15.32959 -14.89875 -14.65160 -14.30475 -14.10895 -13.76671 -13.51733 -13.30180 -13.08477 -12.96487 -12.66275 -12.60171 -12.42542 -12.09123 -12.02264 -11.65413 -11.51411 -11.43183 -11.36057 -11.34086 -11.21609 -10.91478 -10.82718 -10.66741 -10.15055 -9.91842 -9.61231 -9.46680 -9.20882 -9.01947 -8.84290 -8.51146 -8.00084 -6.95851 -5.86364 -3.17864 0.82069 1.35505 1.88470 2.96570 3.33097 3.37924 3.39501 3.41187 3.77794 4.22692 4.39227 4.40574 4.69492 4.71430 4.77658 4.87095 4.89868 5.09073 5.21090 5.29049 5.35305 5.39341 5.40315 5.46067 5.48889 5.53087 5.59503 5.63643 5.76645 5.81402 5.88925 5.94113 6.06306 6.10288 6.15040 6.19676 6.28274 6.38478 6.42821 6.46337 6.54048 6.58535 6.67798 6.81626 6.92382 7.09790 7.25440 7.44402 7.86134 7.92761 8.50949 8.95456 9.61420 10.56188 11.31630 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.002899 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.686222 B = 9657.506624 C =11010.498096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.568 5.568 3 C 0.553 3.447 4 O -0.549 6.549 5 C -0.118 4.118 6 C -0.067 4.067 7 C -0.116 4.116 8 C -0.025 4.025 9 C -0.100 4.100 10 C -0.153 4.153 11 C -0.099 4.099 12 C -0.125 4.125 13 C -0.089 4.089 14 C -0.114 4.114 15 C -0.086 4.086 16 C 0.081 3.919 17 C 0.104 3.896 18 N -0.606 5.606 19 C -0.218 4.218 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.279 1.279 26 H -0.289 1.289 27 C 0.153 3.847 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.100 0.900 43 H 0.042 0.958 44 H 0.043 0.957 45 H 0.255 0.745 46 H 0.043 0.957 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 22.399 0.630 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.297 5.297 3 C 0.341 3.659 4 O -0.429 6.429 5 C -0.121 4.121 6 C -0.086 4.086 7 C -0.134 4.134 8 C -0.025 4.025 9 C -0.100 4.100 10 C -0.171 4.171 11 C -0.136 4.136 12 C -0.162 4.162 13 C -0.126 4.126 14 C -0.132 4.132 15 C -0.104 4.104 16 C -0.024 4.024 17 C -0.023 4.023 18 N -0.333 5.333 19 C -0.345 4.345 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.564 5.564 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.205 1.205 26 H -0.216 1.216 27 C 0.026 3.974 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.118 0.882 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.809 22.195 0.600 22.218 hybrid contribution -0.919 -0.734 0.258 1.205 sum -1.728 21.460 0.858 21.547 Atomic orbital electron populations 1.22189 0.78509 1.04990 1.01099 1.47273 1.07554 1.04579 1.70284 1.18337 0.86997 0.83600 0.76971 1.90738 1.13644 1.87405 1.51097 1.20012 0.96403 0.94974 1.00717 1.21079 0.99001 0.91710 0.96767 1.21081 0.94920 0.97337 1.00045 1.18720 0.94329 0.92801 0.96655 1.20680 0.99347 0.93676 0.96261 1.23648 0.99693 0.95381 0.98373 1.21320 0.98469 0.96750 0.97032 1.22465 0.98757 0.98245 0.96744 1.21288 0.97801 0.97963 0.95506 1.21149 1.00258 0.92566 0.99268 1.21599 0.93135 0.97650 0.98064 1.22757 0.95697 0.83336 1.00564 1.22841 0.90969 0.93571 0.94902 1.45882 1.14037 1.71265 1.02116 1.18921 0.91062 1.30874 0.93690 0.90138 1.24814 0.99045 1.00542 0.95873 1.69842 1.36475 1.49618 1.00495 0.86151 0.83938 0.78750 0.77233 1.21651 1.20484 1.21572 1.22408 0.92419 0.90635 0.91915 0.93046 0.92485 0.86860 0.85099 0.85602 0.85618 0.91020 0.90619 0.90948 0.90897 0.90530 0.90851 0.85493 0.84374 0.88205 0.94001 0.93965 0.93526 0.93972 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 8.10 59.85 0.48 1.81 16 2 N -0.57 -10.55 3.12 -174.73 -0.54 -11.10 16 3 C 0.55 10.04 7.31 -12.40 -0.09 9.95 16 4 O -0.55 -11.39 16.47 5.30 0.09 -11.30 16 5 C -0.12 -1.78 5.15 -104.91 -0.54 -2.32 16 6 C -0.07 -0.89 9.63 -39.25 -0.38 -1.27 16 7 C -0.12 -1.32 9.76 -39.26 -0.38 -1.70 16 8 C -0.02 -0.28 5.65 -104.94 -0.59 -0.87 16 9 C -0.10 -0.94 5.49 -102.50 -0.56 -1.51 16 10 C -0.15 -1.29 10.68 -36.04 -0.38 -1.68 16 11 C -0.10 -0.66 6.80 -26.85 -0.18 -0.84 16 12 C -0.12 -0.81 7.18 -24.97 -0.18 -0.99 16 13 C -0.09 -0.71 6.75 -26.76 -0.18 -0.89 16 14 C -0.11 -1.33 9.76 -39.27 -0.38 -1.71 16 15 C -0.09 -1.14 7.60 -39.25 -0.30 -1.44 16 16 C 0.08 1.61 4.67 -67.68 -0.32 1.30 16 17 C 0.10 2.16 8.31 -8.50 -0.07 2.09 16 18 N -0.61 -14.72 2.46 -184.62 -0.45 -15.17 16 19 C -0.22 -5.75 10.18 -15.06 -0.15 -5.90 16 20 H 0.08 2.08 7.84 -52.48 -0.41 1.66 16 21 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 22 N -0.92 -26.00 11.81 55.49 0.66 -25.34 16 23 Si 0.91 21.17 29.56 -169.99 -5.02 16.14 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.15 3.47 6.25 -8.37 -0.05 3.42 16 28 H 0.05 0.86 6.85 -51.93 -0.36 0.51 16 29 H 0.06 0.89 5.99 -51.93 -0.31 0.58 16 30 H 0.11 2.45 5.08 -51.93 -0.26 2.19 16 31 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.14 1.79 5.53 -52.49 -0.29 1.50 16 42 H 0.10 1.93 7.32 -51.93 -0.38 1.55 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.07 1.65 6.79 -51.93 -0.35 1.30 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -30.48 378.71 -10.93 -41.41 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.00 Total: 2.46 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -4.36 Total: -2.80 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.34 Total: -51.61 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.48 -10.93 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044390378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.539 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds