Wall clock time and date at job start Tue Mar 31 2020 14:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00178 * 2 1 4 4 C 1.50700 * 109.47371 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99918 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00243 * 180.02562 * 4 3 2 7 7 C 1.46968 * 120.65000 * 2.40665 * 6 4 3 8 8 C 1.53194 * 108.88453 * 126.46671 * 7 6 4 9 9 C 1.53038 * 109.31180 * 54.55698 * 8 7 6 10 10 C 1.53037 * 109.53968 * 298.63142 * 9 8 7 11 11 C 1.46919 * 120.63179 * 182.22698 * 6 4 3 12 12 H 1.09003 * 109.59007 * 113.67828 * 11 6 4 13 13 C 1.52997 * 109.58739 * 353.39608 * 11 6 4 14 14 H 1.08995 * 109.50265 * 51.96954 * 13 11 6 15 15 C 1.53038 * 109.49708 * 172.03637 * 13 11 6 16 16 C 1.53045 * 109.53693 * 181.34820 * 15 13 11 17 17 C 1.53200 * 109.31012 * 298.63266 * 16 15 13 18 18 N 1.46923 * 108.77581 * 54.63809 * 17 16 15 19 19 C 1.36931 * 120.63415 * 126.40832 * 18 17 16 20 20 H 1.07994 * 120.00663 * 215.51402 * 19 18 17 21 21 C 1.38818 * 119.99764 * 35.51521 * 19 18 17 22 22 N 1.31616 * 119.99868 * 356.07221 * 21 19 18 23 23 Si 1.86798 * 120.00067 * 176.07028 * 21 19 18 24 24 H 1.48502 * 109.46817 * 89.99899 * 23 21 19 25 25 H 1.48500 * 109.47150 * 210.00116 * 23 21 19 26 26 H 1.48505 * 109.47332 * 330.00192 * 23 21 19 27 27 C 1.46998 * 118.75358 * 306.38794 * 18 17 16 28 28 H 1.08997 * 109.47313 * 60.00195 * 1 2 3 29 29 H 1.08997 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47046 * 299.99642 * 1 2 3 31 31 H 1.09003 * 109.46576 * 60.00203 * 3 2 1 32 32 H 1.08996 * 109.47390 * 300.00518 * 3 2 1 33 33 H 1.09000 * 109.59461 * 6.60483 * 7 6 4 34 34 H 1.08997 * 109.58029 * 246.31936 * 7 6 4 35 35 H 1.09000 * 109.50013 * 294.60257 * 8 7 6 36 36 H 1.09000 * 109.52114 * 174.52323 * 8 7 6 37 37 H 1.09006 * 109.45666 * 178.61583 * 9 8 7 38 38 H 1.08993 * 109.46319 * 58.65346 * 9 8 7 39 39 H 1.09008 * 109.50190 * 301.41440 * 10 9 8 40 40 H 1.08997 * 109.52847 * 181.33796 * 10 9 8 41 41 H 1.08997 * 109.46397 * 301.36727 * 15 13 11 42 42 H 1.09004 * 109.46294 * 61.33313 * 15 13 11 43 43 H 1.08993 * 109.49732 * 58.58273 * 16 15 13 44 44 H 1.09003 * 109.50005 * 178.68597 * 16 15 13 45 45 H 1.09004 * 109.58316 * 174.42259 * 17 16 15 46 46 H 1.09001 * 109.58813 * 294.70385 * 17 16 15 47 47 H 0.97005 * 119.99740 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.58529 * 293.82979 * 27 18 17 49 49 H 1.09000 * 109.62783 * 173.37549 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 8 4.4404 0.9621 0.0006 6 7 4.2576 3.1730 0.0013 7 6 3.3985 4.3643 0.0544 8 6 3.8513 5.2506 1.2190 9 6 5.3432 5.5576 1.0711 10 6 6.1414 4.2527 1.1185 11 6 5.7146 3.3550 -0.0472 12 1 5.9931 3.8244 -0.9908 13 6 6.4057 1.9953 0.0727 14 1 5.9886 1.3089 -0.6641 15 6 7.9065 2.1614 -0.1760 16 6 8.5938 0.7967 -0.0894 17 6 8.3976 0.2189 1.3158 18 7 6.9603 0.1910 1.6192 19 6 6.3551 -0.9685 2.0246 20 1 5.3434 -1.1861 1.7160 21 6 7.0422 -1.8643 2.8324 22 7 8.3004 -1.6371 3.1450 23 14 6.1812 -3.3921 3.4756 24 1 6.3632 -4.5061 2.5107 25 1 6.7636 -3.7733 4.7874 26 1 4.7322 -3.1115 3.6401 27 6 6.1840 1.4315 1.4798 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8032 2.2370 0.8901 32 1 1.8031 2.2371 -0.8899 33 1 2.3626 4.0614 0.2070 34 1 3.4834 4.9179 -0.8806 35 1 3.6786 4.7300 2.1610 36 1 3.2854 6.1821 1.2092 37 1 5.6625 6.2083 1.8852 38 1 5.5186 6.0561 0.1178 39 1 5.9473 3.7414 2.0614 40 1 7.2057 4.4735 1.0369 41 1 8.0656 2.5858 -1.1673 42 1 8.3277 2.8284 0.5763 43 1 8.1560 0.1216 -0.8247 44 1 9.6590 0.9123 -0.2897 45 1 8.7988 -0.7939 1.3537 46 1 8.9148 0.8442 2.0435 47 1 8.7806 -2.2633 3.7092 48 1 6.5185 2.1571 2.2211 49 1 5.1249 1.2189 1.6255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053065675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:29 Heat of formation + Delta-G solvation = 20.266627 kcal Electronic energy + Delta-G solvation = -28241.288784 eV Core-core repulsion = 24717.495842 eV Total energy + Delta-G solvation = -3523.792942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.74646 -37.36558 -36.87812 -33.54276 -32.84136 -31.61135 -30.10752 -29.75038 -28.73687 -28.18950 -25.07929 -24.77586 -23.63496 -21.87320 -21.13069 -20.82358 -18.96191 -18.45883 -16.72658 -16.47455 -16.31707 -15.64165 -15.31581 -14.72407 -14.47970 -14.30600 -14.11807 -13.85327 -13.77499 -13.60807 -13.34057 -13.23106 -13.10607 -12.84521 -12.44336 -12.27423 -12.10644 -12.07448 -11.87009 -11.51367 -11.10240 -11.06454 -10.77625 -10.72348 -10.57066 -10.30825 -10.27191 -9.96844 -9.82074 -9.79485 -9.57460 -9.22385 -9.09901 -8.55213 -8.20417 -8.10650 -7.53747 -6.19125 -5.49940 -2.98894 1.53637 2.60106 2.83628 3.13424 3.54480 3.59498 3.64571 4.46928 4.64398 4.72862 4.77877 4.90376 4.96051 5.04102 5.07560 5.09331 5.13042 5.27282 5.30982 5.44476 5.59493 5.61265 5.64447 5.69175 5.80741 5.85652 5.91423 5.94764 6.05074 6.06455 6.11207 6.33814 6.42804 6.55552 6.61963 6.74257 6.83786 6.97053 7.00480 7.17841 7.30414 7.47184 7.58819 7.75213 8.07076 8.13473 8.50162 8.85629 9.56339 10.17631 10.77290 11.56564 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.006056 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.293128 B = 4622.409470 C = 6775.514594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.169 6.169 3 C -0.127 4.127 4 C 0.506 3.494 5 O -0.454 6.454 6 N -0.607 5.607 7 C 0.110 3.890 8 C -0.135 4.135 9 C -0.118 4.118 10 C -0.139 4.139 11 C 0.159 3.841 12 H 0.062 0.938 13 C -0.110 4.110 14 H 0.109 0.891 15 C -0.107 4.107 16 C -0.141 4.141 17 C 0.166 3.834 18 N -0.585 5.585 19 C -0.225 4.225 20 H 0.066 0.934 21 C -0.002 4.002 22 N -0.914 5.914 23 Si 0.897 3.103 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.166 3.834 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.041 0.959 45 H 0.096 0.904 46 H 0.008 0.992 47 H 0.249 0.751 48 H 0.000 1.000 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.938 15.859 -7.860 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.055 5.945 3 C -0.279 4.279 4 C 0.291 3.709 5 O -0.326 6.326 6 N -0.343 5.343 7 C -0.014 4.014 8 C -0.174 4.174 9 C -0.156 4.156 10 C -0.177 4.177 11 C 0.056 3.944 12 H 0.080 0.920 13 C -0.130 4.130 14 H 0.127 0.873 15 C -0.145 4.145 16 C -0.180 4.180 17 C 0.041 3.959 18 N -0.307 5.307 19 C -0.356 4.356 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.561 5.561 23 Si 0.728 3.272 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.204 1.204 27 C 0.040 3.960 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.114 0.886 46 H 0.026 0.974 47 H 0.059 0.941 48 H 0.017 0.983 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.787 14.310 -7.740 20.091 hybrid contribution -1.312 0.578 0.396 1.487 sum -13.099 14.888 -7.344 21.147 Atomic orbital electron populations 1.23531 0.97198 1.06519 1.04317 1.88018 1.03012 1.05554 1.97876 1.23620 0.98982 0.99364 1.05905 1.19587 0.88420 0.83701 0.79157 1.90992 1.58904 1.38695 1.44052 1.47926 1.07018 1.04774 1.74619 1.21675 0.94192 0.86803 0.98710 1.21914 0.97050 0.99433 0.98959 1.21519 0.94646 0.97766 1.01666 1.22149 0.99991 0.95160 1.00425 1.21377 0.77866 0.97947 0.97166 0.91975 1.22434 0.93341 0.93410 1.03813 0.87302 1.21562 0.96215 0.97974 0.98777 1.22185 0.97412 0.95990 1.02410 1.20914 0.85318 1.01237 0.88478 1.43898 1.04360 1.04921 1.77510 1.19268 0.98636 0.96198 1.21462 0.91596 1.25286 0.96631 0.99775 0.98146 1.69917 1.08683 1.37164 1.40310 0.86345 0.79390 0.83341 0.78173 1.21732 1.21962 1.20441 1.21313 0.96432 0.87829 0.90464 0.90955 0.87951 0.90789 0.87983 0.88111 0.90346 0.91609 0.91286 0.91108 0.91916 0.92208 0.90147 0.90762 0.94523 0.93365 0.93069 0.94025 0.88641 0.97386 0.94075 0.98274 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.76 101.05 1.09 -0.29 16 2 S -0.17 -2.48 21.52 -107.50 -2.31 -4.79 16 3 C -0.13 -1.52 4.79 36.01 0.17 -1.34 16 4 C 0.51 7.85 6.75 -10.99 -0.07 7.77 16 5 O -0.45 -9.31 9.19 5.56 0.05 -9.26 16 6 N -0.61 -7.93 2.95 -165.19 -0.49 -8.42 16 7 C 0.11 0.97 6.34 -3.69 -0.02 0.94 16 8 C -0.14 -1.16 6.08 -26.61 -0.16 -1.32 16 9 C -0.12 -1.15 5.88 -26.69 -0.16 -1.31 16 10 C -0.14 -1.83 4.66 -26.61 -0.12 -1.96 16 11 C 0.16 2.31 2.63 -67.60 -0.18 2.13 16 12 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 13 C -0.11 -2.10 1.57 -90.50 -0.14 -2.24 16 14 H 0.11 2.40 5.67 -53.06 -0.30 2.10 16 15 C -0.11 -1.99 4.95 -26.69 -0.13 -2.12 16 16 C -0.14 -3.03 6.08 -26.60 -0.16 -3.19 16 17 C 0.17 4.36 5.26 -3.71 -0.02 4.34 16 18 N -0.59 -16.00 3.00 -172.26 -0.52 -16.52 16 19 C -0.23 -6.75 9.55 -15.06 -0.14 -6.89 16 20 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 21 C 0.00 -0.06 5.31 -17.43 -0.09 -0.15 16 22 N -0.91 -28.18 10.64 55.49 0.59 -27.59 16 23 Si 0.90 23.49 29.55 -169.99 -5.02 18.47 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 25 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 26 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 27 C 0.17 3.80 4.43 -3.67 -0.02 3.78 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.10 1.02 7.59 -51.92 -0.39 0.62 16 32 H 0.10 0.92 8.03 -51.93 -0.42 0.50 16 33 H 0.08 0.55 5.95 -51.93 -0.31 0.24 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.26 5.89 -51.92 -0.31 0.95 16 40 H 0.07 0.98 7.00 -51.93 -0.36 0.61 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.87 6.89 -51.93 -0.36 0.52 16 43 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.10 2.81 5.94 -51.93 -0.31 2.50 16 46 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.00 0.00 5.90 -51.93 -0.31 -0.31 16 49 H 0.07 1.65 4.89 -51.72 -0.25 1.40 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -34.19 368.95 -10.66 -44.85 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.36 Total: -0.46 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.17 Total: -1.84 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.41 Total: -52.52 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.05 Total: -9.26 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.31 Total: -4.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.19 -10.66 -44.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053065675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.118 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds