Wall clock time and date at job start Tue Mar 31 2020 14:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99996 * 2 1 4 4 O 1.21569 * 120.00390 * 175.48587 * 3 2 1 5 5 C 1.47690 * 119.99861 * 355.48357 * 3 2 1 6 6 C 1.39742 * 120.00295 * 221.37500 * 5 3 2 7 7 C 1.37605 * 119.99764 * 179.71595 * 6 5 3 8 8 C 1.39716 * 119.99707 * 0.56051 * 7 6 5 9 9 C 1.47674 * 119.99261 * 179.74187 * 8 7 6 10 10 C 1.32286 * 124.59257 * 244.99758 * 9 8 7 11 11 C 1.51108 * 110.81325 * 179.97438 * 10 9 8 12 12 C 1.54589 * 104.82115 * 16.57877 * 11 10 9 13 13 C 1.51107 * 124.59450 * 64.69617 * 9 8 7 14 14 C 1.39704 * 120.01315 * 359.71117 * 8 7 6 15 15 C 1.37600 * 120.00122 * 0.02562 * 14 8 7 16 16 C 1.46500 * 120.00089 * 179.97438 * 2 1 3 17 17 C 1.53497 * 114.20889 * 300.00318 * 16 2 1 18 18 N 1.47069 * 87.98262 * 87.51917 * 17 16 2 19 19 C 1.36933 * 136.05645 * 207.08879 * 18 17 16 20 20 H 1.08008 * 120.00266 * 6.60807 * 19 18 17 21 21 C 1.38814 * 120.00186 * 186.61614 * 19 18 17 22 22 N 1.31616 * 119.99955 * 6.28689 * 21 19 18 23 23 Si 1.86807 * 119.99950 * 186.29009 * 21 19 18 24 24 H 1.48499 * 109.46900 * 265.00741 * 23 21 19 25 25 H 1.48497 * 109.47363 * 25.00776 * 23 21 19 26 26 H 1.48505 * 109.46871 * 145.01056 * 23 21 19 27 27 C 1.47063 * 87.88573 * 27.34014 * 18 17 16 28 28 H 1.08997 * 109.47381 * 275.05406 * 1 2 3 29 29 H 1.09004 * 109.47331 * 35.05213 * 1 2 3 30 30 H 1.09001 * 109.47250 * 155.05299 * 1 2 3 31 31 H 1.08003 * 120.00562 * 0.02562 * 6 5 3 32 32 H 1.07995 * 120.00011 * 180.24958 * 7 6 5 33 33 H 1.08005 * 124.59145 * 359.95648 * 10 9 8 34 34 H 1.09003 * 110.36819 * 135.40697 * 11 10 9 35 35 H 1.08997 * 110.36936 * 257.73505 * 11 10 9 36 36 H 1.08998 * 110.99409 * 93.11980 * 12 11 10 37 37 H 1.09000 * 110.98921 * 216.90401 * 12 11 10 38 38 H 1.09003 * 110.36671 * 282.28612 * 13 9 8 39 39 H 1.09001 * 110.36995 * 44.61478 * 13 9 8 40 40 H 1.07996 * 120.00246 * 179.97438 * 14 8 7 41 41 H 1.07997 * 120.00256 * 179.97438 * 15 14 8 42 42 H 1.08998 * 113.28029 * 166.93281 * 16 2 1 43 43 H 1.08997 * 113.46553 * 332.74035 * 17 16 2 44 44 H 1.08997 * 113.52087 * 202.30462 * 17 16 2 45 45 H 0.96999 * 120.00325 * 180.02562 * 22 21 19 46 46 H 1.09005 * 113.46740 * 87.44330 * 27 18 17 47 47 H 1.09002 * 113.46693 * 217.87161 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1689 0.0829 5 6 1.4039 2.4442 -0.1007 6 6 1.8959 3.4717 -0.9100 7 6 1.2079 4.6594 -1.0084 8 6 0.0236 4.8422 -0.2899 9 6 -0.7116 6.1189 -0.3911 10 6 -0.8869 6.9659 0.6098 11 6 -1.6827 8.1696 0.1613 12 6 -2.3363 7.7374 -1.1713 13 6 -1.3601 6.6377 -1.6534 14 6 -0.4654 3.8172 0.5237 15 6 0.2195 2.6275 0.6180 16 6 2.1975 -1.2687 0.0006 17 6 1.9060 -2.1633 1.2133 18 7 0.7743 -2.7256 0.4610 19 6 -0.4280 -3.3019 0.7730 20 1 -0.7653 -3.3263 1.7988 21 6 -1.2134 -3.8551 -0.2290 22 7 -0.7503 -3.9372 -1.4583 23 14 -2.9277 -4.4828 0.1672 24 1 -2.8702 -5.9416 0.4384 25 1 -3.4488 -3.7767 1.3651 26 1 -3.8268 -4.2290 -0.9872 27 6 1.5049 -2.4022 -0.7736 28 1 -0.3634 0.0905 1.0236 29 1 -0.3634 0.8413 -0.5902 30 1 -0.3634 -0.9318 -0.4334 31 1 2.8134 3.3320 -1.4623 32 1 1.5859 5.4520 -1.6370 33 1 -0.5123 6.8172 1.6118 34 1 -2.4484 8.4140 0.8976 35 1 -1.0231 9.0225 0.0014 36 1 -3.3344 7.3327 -1.0035 37 1 -2.3672 8.5667 -1.8780 38 1 -0.6083 7.0599 -2.3202 39 1 -1.9075 5.8393 -2.1546 40 1 -1.3806 3.9588 1.0793 41 1 -0.1583 1.8352 1.2472 42 1 3.2576 -1.1542 -0.2259 43 1 1.6039 -1.6068 2.1005 44 1 2.6937 -2.8882 1.4186 45 1 -1.2992 -4.3234 -2.1586 46 1 2.1873 -3.1898 -1.0932 47 1 0.8609 -2.0494 -1.5793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044390378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:34 Heat of formation + Delta-G solvation = 64.130402 kcal Electronic energy + Delta-G solvation = -27124.350302 eV Core-core repulsion = 23467.015485 eV Total energy + Delta-G solvation = -3657.334817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.70414 -40.38059 -39.42151 -38.38578 -35.75925 -34.17894 -32.81144 -32.04536 -29.91678 -29.37753 -28.72014 -27.81873 -26.40893 -25.56853 -24.05780 -23.59909 -21.84174 -21.56539 -20.05791 -19.45379 -18.84979 -18.27345 -17.63039 -17.21441 -16.82199 -16.66259 -16.29704 -15.92003 -15.64099 -15.36937 -15.34464 -14.70345 -14.52416 -14.45758 -14.05062 -13.88227 -13.76706 -13.54966 -13.31219 -13.24279 -12.87524 -12.78485 -12.63040 -12.56348 -12.44337 -12.18772 -12.10281 -12.00043 -11.93531 -11.90707 -11.74742 -11.34576 -11.10317 -10.78589 -10.04659 -9.97728 -9.58125 -9.32754 -8.93383 -7.91108 -5.23552 -0.19605 0.39454 1.17230 1.48675 1.49398 1.58656 1.64152 1.96009 2.47808 2.72540 3.29998 3.40335 3.47392 3.60390 3.75988 3.81620 3.91921 3.95749 4.10612 4.23649 4.30878 4.36373 4.40568 4.46705 4.49372 4.51941 4.66070 4.76000 4.78959 4.85567 4.87524 4.89974 4.98760 5.01580 5.03935 5.05682 5.15689 5.18697 5.25890 5.29248 5.34386 5.40408 5.44704 5.45799 5.63591 5.66557 5.87044 5.88094 5.90043 6.43924 6.90056 7.05074 7.59367 8.59168 9.27164 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.002899 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.686222 B = 9657.506624 C =11010.498096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.572 5.572 3 C 0.555 3.445 4 O -0.580 6.580 5 C -0.144 4.144 6 C -0.073 4.073 7 C -0.113 4.113 8 C -0.016 4.016 9 C -0.122 4.122 10 C -0.144 4.144 11 C -0.099 4.099 12 C -0.122 4.122 13 C -0.089 4.089 14 C -0.115 4.115 15 C -0.087 4.087 16 C 0.100 3.900 17 C 0.109 3.891 18 N -0.625 5.625 19 C -0.221 4.221 20 H 0.085 0.915 21 C -0.058 4.058 22 N -0.950 5.950 23 Si 0.973 3.027 24 H -0.293 1.293 25 H -0.265 1.265 26 H -0.294 1.294 27 C 0.157 3.843 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.149 0.851 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.249 0.751 46 H 0.033 0.967 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 24.995 1.509 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.301 5.301 3 C 0.345 3.655 4 O -0.461 6.461 5 C -0.146 4.146 6 C -0.091 4.091 7 C -0.131 4.131 8 C -0.016 4.016 9 C -0.122 4.122 10 C -0.162 4.162 11 C -0.136 4.136 12 C -0.159 4.159 13 C -0.126 4.126 14 C -0.132 4.132 15 C -0.106 4.106 16 C -0.006 4.006 17 C -0.018 4.018 18 N -0.351 5.351 19 C -0.349 4.349 20 H 0.102 0.898 21 C -0.251 4.251 22 N -0.599 5.599 23 Si 0.802 3.198 24 H -0.220 1.220 25 H -0.189 1.189 26 H -0.221 1.221 27 C 0.030 3.970 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.125 0.875 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.986 24.812 1.508 24.937 hybrid contribution -0.523 -1.417 0.019 1.510 sum -2.509 23.396 1.527 23.579 Atomic orbital electron populations 1.22038 0.77977 1.03686 1.01673 1.47329 1.07843 1.04398 1.70559 1.18797 0.86748 0.84232 0.75682 1.90708 1.15031 1.87903 1.52467 1.19852 0.97603 0.93976 1.03213 1.21165 0.99253 0.92082 0.96648 1.21316 0.94701 0.97020 1.00039 1.18993 0.93928 0.93389 0.95314 1.20720 1.00579 0.93382 0.97486 1.23896 0.98550 0.95622 0.98140 1.21378 0.98683 0.96212 0.97290 1.22483 0.98321 0.98178 0.96949 1.21320 0.98143 0.98228 0.94929 1.21369 1.00626 0.91917 0.99323 1.21597 0.92633 0.98471 0.97873 1.22489 0.95830 0.83288 0.98945 1.22915 0.90047 0.93655 0.95136 1.46056 1.14574 1.71112 1.03394 1.19216 0.91975 1.29863 0.93814 0.89767 1.25542 1.02465 1.01381 0.95753 1.70010 1.37593 1.50974 1.01302 0.85144 0.79745 0.77756 0.77183 1.22041 1.18901 1.22085 1.22293 0.91892 0.91547 0.91258 0.92067 0.90496 0.90661 0.85234 0.83322 0.85414 0.89963 0.89560 0.90919 0.89477 0.89907 0.91563 0.83600 0.84373 0.87458 0.93328 0.92688 0.94229 0.94939 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.15 8.10 127.77 1.04 4.19 16 2 N -0.57 -21.40 3.12 -824.99 -2.57 -23.97 16 3 C 0.55 20.20 7.31 86.74 0.63 20.83 16 4 O -0.58 -24.17 16.47 -3.93 -0.06 -24.24 16 5 C -0.14 -4.26 5.15 -20.05 -0.10 -4.37 16 6 C -0.07 -1.89 9.63 22.48 0.22 -1.67 16 7 C -0.11 -2.36 9.76 22.48 0.22 -2.14 16 8 C -0.02 -0.32 5.65 -20.07 -0.11 -0.44 16 9 C -0.12 -1.99 5.49 -18.30 -0.10 -2.09 16 10 C -0.14 -2.03 10.68 24.75 0.26 -1.76 16 11 C -0.10 -1.00 6.80 30.52 0.21 -0.79 16 12 C -0.12 -1.23 7.18 31.73 0.23 -1.01 16 13 C -0.09 -1.20 6.75 30.57 0.21 -0.99 16 14 C -0.11 -2.42 9.76 22.47 0.22 -2.20 16 15 C -0.09 -2.22 7.60 22.48 0.17 -2.04 16 16 C 0.10 4.00 4.67 45.55 0.21 4.21 16 17 C 0.11 4.48 8.31 83.18 0.69 5.17 16 18 N -0.62 -30.69 2.46 -738.02 -1.81 -32.51 16 19 C -0.22 -11.70 10.18 84.03 0.86 -10.84 16 20 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 21 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 22 N -0.95 -55.23 11.81 21.65 0.26 -54.97 16 23 Si 0.97 43.82 29.56 68.60 2.03 45.85 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 27 C 0.16 7.35 6.25 83.27 0.52 7.87 16 28 H 0.06 2.03 6.85 -2.39 -0.02 2.01 16 29 H 0.08 2.40 5.99 -2.38 -0.01 2.38 16 30 H 0.07 3.34 5.08 -2.39 -0.01 3.33 16 31 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.14 3.43 5.53 -2.91 -0.02 3.41 16 42 H 0.11 4.16 7.32 -2.39 -0.02 4.15 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 46 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.04 2.16 6.79 -2.39 -0.02 2.15 16 Total: -1.00 -65.72 378.71 4.63 -61.09 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.97 Total: 19.49 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.83 Total: 9.26 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -4.13 Total: -111.45 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.06 Total: -24.24 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -65.72 4.63 -61.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044390378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.223 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds