Wall clock time and date at job start Tue Mar 31 2020 14:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81398 * 102.99802 * 2 1 4 4 C 1.50705 * 109.47301 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99609 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00205 * 180.02562 * 4 3 2 7 7 C 1.46923 * 120.63305 * 359.97406 * 6 4 3 8 8 C 1.53190 * 108.78071 * 233.63311 * 7 6 4 9 9 C 1.53040 * 109.31050 * 305.36839 * 8 7 6 10 10 C 1.53350 * 109.61265 * 61.36978 * 9 8 7 11 11 H 1.09003 * 109.47161 * 58.54731 * 10 9 8 12 12 C 1.52995 * 109.68504 * 178.74737 * 10 9 8 13 13 C 1.53041 * 109.46198 * 299.77943 * 12 10 9 14 14 C 1.53189 * 109.31205 * 178.60240 * 13 12 10 15 15 N 1.46931 * 108.76848 * 54.65393 * 14 13 12 16 16 C 1.36937 * 120.62975 * 126.35587 * 15 14 13 17 17 H 1.08000 * 119.99808 * 207.69688 * 16 15 14 18 18 C 1.38813 * 119.99781 * 27.70258 * 16 15 14 19 19 N 1.31617 * 120.00048 * 17.35797 * 18 16 15 20 20 Si 1.86798 * 119.99855 * 197.35486 * 18 16 15 21 21 H 1.48500 * 109.47179 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46952 * 119.99904 * 20 18 16 23 23 H 1.48495 * 109.47497 * 239.99971 * 20 18 16 24 24 C 1.46922 * 118.73689 * 306.38588 * 15 14 13 25 25 C 1.53049 * 109.45853 * 179.72448 * 12 10 9 26 26 C 1.46931 * 120.62849 * 179.97438 * 6 4 3 27 27 H 1.08995 * 109.47663 * 300.00100 * 1 2 3 28 28 H 1.09001 * 109.47034 * 60.00168 * 1 2 3 29 29 H 1.09010 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47464 * 59.99619 * 3 2 1 31 31 H 1.08995 * 109.47336 * 299.99542 * 3 2 1 32 32 H 1.09007 * 109.58271 * 353.42273 * 7 6 4 33 33 H 1.09005 * 109.58769 * 113.69780 * 7 6 4 34 34 H 1.09003 * 109.49424 * 65.31129 * 8 7 6 35 35 H 1.08991 * 109.50367 * 185.41251 * 8 7 6 36 36 H 1.08999 * 109.45925 * 181.38317 * 9 8 7 37 37 H 1.09009 * 109.45567 * 301.35248 * 9 8 7 38 38 H 1.08999 * 109.46173 * 59.75739 * 12 10 9 39 39 H 1.09004 * 109.49719 * 298.56519 * 13 12 10 40 40 H 1.08995 * 109.49674 * 58.66290 * 13 12 10 41 41 H 1.09002 * 109.59878 * 294.86976 * 14 13 12 42 42 H 1.09004 * 109.58478 * 174.43574 * 14 13 12 43 43 H 0.97005 * 119.99694 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.58697 * 293.81544 * 24 15 14 45 45 H 1.09001 * 109.58515 * 173.39277 * 24 15 14 46 46 H 1.09003 * 109.49314 * 301.33628 * 25 12 10 47 47 H 1.08996 * 109.49267 * 61.43319 * 25 12 10 48 48 H 1.08996 * 109.58177 * 246.15154 * 26 6 4 49 49 H 1.08995 * 109.58914 * 6.43916 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 6 3.7194 1.9375 0.0006 5 8 4.4403 0.9622 0.0015 6 7 4.2574 3.1731 0.0013 7 6 3.3971 4.3642 0.0008 8 6 3.8064 5.2677 -1.1666 9 6 5.3028 5.5732 -1.0696 10 6 6.1020 4.2680 -1.1658 11 1 5.8729 3.7703 -2.1081 12 6 7.5995 4.5745 -1.1003 13 6 7.9846 5.4873 -2.2668 14 6 9.4773 5.8202 -2.1780 15 7 10.2388 4.5652 -2.1173 16 6 11.2548 4.3220 -3.0027 17 1 11.5077 3.3063 -3.2687 18 6 11.9596 5.3811 -3.5581 19 7 11.9023 6.5731 -3.0029 20 14 12.9896 5.1146 -5.0935 21 1 12.8869 3.6953 -5.5183 22 1 12.4922 5.9937 -6.1820 23 1 14.4080 5.4428 -4.8013 24 6 9.8890 3.5757 -1.0891 25 6 8.3917 3.2681 -1.1899 26 6 5.7154 3.3548 0.0025 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8029 2.2372 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 2.3562 4.0630 -0.1177 33 1 3.5170 4.9019 0.9413 34 1 3.5990 4.7608 -2.1090 35 1 3.2414 6.1986 -1.1217 36 1 5.5918 6.2360 -1.8852 37 1 5.5134 6.0577 -0.1160 38 1 7.8272 5.0733 -0.1583 39 1 7.7804 4.9791 -3.2092 40 1 7.4031 6.4077 -2.2158 41 1 9.6682 6.4072 -1.2796 42 1 9.7780 6.3879 -3.0587 43 1 12.3945 7.3132 -3.3913 44 1 10.1135 3.9796 -0.1019 45 1 10.4614 2.6623 -1.2512 46 1 8.0999 2.6089 -0.3722 47 1 8.1836 2.7811 -2.1425 48 1 6.0258 3.8118 0.9420 49 1 6.2043 2.3874 -0.1125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047224185.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:46 Heat of formation + Delta-G solvation = -25.570733 kcal Electronic energy + Delta-G solvation = -26483.716533 eV Core-core repulsion = 22957.935934 eV Total energy + Delta-G solvation = -3525.780599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.46509 -38.45531 -36.81466 -34.21483 -32.54574 -31.57290 -30.68757 -29.83360 -29.22073 -28.66844 -25.51136 -25.14021 -23.27813 -22.12169 -21.39956 -20.19855 -19.39697 -18.95795 -17.52792 -16.83913 -16.66281 -15.98296 -15.60541 -14.88276 -14.58457 -14.55636 -14.18585 -14.14392 -13.93350 -13.66091 -13.59718 -13.43392 -13.27993 -13.02136 -12.84372 -12.65219 -12.61492 -12.25030 -12.03069 -11.57458 -11.37134 -11.21681 -10.96506 -10.83693 -10.68035 -10.54487 -10.31117 -10.27534 -10.16601 -10.08378 -9.98777 -9.82076 -9.36510 -9.30074 -8.76810 -8.42077 -7.98057 -6.60837 -5.74190 -3.15316 1.11957 2.18815 2.36061 2.79039 3.39603 3.47568 3.50406 4.10728 4.47145 4.54058 4.55538 4.71001 4.72665 4.74500 4.75190 4.77946 4.93817 5.10016 5.17811 5.30091 5.38184 5.40035 5.47324 5.56000 5.58704 5.68968 5.76736 5.85347 5.90650 5.99075 6.06881 6.12882 6.25608 6.31150 6.41646 6.44353 6.62043 6.71153 6.78070 6.88534 6.94237 7.08473 7.14050 7.44088 7.71165 7.84804 7.91766 8.50463 9.27065 9.91087 10.47913 11.34217 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002492 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.754701 B =11231.240280 C =11830.706640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.185 6.185 3 C -0.126 4.126 4 C 0.529 3.471 5 O -0.517 6.517 6 N -0.607 5.607 7 C 0.106 3.894 8 C -0.135 4.135 9 C -0.118 4.118 10 C -0.094 4.094 11 H 0.071 0.929 12 C -0.069 4.069 13 C -0.134 4.134 14 C 0.171 3.829 15 N -0.593 5.593 16 C -0.247 4.247 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.904 5.904 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.145 3.855 25 C -0.130 4.130 26 C 0.116 3.884 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.015 0.985 42 H 0.086 0.914 43 H 0.252 0.748 44 H 0.016 0.984 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.380 -3.610 7.457 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.040 5.960 3 C -0.277 4.277 4 C 0.315 3.685 5 O -0.393 6.393 6 N -0.341 5.341 7 C -0.018 4.018 8 C -0.173 4.173 9 C -0.155 4.155 10 C -0.114 4.114 11 H 0.089 0.911 12 C -0.088 4.088 13 C -0.173 4.173 14 C 0.045 3.955 15 N -0.316 5.316 16 C -0.377 4.377 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.549 5.549 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.019 3.981 25 C -0.169 4.169 26 C -0.006 4.006 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.033 0.967 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.219 -4.878 7.412 25.793 hybrid contribution -0.458 1.243 -0.800 1.548 sum -24.677 -3.635 6.612 25.805 Atomic orbital electron populations 1.23538 0.96008 1.06780 1.04793 1.87642 1.04352 1.06036 1.97979 1.23568 0.98101 0.99272 1.06766 1.19610 0.88755 0.83233 0.76897 1.90766 1.61845 1.37957 1.48708 1.48072 1.07835 1.05003 1.73199 1.21803 0.93910 0.86487 0.99562 1.21931 0.97719 0.99389 0.98277 1.21698 0.93267 0.97779 1.02780 1.21664 0.96282 0.95222 0.98202 0.91066 1.21008 0.91169 0.97083 0.99542 1.22257 1.00448 0.97566 0.97024 1.20769 0.85676 0.88044 1.01015 1.44074 1.36630 1.16913 1.33970 1.19245 1.08728 0.92548 1.17172 0.91735 1.25020 0.98175 0.96558 1.00138 1.70051 1.44725 1.00961 1.39173 0.86249 0.79724 0.77628 0.83375 1.20278 1.21633 1.21792 1.20894 0.92093 0.93314 0.91795 1.22112 0.98119 0.95984 1.00695 1.21857 0.78106 1.01949 0.98655 0.90548 0.90521 0.87728 0.87367 0.87304 0.90310 0.90981 0.91508 0.90690 0.90734 0.91780 0.91865 0.92890 0.93243 0.96660 0.89621 0.93811 0.96652 0.92989 0.93093 0.92420 0.91412 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 10.76 101.05 1.09 0.29 16 2 S -0.18 -1.89 21.52 -107.50 -2.31 -4.20 16 3 C -0.13 -1.06 4.77 36.01 0.17 -0.89 16 4 C 0.53 6.50 7.72 -10.99 -0.08 6.41 16 5 O -0.52 -8.65 15.28 5.56 0.08 -8.56 16 6 N -0.61 -6.55 2.97 -172.74 -0.51 -7.06 16 7 C 0.11 0.77 6.34 -3.71 -0.02 0.74 16 8 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 9 C -0.12 -1.24 4.87 -26.53 -0.13 -1.37 16 10 C -0.09 -1.22 1.94 -90.32 -0.17 -1.39 16 11 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 12 C -0.07 -1.10 1.74 -90.58 -0.16 -1.26 16 13 C -0.13 -2.47 5.05 -26.61 -0.13 -2.60 16 14 C 0.17 4.06 5.31 -3.71 -0.02 4.04 16 15 N -0.59 -15.09 2.99 -172.32 -0.52 -15.61 16 16 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 17 H 0.06 1.79 7.89 -52.49 -0.41 1.38 16 18 C 0.00 -0.02 4.91 -17.43 -0.09 -0.11 16 19 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 20 Si 0.90 22.04 29.59 -169.99 -5.03 17.01 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 25 C -0.13 -2.31 5.05 -26.61 -0.13 -2.44 16 26 C 0.12 1.45 5.18 -3.68 -0.02 1.43 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.11 0.65 7.94 -51.92 -0.41 0.23 16 31 H 0.11 0.69 7.69 -51.93 -0.40 0.29 16 32 H 0.08 0.38 5.93 -51.93 -0.31 0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 37 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.81 6.35 -51.93 -0.33 0.48 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 2.30 6.04 -51.93 -0.31 1.98 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.12 7.93 -51.93 -0.41 0.70 16 46 H 0.05 0.81 6.49 -51.93 -0.34 0.47 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.10 1.44 5.58 -51.93 -0.29 1.15 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -32.88 381.19 -10.56 -43.44 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -8.60 Total: -2.54 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.04 Total: -2.32 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.41 Total: -48.56 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -2.31 Total: -4.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.88 -10.56 -43.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047224185.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.866 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds