Wall clock time and date at job start Tue Mar 31 2020 14:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81398 * 102.99802 * 2 1 4 4 C 1.50705 * 109.47301 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99609 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00205 * 180.02562 * 4 3 2 7 7 C 1.46923 * 120.63305 * 359.97406 * 6 4 3 8 8 C 1.53190 * 108.78071 * 233.63311 * 7 6 4 9 9 C 1.53040 * 109.31050 * 305.36839 * 8 7 6 10 10 C 1.53350 * 109.61265 * 61.36978 * 9 8 7 11 11 H 1.09003 * 109.47161 * 58.54731 * 10 9 8 12 12 C 1.52995 * 109.68504 * 178.74737 * 10 9 8 13 13 C 1.53041 * 109.46198 * 299.77943 * 12 10 9 14 14 C 1.53189 * 109.31205 * 178.60240 * 13 12 10 15 15 N 1.46931 * 108.76848 * 54.65393 * 14 13 12 16 16 C 1.36937 * 120.62975 * 126.35587 * 15 14 13 17 17 H 1.08000 * 119.99808 * 207.69688 * 16 15 14 18 18 C 1.38813 * 119.99781 * 27.70258 * 16 15 14 19 19 N 1.31617 * 120.00048 * 17.35797 * 18 16 15 20 20 Si 1.86798 * 119.99855 * 197.35486 * 18 16 15 21 21 H 1.48500 * 109.47179 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46952 * 119.99904 * 20 18 16 23 23 H 1.48495 * 109.47497 * 239.99971 * 20 18 16 24 24 C 1.46922 * 118.73689 * 306.38588 * 15 14 13 25 25 C 1.53049 * 109.45853 * 179.72448 * 12 10 9 26 26 C 1.46931 * 120.62849 * 179.97438 * 6 4 3 27 27 H 1.08995 * 109.47663 * 300.00100 * 1 2 3 28 28 H 1.09001 * 109.47034 * 60.00168 * 1 2 3 29 29 H 1.09010 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47464 * 59.99619 * 3 2 1 31 31 H 1.08995 * 109.47336 * 299.99542 * 3 2 1 32 32 H 1.09007 * 109.58271 * 353.42273 * 7 6 4 33 33 H 1.09005 * 109.58769 * 113.69780 * 7 6 4 34 34 H 1.09003 * 109.49424 * 65.31129 * 8 7 6 35 35 H 1.08991 * 109.50367 * 185.41251 * 8 7 6 36 36 H 1.08999 * 109.45925 * 181.38317 * 9 8 7 37 37 H 1.09009 * 109.45567 * 301.35248 * 9 8 7 38 38 H 1.08999 * 109.46173 * 59.75739 * 12 10 9 39 39 H 1.09004 * 109.49719 * 298.56519 * 13 12 10 40 40 H 1.08995 * 109.49674 * 58.66290 * 13 12 10 41 41 H 1.09002 * 109.59878 * 294.86976 * 14 13 12 42 42 H 1.09004 * 109.58478 * 174.43574 * 14 13 12 43 43 H 0.97005 * 119.99694 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.58697 * 293.81544 * 24 15 14 45 45 H 1.09001 * 109.58515 * 173.39277 * 24 15 14 46 46 H 1.09003 * 109.49314 * 301.33628 * 25 12 10 47 47 H 1.08996 * 109.49267 * 61.43319 * 25 12 10 48 48 H 1.08996 * 109.58177 * 246.15154 * 26 6 4 49 49 H 1.08995 * 109.58914 * 6.43916 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 6 3.7194 1.9375 0.0006 5 8 4.4403 0.9622 0.0015 6 7 4.2574 3.1731 0.0013 7 6 3.3971 4.3642 0.0008 8 6 3.8064 5.2677 -1.1666 9 6 5.3028 5.5732 -1.0696 10 6 6.1020 4.2680 -1.1658 11 1 5.8729 3.7703 -2.1081 12 6 7.5995 4.5745 -1.1003 13 6 7.9846 5.4873 -2.2668 14 6 9.4773 5.8202 -2.1780 15 7 10.2388 4.5652 -2.1173 16 6 11.2548 4.3220 -3.0027 17 1 11.5077 3.3063 -3.2687 18 6 11.9596 5.3811 -3.5581 19 7 11.9023 6.5731 -3.0029 20 14 12.9896 5.1146 -5.0935 21 1 12.8869 3.6953 -5.5183 22 1 12.4922 5.9937 -6.1820 23 1 14.4080 5.4428 -4.8013 24 6 9.8890 3.5757 -1.0891 25 6 8.3917 3.2681 -1.1899 26 6 5.7154 3.3548 0.0025 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8029 2.2372 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 2.3562 4.0630 -0.1177 33 1 3.5170 4.9019 0.9413 34 1 3.5990 4.7608 -2.1090 35 1 3.2414 6.1986 -1.1217 36 1 5.5918 6.2360 -1.8852 37 1 5.5134 6.0577 -0.1160 38 1 7.8272 5.0733 -0.1583 39 1 7.7804 4.9791 -3.2092 40 1 7.4031 6.4077 -2.2158 41 1 9.6682 6.4072 -1.2796 42 1 9.7780 6.3879 -3.0587 43 1 12.3945 7.3132 -3.3913 44 1 10.1135 3.9796 -0.1019 45 1 10.4614 2.6623 -1.2512 46 1 8.0999 2.6089 -0.3722 47 1 8.1836 2.7811 -2.1425 48 1 6.0258 3.8118 0.9420 49 1 6.2043 2.3874 -0.1125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047224185.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:45 Heat of formation + Delta-G solvation = -44.621705 kcal Electronic energy + Delta-G solvation = -26484.542645 eV Core-core repulsion = 22957.935934 eV Total energy + Delta-G solvation = -3526.606711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38746 -39.76419 -38.09052 -35.70100 -33.87053 -32.78988 -31.96906 -31.29391 -30.17045 -29.49382 -26.98528 -26.29928 -24.62697 -23.64438 -22.68023 -21.41427 -20.71729 -20.08587 -18.70230 -18.32672 -17.60464 -16.89096 -16.76474 -16.44975 -15.74279 -15.58830 -15.36351 -15.31658 -15.03516 -14.71148 -14.57544 -14.56626 -14.39848 -14.13542 -14.00658 -13.77827 -13.56444 -13.35828 -13.16122 -13.03246 -12.86667 -12.66559 -12.59387 -12.16043 -12.00731 -11.92513 -11.87529 -11.75476 -11.56598 -11.42050 -11.12705 -10.93090 -10.82903 -10.76722 -10.54799 -9.66408 -8.71243 -8.68016 -7.88528 -5.33182 0.50288 1.43446 1.45063 1.49735 1.56178 1.65120 1.98912 2.49669 3.24867 3.39332 3.68206 3.72491 3.80412 3.90574 4.02897 4.10253 4.15745 4.19844 4.25895 4.37601 4.39659 4.40190 4.42509 4.55141 4.61238 4.64863 4.72064 4.78945 4.84420 4.90569 4.91669 4.93880 5.01826 5.06196 5.11070 5.16414 5.28620 5.33573 5.40310 5.44062 5.49424 5.53395 5.56991 5.66742 5.80546 6.32731 6.38594 7.06004 7.14620 7.86539 8.37722 9.17476 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002492 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.754701 B =11231.240280 C =11830.706640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.279 6.279 3 C -0.104 4.104 4 C 0.519 3.481 5 O -0.573 6.573 6 N -0.604 5.604 7 C 0.100 3.900 8 C -0.129 4.129 9 C -0.118 4.118 10 C -0.081 4.081 11 H 0.055 0.945 12 C -0.061 4.061 13 C -0.118 4.118 14 C 0.176 3.824 15 N -0.612 5.612 16 C -0.262 4.262 17 H 0.060 0.940 18 C -0.051 4.051 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.290 1.290 24 C 0.141 3.859 25 C -0.118 4.118 26 C 0.119 3.881 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.076 0.924 41 H -0.003 1.003 42 H 0.051 0.949 43 H 0.250 0.750 44 H 0.015 0.985 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.043 0.957 48 H 0.078 0.922 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.812 -2.737 7.913 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.055 6.055 3 C -0.254 4.254 4 C 0.307 3.693 5 O -0.453 6.453 6 N -0.337 5.337 7 C -0.021 4.021 8 C -0.167 4.167 9 C -0.155 4.155 10 C -0.100 4.100 11 H 0.073 0.927 12 C -0.080 4.080 13 C -0.157 4.157 14 C 0.050 3.950 15 N -0.336 5.336 16 C -0.393 4.393 17 H 0.078 0.922 18 C -0.247 4.247 19 N -0.580 5.580 20 Si 0.794 3.206 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.217 1.217 24 C 0.015 3.985 25 C -0.157 4.157 26 C -0.003 4.003 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.015 0.985 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.694 -3.990 7.878 29.068 hybrid contribution 0.620 0.970 -0.895 1.458 sum -27.074 -3.021 6.984 28.123 Atomic orbital electron populations 1.23539 0.91092 1.07659 1.06395 1.88004 1.09842 1.09387 1.98272 1.23496 0.95034 0.97415 1.09463 1.20328 0.90353 0.82795 0.75805 1.90745 1.63456 1.39847 1.51242 1.48161 1.07326 1.05949 1.72220 1.22141 0.94855 0.84995 1.00130 1.21908 0.95730 1.00796 0.98272 1.21698 0.94986 0.95815 1.03000 1.21452 0.94059 0.96841 0.97667 0.92697 1.20908 0.93374 0.95327 0.98430 1.22041 0.96801 0.99264 0.97577 1.20627 0.88827 0.87110 0.98423 1.44356 1.36638 1.17920 1.34705 1.19516 1.09346 0.92521 1.17897 0.92210 1.25769 0.99692 0.96362 1.02848 1.70192 1.45750 1.01592 1.40422 0.85232 0.77898 0.77752 0.79731 1.19488 1.21355 1.21716 1.21037 0.94594 0.92121 0.90718 1.21955 0.95569 0.97396 1.00736 1.21632 0.79723 1.00256 0.98729 0.88753 0.88979 0.87257 0.84170 0.84623 0.87034 0.89228 0.92155 0.87869 0.91462 0.90836 0.91455 0.94064 0.90580 0.98512 0.93075 0.94058 0.96696 0.93661 0.91044 0.93828 0.90393 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.76 113.37 1.22 0.23 16 2 S -0.28 -5.42 21.52 -56.49 -1.22 -6.64 16 3 C -0.10 -1.42 4.77 71.24 0.34 -1.08 16 4 C 0.52 11.97 7.72 87.66 0.68 12.64 16 5 O -0.57 -19.52 15.28 -3.03 -0.05 -19.57 16 6 N -0.60 -11.53 2.97 -818.81 -2.43 -13.96 16 7 C 0.10 0.99 6.34 86.36 0.55 1.54 16 8 C -0.13 -1.49 6.08 30.67 0.19 -1.31 16 9 C -0.12 -2.12 4.87 30.73 0.15 -1.97 16 10 C -0.08 -1.97 1.94 -10.60 -0.02 -1.99 16 11 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 12 C -0.06 -1.92 1.74 -10.77 -0.02 -1.94 16 13 C -0.12 -4.35 5.05 30.67 0.16 -4.20 16 14 C 0.18 8.62 5.31 86.36 0.46 9.08 16 15 N -0.61 -32.20 2.99 -699.09 -2.09 -34.29 16 16 C -0.26 -15.13 9.58 84.03 0.81 -14.32 16 17 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 18 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 19 N -0.93 -56.32 11.19 21.65 0.24 -56.08 16 20 Si 0.97 46.24 29.59 68.60 2.03 48.27 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 24 C 0.14 6.22 6.52 86.36 0.56 6.78 16 25 C -0.12 -4.22 5.05 30.68 0.15 -4.07 16 26 C 0.12 2.84 5.18 86.38 0.45 3.28 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.14 1.02 7.94 -2.39 -0.02 1.00 16 31 H 0.14 1.13 7.69 -2.39 -0.02 1.11 16 32 H 0.11 0.42 5.93 -2.38 -0.01 0.41 16 33 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 1.33 6.36 -2.39 -0.02 1.31 16 37 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 2.40 6.35 -2.39 -0.02 2.38 16 41 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 42 H 0.05 2.85 6.04 -2.38 -0.01 2.83 16 43 H 0.25 14.51 8.31 -92.70 -0.77 13.73 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.65 16 45 H 0.04 2.01 7.93 -2.39 -0.02 1.99 16 46 H 0.07 2.28 6.49 -2.39 -0.02 2.27 16 47 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.07 2.05 5.58 -2.39 -0.01 2.04 16 Total: -1.00 -76.76 381.19 3.47 -73.29 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.91 Total: 8.86 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 6.08 Total: 0.12 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -4.29 Total: -104.33 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -1.22 Total: -6.64 kcal Total: -76.76 3.47 -73.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047224185.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.665 kcal (2) G-P(sol) polarization free energy of solvation -76.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds