Wall clock time and date at job start Tue Mar 31 2020 14:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 102.99976 * 2 1 4 4 C 1.50705 * 109.46957 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00296 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99806 * 179.97438 * 4 3 2 7 7 C 1.46927 * 120.63198 * 0.02562 * 6 4 3 8 8 C 1.53187 * 108.77645 * 126.41113 * 7 6 4 9 9 C 1.53043 * 109.31431 * 54.63673 * 8 7 6 10 10 C 1.53043 * 109.53474 * 298.63712 * 9 8 7 11 11 H 1.09000 * 109.49511 * 301.37403 * 10 9 8 12 12 C 1.52996 * 109.49492 * 181.31344 * 10 9 8 13 13 C 1.53044 * 109.46236 * 60.00007 * 12 10 9 14 14 C 1.53196 * 109.31544 * 181.38237 * 13 12 10 15 15 N 1.46922 * 108.77324 * 305.36632 * 14 13 12 16 16 C 1.36941 * 120.62587 * 233.58200 * 15 14 13 17 17 H 1.07999 * 119.99897 * 31.09533 * 16 15 14 18 18 C 1.38810 * 119.99765 * 211.09939 * 16 15 14 19 19 N 1.31619 * 119.99693 * 198.72880 * 18 16 15 20 20 Si 1.86800 * 120.00207 * 18.72315 * 18 16 15 21 21 H 1.48501 * 109.47212 * 270.00102 * 20 18 16 22 22 H 1.48499 * 109.47177 * 150.00645 * 20 18 16 23 23 H 1.48495 * 109.47256 * 30.00227 * 20 18 16 24 24 C 1.46923 * 118.74337 * 53.85865 * 15 14 13 25 25 C 1.53041 * 109.46150 * 180.02562 * 12 10 9 26 26 C 1.46924 * 120.62813 * 180.02562 * 6 4 3 27 27 H 1.09008 * 109.46828 * 60.00390 * 1 2 3 28 28 H 1.09000 * 109.46615 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47387 * 300.00478 * 1 2 3 30 30 H 1.09002 * 109.47189 * 60.00252 * 3 2 1 31 31 H 1.08993 * 109.47151 * 299.99612 * 3 2 1 32 32 H 1.09006 * 109.58288 * 6.62231 * 7 6 4 33 33 H 1.09002 * 109.70435 * 246.27088 * 7 6 4 34 34 H 1.09000 * 109.49817 * 294.68593 * 8 7 6 35 35 H 1.08997 * 109.49788 * 174.58760 * 8 7 6 36 36 H 1.08993 * 109.46491 * 178.61713 * 9 8 7 37 37 H 1.09001 * 109.44477 * 58.64408 * 9 8 7 38 38 H 1.08999 * 109.46354 * 300.02390 * 12 10 9 39 39 H 1.09006 * 109.49643 * 61.43259 * 13 12 10 40 40 H 1.08999 * 109.49305 * 301.33728 * 13 12 10 41 41 H 1.08998 * 109.58423 * 185.57599 * 14 13 12 42 42 H 1.09000 * 109.70124 * 65.22274 * 14 13 12 43 43 H 0.97001 * 120.00345 * 354.95221 * 19 18 16 44 44 H 1.09004 * 109.58214 * 65.92254 * 24 15 14 45 45 H 1.08996 * 109.58833 * 186.34898 * 24 15 14 46 46 H 1.09007 * 109.49802 * 298.57033 * 25 12 10 47 47 H 1.09000 * 109.49899 * 58.62982 * 25 12 10 48 48 H 1.08997 * 109.58521 * 113.80235 * 26 6 4 49 49 H 1.08996 * 109.58717 * 353.37484 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 8 4.4404 0.9621 0.0006 6 7 4.2575 3.1731 0.0002 7 6 3.3972 4.3642 -0.0003 8 6 3.8063 5.2684 1.1666 9 6 5.3028 5.5739 1.0697 10 6 6.0986 4.2703 1.1667 11 1 5.8699 3.7738 2.1097 12 6 7.5956 4.5799 1.1026 13 6 7.9767 5.4978 2.2664 14 6 9.4689 5.8336 2.1793 15 7 10.2331 4.5800 2.1242 16 6 11.2488 4.3426 3.0115 17 1 11.2029 4.7561 4.0081 18 6 12.3375 3.5706 2.6299 19 7 13.1169 3.0342 3.5449 20 14 12.6962 3.2927 0.8178 21 1 11.9851 2.0745 0.3536 22 1 14.1579 3.1166 0.6239 23 1 12.2308 4.4659 0.0355 24 6 9.8911 3.5886 1.0953 25 6 8.3906 3.2758 1.1990 26 6 5.7155 3.3547 0.0003 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8031 2.2371 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 2.3563 4.0631 0.1182 33 1 3.5169 4.9035 -0.9399 34 1 3.5987 4.7621 2.1093 35 1 3.2413 6.1993 1.1209 36 1 5.5916 6.2371 1.8850 37 1 5.5134 6.0578 0.1160 38 1 7.8238 5.0759 0.1592 39 1 7.7720 4.9926 3.2104 40 1 7.3931 6.4168 2.2111 41 1 9.7667 6.4049 3.0585 42 1 9.6619 6.4191 1.2804 43 1 12.9750 3.2375 4.4827 44 1 10.1159 3.9937 0.1086 45 1 10.4677 2.6782 1.2589 46 1 8.1818 2.7921 2.1533 47 1 8.1014 2.6123 0.3840 48 1 6.0269 3.8108 -0.9394 49 1 6.2042 2.3877 0.1191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047224184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:42 Heat of formation + Delta-G solvation = -24.968356 kcal Electronic energy + Delta-G solvation = -26622.297535 eV Core-core repulsion = 23096.543057 eV Total energy + Delta-G solvation = -3525.754478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.54227 -38.62769 -37.00381 -34.35681 -32.57350 -31.82803 -30.76181 -30.24771 -29.36348 -28.83639 -25.59558 -25.01450 -23.02712 -22.57304 -21.35435 -20.40637 -19.53518 -19.14042 -17.57984 -17.26614 -16.84983 -16.03397 -15.71858 -14.99808 -14.76926 -14.63478 -14.24211 -14.14494 -14.10270 -13.86357 -13.69317 -13.53170 -13.40541 -13.25493 -13.02387 -12.77425 -12.62959 -12.59256 -12.01563 -11.88964 -11.54497 -11.34100 -11.25199 -11.05337 -10.74918 -10.64297 -10.37519 -10.29917 -10.22275 -10.07056 -9.75938 -9.71199 -9.43083 -9.04209 -8.84156 -8.43881 -7.99649 -6.97092 -6.17100 -3.28897 1.09852 2.17040 2.32486 2.73636 3.45725 3.57423 3.73730 4.06446 4.39498 4.51479 4.62922 4.63354 4.67242 4.70929 4.71440 4.73985 4.81420 5.00289 5.08139 5.09723 5.28645 5.30000 5.36956 5.41176 5.51430 5.54545 5.57149 5.71495 5.79348 5.85475 5.89912 5.93919 6.08602 6.15579 6.16538 6.27902 6.33859 6.47625 6.52786 6.63113 6.72332 6.76288 6.80444 7.05787 7.09060 7.87988 8.10205 8.52087 9.13087 9.67450 10.28511 11.19965 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.002840 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.486773 B = 9856.135736 C =10819.790674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.184 6.184 3 C -0.126 4.126 4 C 0.529 3.471 5 O -0.515 6.515 6 N -0.608 5.608 7 C 0.106 3.894 8 C -0.135 4.135 9 C -0.117 4.117 10 C -0.095 4.095 11 H 0.073 0.927 12 C -0.070 4.070 13 C -0.127 4.127 14 C 0.146 3.854 15 N -0.606 5.606 16 C -0.341 4.341 17 H 0.062 0.938 18 C -0.017 4.017 19 N -0.924 5.924 20 Si 1.068 2.932 21 H -0.293 1.293 22 H -0.300 1.300 23 H -0.286 1.286 24 C 0.125 3.875 25 C -0.131 4.131 26 C 0.115 3.885 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.262 0.738 44 H 0.024 0.976 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.543 3.912 -9.160 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.041 5.959 3 C -0.277 4.277 4 C 0.315 3.685 5 O -0.390 6.390 6 N -0.342 5.342 7 C -0.018 4.018 8 C -0.174 4.174 9 C -0.155 4.155 10 C -0.114 4.114 11 H 0.091 0.909 12 C -0.089 4.089 13 C -0.166 4.166 14 C 0.020 3.980 15 N -0.330 5.330 16 C -0.470 4.470 17 H 0.080 0.920 18 C -0.218 4.218 19 N -0.564 5.564 20 Si 0.900 3.100 21 H -0.221 1.221 22 H -0.229 1.229 23 H -0.212 1.212 24 C 0.000 4.000 25 C -0.170 4.170 26 C -0.006 4.006 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.462 1.724 -10.184 28.406 hybrid contribution -2.070 2.062 1.139 3.136 sum -28.532 3.786 -9.044 30.169 Atomic orbital electron populations 1.23540 0.96000 1.06809 1.04778 1.87681 1.04357 1.05910 1.97975 1.23563 0.98022 0.99377 1.06744 1.19627 0.88796 0.83210 0.76889 1.90779 1.61821 1.37925 1.48464 1.48056 1.07724 1.05027 1.73399 1.21790 0.93997 0.86480 0.99487 1.21934 0.97572 0.99438 0.98407 1.21647 0.93479 0.97666 1.02666 1.21583 0.95904 0.95381 0.98562 0.90885 1.21010 0.91689 0.97086 0.99138 1.22081 0.98552 0.98054 0.97935 1.20926 0.89528 0.88823 0.98724 1.44335 1.38128 1.13638 1.36909 1.20210 0.97848 1.35843 0.93143 0.91991 1.26264 0.92751 0.96523 1.06290 1.70900 1.43303 1.40345 1.01824 0.83724 0.74940 0.75834 0.75533 1.22087 1.22852 1.21193 1.21439 0.93276 0.93655 0.91664 1.22193 0.97542 0.95950 1.01347 1.21831 0.78284 1.02005 0.98502 0.90555 0.87701 0.90518 0.87315 0.87361 0.90237 0.90987 0.91470 0.90677 0.90849 0.91749 0.91652 0.92324 0.92778 0.92594 0.96385 0.92796 0.95802 0.90979 0.91908 0.92731 0.91345 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 10.76 101.05 1.09 0.29 16 2 S -0.18 -1.88 21.52 -107.50 -2.31 -4.20 16 3 C -0.13 -1.04 4.77 36.01 0.17 -0.87 16 4 C 0.53 6.41 7.72 -10.98 -0.08 6.32 16 5 O -0.51 -8.63 15.28 5.56 0.08 -8.54 16 6 N -0.61 -6.31 2.97 -172.79 -0.51 -6.83 16 7 C 0.11 0.70 6.34 -3.71 -0.02 0.68 16 8 C -0.14 -0.95 6.08 -26.61 -0.16 -1.11 16 9 C -0.12 -1.08 4.85 -26.69 -0.13 -1.21 16 10 C -0.09 -1.14 1.92 -90.52 -0.17 -1.32 16 11 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 12 C -0.07 -1.04 1.74 -90.58 -0.16 -1.20 16 13 C -0.13 -2.04 5.05 -26.61 -0.13 -2.18 16 14 C 0.15 2.95 6.51 -3.71 -0.02 2.92 16 15 N -0.61 -14.83 2.71 -172.06 -0.47 -15.29 16 16 C -0.34 -9.84 9.88 -15.06 -0.15 -9.99 16 17 H 0.06 1.91 8.06 -52.49 -0.42 1.48 16 18 C -0.02 -0.51 5.24 -17.43 -0.09 -0.60 16 19 N -0.92 -29.37 13.70 55.49 0.76 -28.61 16 20 Si 1.07 27.25 24.73 -169.99 -4.20 23.05 16 21 H -0.29 -7.08 6.56 56.52 0.37 -6.71 16 22 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 23 H -0.29 -6.94 6.80 56.52 0.38 -6.56 16 24 C 0.13 2.79 4.23 -3.49 -0.01 2.77 16 25 C -0.13 -2.37 5.07 -26.39 -0.13 -2.50 16 26 C 0.12 1.40 5.19 -3.73 -0.02 1.38 16 27 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 0.67 7.69 -51.92 -0.40 0.27 16 31 H 0.11 0.62 7.94 -51.93 -0.41 0.21 16 32 H 0.08 0.35 5.93 -51.93 -0.31 0.04 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.70 6.33 -51.93 -0.33 0.37 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.72 6.33 -51.93 -0.33 0.39 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 44 H 0.02 0.52 7.10 -51.93 -0.37 0.15 16 45 H 0.07 1.77 4.76 -51.93 -0.25 1.52 16 46 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 47 H 0.05 0.90 6.49 -51.93 -0.34 0.56 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.10 1.46 5.59 -51.93 -0.29 1.17 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -34.69 375.47 -9.58 -44.27 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -8.55 Total: -2.90 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.04 Total: -6.61 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.22 Total: -50.73 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.08 Total: -8.54 kcal Atomic # 14 Polarization: 27.25 SS G_CDS: -4.20 Total: 23.05 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -2.31 Total: -4.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.69 -9.58 -44.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047224184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.301 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds