Wall clock time and date at job start Tue Mar 31 2020 14:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81396 * 103.00132 * 2 1 4 4 C 1.50698 * 109.47259 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99954 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00406 * 180.02562 * 4 3 2 7 7 C 1.46931 * 120.62474 * 0.02562 * 6 4 3 8 8 C 1.53194 * 108.77423 * 126.41541 * 7 6 4 9 9 C 1.53039 * 109.31158 * 54.63424 * 8 7 6 10 10 C 1.53047 * 109.53773 * 298.63085 * 9 8 7 11 11 H 1.09005 * 109.52497 * 301.40240 * 10 9 8 12 12 C 1.52995 * 109.49701 * 181.32035 * 10 9 8 13 13 H 1.09004 * 109.50122 * 300.22556 * 12 10 9 14 14 C 1.53039 * 109.49719 * 180.16530 * 12 10 9 15 15 C 1.53045 * 109.54050 * 178.68269 * 14 12 10 16 16 C 1.53189 * 109.30901 * 61.36474 * 15 14 12 17 17 N 1.46928 * 108.77625 * 305.36486 * 16 15 14 18 18 C 1.36943 * 120.63136 * 233.61137 * 17 16 15 19 19 H 1.07999 * 119.99998 * 151.84492 * 18 17 16 20 20 C 1.38807 * 119.99906 * 331.84830 * 18 17 16 21 21 N 1.31622 * 119.99975 * 343.06158 * 20 18 17 22 22 Si 1.86798 * 120.00277 * 163.06545 * 20 18 17 23 23 H 1.48510 * 109.47018 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47673 * 119.99603 * 22 20 18 25 25 H 1.48500 * 109.47294 * 239.99989 * 22 20 18 26 26 C 1.46921 * 118.73830 * 53.61254 * 17 16 15 27 27 C 1.46923 * 120.63494 * 180.02562 * 6 4 3 28 28 H 1.09004 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47132 * 299.99557 * 1 2 3 30 30 H 1.08991 * 109.47271 * 59.99848 * 1 2 3 31 31 H 1.09003 * 109.47337 * 60.00113 * 3 2 1 32 32 H 1.09003 * 109.47250 * 300.00182 * 3 2 1 33 33 H 1.09000 * 109.58378 * 246.20058 * 7 6 4 34 34 H 1.08995 * 109.59110 * 6.62426 * 7 6 4 35 35 H 1.08998 * 109.49520 * 174.58649 * 8 7 6 36 36 H 1.08996 * 109.49447 * 294.67902 * 8 7 6 37 37 H 1.09005 * 109.45780 * 178.61817 * 9 8 7 38 38 H 1.08999 * 109.45183 * 58.64753 * 9 8 7 39 39 H 1.09000 * 109.46166 * 298.70511 * 14 12 10 40 40 H 1.09002 * 109.46021 * 58.67628 * 14 12 10 41 41 H 1.08997 * 109.49923 * 181.31351 * 15 14 12 42 42 H 1.08997 * 109.49304 * 301.38151 * 15 14 12 43 43 H 1.08991 * 109.59338 * 65.15536 * 16 15 14 44 44 H 1.09008 * 109.58486 * 185.43876 * 16 15 14 45 45 H 0.97005 * 119.99710 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58660 * 186.60672 * 26 17 16 47 47 H 1.09000 * 109.58818 * 66.17956 * 26 17 16 48 48 H 1.09000 * 109.58282 * 353.37283 * 27 6 4 49 49 H 1.08993 * 109.58689 * 113.79847 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7194 1.9373 0.0006 5 8 4.4404 0.9620 0.0015 6 7 4.2576 3.1730 0.0013 7 6 3.3972 4.3641 0.0019 8 6 3.8065 5.2673 1.1696 9 6 5.3029 5.5729 1.0727 10 6 6.0988 4.2692 1.1685 11 1 5.8702 3.7712 2.1109 12 6 7.5958 4.5789 1.1046 13 1 7.8240 5.0788 0.1633 14 6 8.3915 3.2748 1.1963 15 6 9.8880 3.5805 1.0995 16 6 10.2980 4.4804 2.2694 17 7 9.4378 5.6716 2.2738 18 6 9.9846 6.9271 2.2772 19 1 9.4438 7.7528 1.8388 20 6 11.2340 7.1384 2.8439 21 7 11.7468 6.2417 3.6596 22 14 12.1876 8.6953 2.4489 23 1 11.3980 9.5353 1.5127 24 1 12.4400 9.4525 3.7012 25 1 13.4830 8.3358 1.8182 26 6 7.9798 5.4901 2.2746 27 6 5.7155 3.3547 0.0013 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8032 2.2371 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 3.5192 4.9034 -0.9374 34 1 2.3564 4.0630 0.1202 35 1 3.2414 6.1983 1.1248 36 1 3.5990 4.7602 2.1118 37 1 5.5918 6.2355 1.8886 38 1 5.5134 6.0576 0.1193 39 1 8.1813 2.7873 2.1483 40 1 8.1023 2.6146 0.3786 41 1 10.4530 2.6493 1.1414 42 1 10.0950 4.0896 0.1582 43 1 10.1765 3.9386 3.2073 44 1 11.3396 4.7797 2.1526 45 1 12.6198 6.3896 4.0559 46 1 7.4911 6.4576 2.1598 47 1 7.6693 5.0305 3.2129 48 1 6.2042 2.3875 0.1193 49 1 6.0269 3.8115 -0.9380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053004855.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:52 Heat of formation + Delta-G solvation = -45.212315 kcal Electronic energy + Delta-G solvation = -26560.911737 eV Core-core repulsion = 23034.279415 eV Total energy + Delta-G solvation = -3526.632322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38983 -39.76648 -38.08002 -35.57842 -34.05383 -32.79011 -32.21042 -31.47335 -29.73747 -29.16188 -27.35930 -26.14771 -24.75082 -23.65827 -22.71519 -21.40313 -20.66938 -20.04324 -18.71075 -18.27207 -17.60514 -16.89325 -16.74635 -16.51201 -15.77917 -15.75352 -15.32133 -15.15929 -14.92776 -14.76219 -14.59337 -14.51189 -14.41987 -14.10177 -14.00535 -13.84534 -13.60865 -13.33904 -13.20750 -12.98917 -12.96068 -12.69783 -12.43652 -12.23980 -11.96532 -11.91050 -11.82297 -11.71313 -11.60765 -11.46361 -11.13906 -10.94545 -10.83610 -10.76793 -10.54691 -9.67165 -8.70504 -8.67225 -7.86768 -5.33055 0.50844 1.45391 1.47226 1.50089 1.57886 1.65617 1.99052 2.50936 3.27435 3.39493 3.60678 3.76707 3.86819 3.92056 4.04216 4.10617 4.14721 4.20240 4.24301 4.32761 4.39586 4.40136 4.40447 4.51737 4.61378 4.65075 4.74216 4.80833 4.87219 4.89505 4.91665 4.94486 5.00649 5.03938 5.08008 5.16456 5.25446 5.33261 5.39086 5.42527 5.51910 5.52012 5.58667 5.66742 5.76418 6.33114 6.39270 7.06076 7.14469 7.86452 8.39357 9.19690 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.002503 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.422054 B =11182.798037 C =11820.465772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.278 6.278 3 C -0.104 4.104 4 C 0.520 3.480 5 O -0.573 6.573 6 N -0.604 5.604 7 C 0.101 3.899 8 C -0.129 4.129 9 C -0.118 4.118 10 C -0.080 4.080 11 H 0.056 0.944 12 C -0.081 4.081 13 H 0.067 0.933 14 C -0.101 4.101 15 C -0.131 4.131 16 C 0.176 3.824 17 N -0.611 5.611 18 C -0.258 4.258 19 H 0.070 0.930 20 C -0.056 4.056 21 N -0.938 5.938 22 Si 0.968 3.032 23 H -0.263 1.263 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.156 3.844 27 C 0.122 3.878 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.053 0.947 43 H -0.011 1.011 44 H 0.051 0.949 45 H 0.249 0.751 46 H 0.059 0.941 47 H 0.001 0.999 48 H 0.071 0.929 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.375 -4.951 -10.130 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.054 6.054 3 C -0.255 4.255 4 C 0.308 3.692 5 O -0.452 6.452 6 N -0.337 5.337 7 C -0.020 4.020 8 C -0.167 4.167 9 C -0.155 4.155 10 C -0.099 4.099 11 H 0.075 0.925 12 C -0.102 4.102 13 H 0.086 0.914 14 C -0.138 4.138 15 C -0.170 4.170 16 C 0.050 3.950 17 N -0.334 5.334 18 C -0.388 4.388 19 H 0.087 0.913 20 C -0.251 4.251 21 N -0.584 5.584 22 Si 0.796 3.204 23 H -0.187 1.187 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.030 3.970 27 C -0.001 4.001 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.007 0.993 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.019 0.981 48 H 0.089 0.911 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.209 -6.291 -10.055 27.860 hybrid contribution 0.583 1.562 0.492 1.738 sum -24.626 -4.730 -9.563 26.838 Atomic orbital electron populations 1.23539 0.91131 1.07659 1.06383 1.87978 1.09801 1.09332 1.98272 1.23500 0.95045 0.97457 1.09475 1.20315 0.90345 0.82751 0.75773 1.90740 1.63440 1.39797 1.51266 1.48164 1.07311 1.05963 1.72217 1.22133 0.94893 0.84966 1.00024 1.21909 0.95541 1.00824 0.98408 1.21623 0.95220 0.95882 1.02783 1.21338 0.93892 0.96792 0.97922 0.92506 1.21450 0.93434 0.95946 0.99344 0.91414 1.21456 0.94571 0.97003 1.00792 1.22017 0.96828 0.98958 0.99233 1.20571 0.95205 0.86274 0.92946 1.44338 1.00980 1.02140 1.85927 1.19558 1.01710 0.87393 1.30113 0.91272 1.25855 1.01122 1.00953 0.97152 1.70218 1.18210 1.37892 1.32129 0.85199 0.78415 0.79453 0.77343 1.18725 1.21978 1.21858 1.21037 0.83935 0.97493 0.94506 1.21588 0.79749 1.00169 0.98548 0.87240 0.89003 0.88773 0.84632 0.84171 0.89262 0.86900 0.87990 0.92057 0.92035 0.90973 0.93827 0.91307 0.91947 0.92817 0.99297 0.93034 0.94222 0.92211 0.98073 0.91068 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.76 113.37 1.22 0.23 16 2 S -0.28 -5.36 21.52 -56.49 -1.22 -6.58 16 3 C -0.10 -1.44 4.77 71.24 0.34 -1.10 16 4 C 0.52 11.97 7.72 87.66 0.68 12.65 16 5 O -0.57 -19.31 15.28 -3.04 -0.05 -19.35 16 6 N -0.60 -11.72 2.97 -818.98 -2.43 -14.15 16 7 C 0.10 1.07 6.34 86.36 0.55 1.62 16 8 C -0.13 -1.67 6.08 30.67 0.19 -1.49 16 9 C -0.12 -2.38 4.86 30.62 0.15 -2.23 16 10 C -0.08 -2.04 1.92 -10.73 -0.02 -2.06 16 11 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 12 C -0.08 -2.67 1.92 -10.72 -0.02 -2.69 16 13 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 14 C -0.10 -3.50 4.85 30.62 0.15 -3.35 16 15 C -0.13 -5.25 6.08 30.67 0.19 -5.06 16 16 C 0.18 8.93 5.30 86.36 0.46 9.39 16 17 N -0.61 -31.39 2.99 -699.11 -2.09 -33.49 16 18 C -0.26 -14.30 9.58 84.03 0.81 -13.49 16 19 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 20 C -0.06 -3.18 4.92 84.86 0.42 -2.76 16 21 N -0.94 -56.99 11.19 21.65 0.24 -56.75 16 22 Si 0.97 45.31 29.59 68.60 2.03 47.34 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 C 0.16 6.44 5.28 86.36 0.46 6.90 16 27 C 0.12 2.94 5.19 86.35 0.45 3.39 16 28 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.14 1.15 7.69 -2.39 -0.02 1.13 16 32 H 0.14 1.03 7.95 -2.39 -0.02 1.02 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.48 5.93 -2.39 -0.01 0.47 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 1.43 6.50 -2.38 -0.02 1.41 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 2.12 6.49 -2.39 -0.02 2.11 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 44 H 0.05 2.94 6.07 -2.38 -0.01 2.93 16 45 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 46 H 0.06 2.36 6.52 -2.39 -0.02 2.35 16 47 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.07 2.10 5.59 -2.39 -0.01 2.09 16 49 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -75.74 381.51 3.39 -72.35 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.91 Total: 10.67 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 6.00 Total: -0.04 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -4.28 Total: -104.38 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.22 Total: -6.58 kcal Total: -75.74 3.39 -72.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053004855.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.137 kcal (2) G-P(sol) polarization free energy of solvation -75.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds