Wall clock time and date at job start Tue Mar 31 2020 14:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 102.99976 * 2 1 4 4 C 1.50705 * 109.46957 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00296 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99806 * 179.97438 * 4 3 2 7 7 C 1.46927 * 120.63198 * 0.02562 * 6 4 3 8 8 C 1.53187 * 108.77645 * 126.41113 * 7 6 4 9 9 C 1.53043 * 109.31431 * 54.63673 * 8 7 6 10 10 C 1.53043 * 109.53474 * 298.63712 * 9 8 7 11 11 H 1.09000 * 109.49511 * 301.37403 * 10 9 8 12 12 C 1.52996 * 109.49492 * 181.31344 * 10 9 8 13 13 C 1.53044 * 109.46236 * 60.00007 * 12 10 9 14 14 C 1.53196 * 109.31544 * 181.38237 * 13 12 10 15 15 N 1.46922 * 108.77324 * 305.36632 * 14 13 12 16 16 C 1.36941 * 120.62587 * 233.58200 * 15 14 13 17 17 H 1.07999 * 119.99897 * 31.09533 * 16 15 14 18 18 C 1.38810 * 119.99765 * 211.09939 * 16 15 14 19 19 N 1.31619 * 119.99693 * 198.72880 * 18 16 15 20 20 Si 1.86800 * 120.00207 * 18.72315 * 18 16 15 21 21 H 1.48501 * 109.47212 * 270.00102 * 20 18 16 22 22 H 1.48499 * 109.47177 * 150.00645 * 20 18 16 23 23 H 1.48495 * 109.47256 * 30.00227 * 20 18 16 24 24 C 1.46923 * 118.74337 * 53.85865 * 15 14 13 25 25 C 1.53041 * 109.46150 * 180.02562 * 12 10 9 26 26 C 1.46924 * 120.62813 * 180.02562 * 6 4 3 27 27 H 1.09008 * 109.46828 * 60.00390 * 1 2 3 28 28 H 1.09000 * 109.46615 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47387 * 300.00478 * 1 2 3 30 30 H 1.09002 * 109.47189 * 60.00252 * 3 2 1 31 31 H 1.08993 * 109.47151 * 299.99612 * 3 2 1 32 32 H 1.09006 * 109.58288 * 6.62231 * 7 6 4 33 33 H 1.09002 * 109.70435 * 246.27088 * 7 6 4 34 34 H 1.09000 * 109.49817 * 294.68593 * 8 7 6 35 35 H 1.08997 * 109.49788 * 174.58760 * 8 7 6 36 36 H 1.08993 * 109.46491 * 178.61713 * 9 8 7 37 37 H 1.09001 * 109.44477 * 58.64408 * 9 8 7 38 38 H 1.08999 * 109.46354 * 300.02390 * 12 10 9 39 39 H 1.09006 * 109.49643 * 61.43259 * 13 12 10 40 40 H 1.08999 * 109.49305 * 301.33728 * 13 12 10 41 41 H 1.08998 * 109.58423 * 185.57599 * 14 13 12 42 42 H 1.09000 * 109.70124 * 65.22274 * 14 13 12 43 43 H 0.97001 * 120.00345 * 354.95221 * 19 18 16 44 44 H 1.09004 * 109.58214 * 65.92254 * 24 15 14 45 45 H 1.08996 * 109.58833 * 186.34898 * 24 15 14 46 46 H 1.09007 * 109.49802 * 298.57033 * 25 12 10 47 47 H 1.09000 * 109.49899 * 58.62982 * 25 12 10 48 48 H 1.08997 * 109.58521 * 113.80235 * 26 6 4 49 49 H 1.08996 * 109.58717 * 353.37484 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 8 4.4404 0.9621 0.0006 6 7 4.2575 3.1731 0.0002 7 6 3.3972 4.3642 -0.0003 8 6 3.8063 5.2684 1.1666 9 6 5.3028 5.5739 1.0697 10 6 6.0986 4.2703 1.1667 11 1 5.8699 3.7738 2.1097 12 6 7.5956 4.5799 1.1026 13 6 7.9767 5.4978 2.2664 14 6 9.4689 5.8336 2.1793 15 7 10.2331 4.5800 2.1242 16 6 11.2488 4.3426 3.0115 17 1 11.2029 4.7561 4.0081 18 6 12.3375 3.5706 2.6299 19 7 13.1169 3.0342 3.5449 20 14 12.6962 3.2927 0.8178 21 1 11.9851 2.0745 0.3536 22 1 14.1579 3.1166 0.6239 23 1 12.2308 4.4659 0.0355 24 6 9.8911 3.5886 1.0953 25 6 8.3906 3.2758 1.1990 26 6 5.7155 3.3547 0.0003 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8031 2.2371 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 2.3563 4.0631 0.1182 33 1 3.5169 4.9035 -0.9399 34 1 3.5987 4.7621 2.1093 35 1 3.2413 6.1993 1.1209 36 1 5.5916 6.2371 1.8850 37 1 5.5134 6.0578 0.1160 38 1 7.8238 5.0759 0.1592 39 1 7.7720 4.9926 3.2104 40 1 7.3931 6.4168 2.2111 41 1 9.7667 6.4049 3.0585 42 1 9.6619 6.4191 1.2804 43 1 12.9750 3.2375 4.4827 44 1 10.1159 3.9937 0.1086 45 1 10.4677 2.6782 1.2589 46 1 8.1818 2.7921 2.1533 47 1 8.1014 2.6123 0.3840 48 1 6.0269 3.8108 -0.9394 49 1 6.2042 2.3877 0.1191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047224184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:42 Heat of formation + Delta-G solvation = -47.475403 kcal Electronic energy + Delta-G solvation = -26623.273514 eV Core-core repulsion = 23096.543057 eV Total energy + Delta-G solvation = -3526.730457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42318 -39.89605 -38.21023 -35.79815 -34.02692 -33.04787 -31.99808 -31.63957 -30.27991 -29.51803 -26.66611 -26.37284 -24.29117 -24.15814 -22.57300 -21.63204 -20.83503 -20.12241 -19.35482 -18.38166 -17.63243 -16.92805 -16.77352 -16.38096 -16.04993 -15.76264 -15.54420 -15.35068 -15.13129 -14.84289 -14.68173 -14.58496 -14.50989 -14.13087 -14.08086 -14.02410 -13.65935 -13.45955 -13.38891 -13.10091 -13.03892 -12.57780 -12.48088 -12.15051 -11.94328 -11.84237 -11.66657 -11.61160 -11.46076 -11.38518 -11.19486 -10.98109 -10.90092 -10.83290 -10.55218 -9.67706 -9.10624 -8.73490 -8.47278 -5.58444 0.48585 1.39691 1.47968 1.52070 1.63476 1.70874 1.97355 2.51351 3.08354 3.37309 3.40649 3.66924 3.74759 3.85857 4.00474 4.07903 4.10783 4.13171 4.21937 4.31601 4.36976 4.38000 4.38236 4.40455 4.54823 4.55308 4.60081 4.68819 4.76603 4.84890 4.88058 4.91371 4.92104 4.97678 5.02217 5.06627 5.15108 5.20715 5.23991 5.28494 5.40533 5.46399 5.51523 5.63245 5.76132 6.25744 6.30743 6.91152 7.04818 7.57964 8.08256 8.83409 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.002840 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.486773 B = 9856.135736 C =10819.790674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.282 6.282 3 C -0.102 4.102 4 C 0.518 3.482 5 O -0.575 6.575 6 N -0.604 5.604 7 C 0.099 3.901 8 C -0.131 4.131 9 C -0.115 4.115 10 C -0.082 4.082 11 H 0.049 0.951 12 C -0.063 4.063 13 C -0.114 4.114 14 C 0.139 3.861 15 N -0.623 5.623 16 C -0.328 4.328 17 H 0.026 0.974 18 C -0.074 4.074 19 N -0.960 5.960 20 Si 1.109 2.891 21 H -0.275 1.275 22 H -0.306 1.306 23 H -0.262 1.262 24 C 0.119 3.881 25 C -0.123 4.123 26 C 0.116 3.884 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.246 0.754 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.035 0.965 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.704 6.473 -11.882 35.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.058 6.058 3 C -0.253 4.253 4 C 0.305 3.695 5 O -0.454 6.454 6 N -0.337 5.337 7 C -0.022 4.022 8 C -0.169 4.169 9 C -0.152 4.152 10 C -0.102 4.102 11 H 0.068 0.932 12 C -0.082 4.082 13 C -0.153 4.153 14 C 0.014 3.986 15 N -0.349 5.349 16 C -0.458 4.458 17 H 0.044 0.956 18 C -0.268 4.268 19 N -0.603 5.603 20 Si 0.935 3.065 21 H -0.202 1.202 22 H -0.235 1.235 23 H -0.186 1.186 24 C -0.006 4.006 25 C -0.162 4.162 26 C -0.006 4.006 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.110 0.890 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.112 0.888 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -30.701 4.348 -12.910 33.587 hybrid contribution -0.853 1.326 2.074 2.606 sum -31.554 5.675 -10.836 33.842 Atomic orbital electron populations 1.23536 0.90999 1.07653 1.06418 1.88057 1.09947 1.09553 1.98275 1.23488 0.95022 0.97292 1.09463 1.20357 0.90368 0.82886 0.75843 1.90756 1.63482 1.39961 1.51211 1.48163 1.07357 1.05916 1.72235 1.22153 0.94764 0.84950 1.00330 1.21923 0.96121 1.00768 0.98054 1.21648 0.94624 0.95486 1.03478 1.21397 0.94209 0.97117 0.97465 0.93206 1.20963 0.93189 0.94798 0.99274 1.21950 0.95975 0.99915 0.97472 1.21149 0.91437 0.87065 0.98954 1.44475 1.37722 1.16004 1.36683 1.20098 0.98898 1.34300 0.92530 0.95599 1.27520 0.92850 0.96954 1.09521 1.71017 1.45108 1.42803 1.01331 0.83204 0.74571 0.77395 0.71361 1.20203 1.23458 1.18632 1.21526 0.95481 0.92054 0.91552 1.22075 0.95315 0.98236 1.00603 1.21655 0.79727 1.00205 0.99044 0.88683 0.87306 0.88962 0.84653 0.84075 0.87276 0.88971 0.92506 0.87681 0.90900 0.90176 0.89844 0.94502 0.88770 0.93983 0.94387 0.94437 0.93946 0.93859 0.94577 0.91067 0.89844 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.76 113.37 1.22 0.23 16 2 S -0.28 -5.57 21.52 -56.49 -1.22 -6.79 16 3 C -0.10 -1.39 4.77 71.24 0.34 -1.05 16 4 C 0.52 11.85 7.72 87.66 0.68 12.52 16 5 O -0.57 -19.83 15.28 -3.02 -0.05 -19.88 16 6 N -0.60 -10.93 2.97 -818.97 -2.43 -13.36 16 7 C 0.10 0.82 6.34 86.36 0.55 1.36 16 8 C -0.13 -1.20 6.08 30.67 0.19 -1.01 16 9 C -0.12 -1.62 4.85 30.62 0.15 -1.47 16 10 C -0.08 -1.80 1.92 -10.73 -0.02 -1.82 16 11 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 12 C -0.06 -1.74 1.74 -10.77 -0.02 -1.76 16 13 C -0.11 -3.45 5.05 30.67 0.15 -3.30 16 14 C 0.14 5.43 6.51 86.36 0.56 6.00 16 15 N -0.62 -30.67 2.71 -698.27 -1.90 -32.57 16 16 C -0.33 -19.62 9.88 84.03 0.83 -18.79 16 17 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 18 C -0.07 -4.58 5.24 84.86 0.44 -4.13 16 19 N -0.96 -63.77 13.70 21.65 0.30 -63.48 16 20 Si 1.11 55.65 24.73 68.60 1.70 57.35 16 21 H -0.28 -12.93 6.56 99.48 0.65 -12.27 16 22 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 23 H -0.26 -11.96 6.80 99.48 0.68 -11.28 16 24 C 0.12 5.22 4.23 86.51 0.37 5.58 16 25 C -0.12 -4.42 5.07 30.82 0.16 -4.27 16 26 C 0.12 2.61 5.19 86.35 0.45 3.05 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.14 1.10 7.69 -2.39 -0.02 1.08 16 31 H 0.14 0.97 7.94 -2.39 -0.02 0.95 16 32 H 0.11 0.29 5.93 -2.38 -0.01 0.28 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.07 1.06 6.33 -2.39 -0.02 1.05 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.09 2.14 6.33 -2.39 -0.02 2.12 16 41 H 0.04 1.73 7.93 -2.39 -0.02 1.71 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.25 16.50 8.73 -92.71 -0.81 15.69 16 44 H 0.04 1.73 7.10 -2.38 -0.02 1.71 16 45 H 0.04 2.14 4.76 -2.39 -0.01 2.13 16 46 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.07 2.32 6.49 -2.39 -0.02 2.30 16 48 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.06 1.90 5.59 -2.39 -0.01 1.89 16 Total: -1.00 -83.38 375.47 3.24 -80.15 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.79 Total: 7.42 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 6.04 Total: -8.84 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.03 Total: -109.41 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.05 Total: -19.88 kcal Atomic # 14 Polarization: 55.65 SS G_CDS: 1.70 Total: 57.35 kcal Atomic # 16 Polarization: -5.57 SS G_CDS: -1.22 Total: -6.79 kcal Total: -83.38 3.24 -80.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047224184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.671 kcal (2) G-P(sol) polarization free energy of solvation -83.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds