Wall clock time and date at job start Tue Mar 31 2020 14:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00178 * 2 1 4 4 C 1.50700 * 109.47371 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99918 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00243 * 180.02562 * 4 3 2 7 7 C 1.46968 * 120.65000 * 2.40665 * 6 4 3 8 8 C 1.53194 * 108.88453 * 126.46671 * 7 6 4 9 9 C 1.53038 * 109.31180 * 54.55698 * 8 7 6 10 10 C 1.53037 * 109.53968 * 298.63142 * 9 8 7 11 11 C 1.46919 * 120.63179 * 182.22698 * 6 4 3 12 12 H 1.09003 * 109.59007 * 113.67828 * 11 6 4 13 13 C 1.52997 * 109.58739 * 353.39608 * 11 6 4 14 14 H 1.08995 * 109.50265 * 51.96954 * 13 11 6 15 15 C 1.53038 * 109.49708 * 172.03637 * 13 11 6 16 16 C 1.53045 * 109.53693 * 181.34820 * 15 13 11 17 17 C 1.53200 * 109.31012 * 298.63266 * 16 15 13 18 18 N 1.46923 * 108.77581 * 54.63809 * 17 16 15 19 19 C 1.36931 * 120.63415 * 126.40832 * 18 17 16 20 20 H 1.07994 * 120.00663 * 215.51402 * 19 18 17 21 21 C 1.38818 * 119.99764 * 35.51521 * 19 18 17 22 22 N 1.31616 * 119.99868 * 356.07221 * 21 19 18 23 23 Si 1.86798 * 120.00067 * 176.07028 * 21 19 18 24 24 H 1.48502 * 109.46817 * 89.99899 * 23 21 19 25 25 H 1.48500 * 109.47150 * 210.00116 * 23 21 19 26 26 H 1.48505 * 109.47332 * 330.00192 * 23 21 19 27 27 C 1.46998 * 118.75358 * 306.38794 * 18 17 16 28 28 H 1.08997 * 109.47313 * 60.00195 * 1 2 3 29 29 H 1.08997 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47046 * 299.99642 * 1 2 3 31 31 H 1.09003 * 109.46576 * 60.00203 * 3 2 1 32 32 H 1.08996 * 109.47390 * 300.00518 * 3 2 1 33 33 H 1.09000 * 109.59461 * 6.60483 * 7 6 4 34 34 H 1.08997 * 109.58029 * 246.31936 * 7 6 4 35 35 H 1.09000 * 109.50013 * 294.60257 * 8 7 6 36 36 H 1.09000 * 109.52114 * 174.52323 * 8 7 6 37 37 H 1.09006 * 109.45666 * 178.61583 * 9 8 7 38 38 H 1.08993 * 109.46319 * 58.65346 * 9 8 7 39 39 H 1.09008 * 109.50190 * 301.41440 * 10 9 8 40 40 H 1.08997 * 109.52847 * 181.33796 * 10 9 8 41 41 H 1.08997 * 109.46397 * 301.36727 * 15 13 11 42 42 H 1.09004 * 109.46294 * 61.33313 * 15 13 11 43 43 H 1.08993 * 109.49732 * 58.58273 * 16 15 13 44 44 H 1.09003 * 109.50005 * 178.68597 * 16 15 13 45 45 H 1.09004 * 109.58316 * 174.42259 * 17 16 15 46 46 H 1.09001 * 109.58813 * 294.70385 * 17 16 15 47 47 H 0.97005 * 119.99740 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.58529 * 293.82979 * 27 18 17 49 49 H 1.09000 * 109.62783 * 173.37549 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 8 4.4404 0.9621 0.0006 6 7 4.2576 3.1730 0.0013 7 6 3.3985 4.3643 0.0544 8 6 3.8513 5.2506 1.2190 9 6 5.3432 5.5576 1.0711 10 6 6.1414 4.2527 1.1185 11 6 5.7146 3.3550 -0.0472 12 1 5.9931 3.8244 -0.9908 13 6 6.4057 1.9953 0.0727 14 1 5.9886 1.3089 -0.6641 15 6 7.9065 2.1614 -0.1760 16 6 8.5938 0.7967 -0.0894 17 6 8.3976 0.2189 1.3158 18 7 6.9603 0.1910 1.6192 19 6 6.3551 -0.9685 2.0246 20 1 5.3434 -1.1861 1.7160 21 6 7.0422 -1.8643 2.8324 22 7 8.3004 -1.6371 3.1450 23 14 6.1812 -3.3921 3.4756 24 1 6.3632 -4.5061 2.5107 25 1 6.7636 -3.7733 4.7874 26 1 4.7322 -3.1115 3.6401 27 6 6.1840 1.4315 1.4798 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8032 2.2370 0.8901 32 1 1.8031 2.2371 -0.8899 33 1 2.3626 4.0614 0.2070 34 1 3.4834 4.9179 -0.8806 35 1 3.6786 4.7300 2.1610 36 1 3.2854 6.1821 1.2092 37 1 5.6625 6.2083 1.8852 38 1 5.5186 6.0561 0.1178 39 1 5.9473 3.7414 2.0614 40 1 7.2057 4.4735 1.0369 41 1 8.0656 2.5858 -1.1673 42 1 8.3277 2.8284 0.5763 43 1 8.1560 0.1216 -0.8247 44 1 9.6590 0.9123 -0.2897 45 1 8.7988 -0.7939 1.3537 46 1 8.9148 0.8442 2.0435 47 1 8.7806 -2.2633 3.7092 48 1 6.5185 2.1571 2.2211 49 1 5.1249 1.2189 1.6255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053065675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:29 Heat of formation + Delta-G solvation = -0.944328 kcal Electronic energy + Delta-G solvation = -28242.208560 eV Core-core repulsion = 24717.495842 eV Total energy + Delta-G solvation = -3524.712718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93866 -38.81145 -38.21314 -35.32790 -33.93773 -33.14344 -32.16047 -30.72241 -29.65173 -29.47333 -27.18440 -25.89600 -24.78463 -23.78084 -22.58106 -21.90325 -20.53848 -19.67225 -18.63482 -17.71927 -17.48410 -16.97722 -16.67886 -16.39282 -15.70535 -15.61759 -15.33710 -15.07810 -15.01342 -14.78138 -14.62654 -14.45588 -14.14874 -14.11255 -13.89790 -13.82783 -13.54598 -13.26186 -13.01484 -12.97538 -12.82688 -12.70452 -12.29298 -12.10296 -12.05928 -11.84859 -11.67807 -11.55996 -11.53130 -11.30877 -11.05279 -10.81383 -10.75473 -10.47389 -9.83762 -9.32726 -8.64861 -8.38875 -7.78830 -5.31711 0.59353 1.40502 1.42291 1.53359 1.72049 1.72835 2.12840 2.52559 3.32527 3.48213 3.81672 3.90655 3.97687 4.04926 4.11434 4.16894 4.22766 4.24405 4.31398 4.33846 4.38838 4.39357 4.42104 4.61687 4.65034 4.72592 4.83053 4.89587 4.91585 4.97178 5.03167 5.04093 5.09103 5.14609 5.19620 5.28032 5.29784 5.46711 5.50613 5.55215 5.59243 5.67298 5.71810 5.85858 6.01696 6.52230 6.56936 7.26447 7.38093 8.00728 8.52290 9.24140 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.006056 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.293128 B = 4622.409470 C = 6775.514594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.286 6.286 3 C -0.099 4.099 4 C 0.495 3.505 5 O -0.516 6.516 6 N -0.604 5.604 7 C 0.103 3.897 8 C -0.133 4.133 9 C -0.113 4.113 10 C -0.135 4.135 11 C 0.164 3.836 12 H 0.087 0.913 13 C -0.097 4.097 14 H 0.081 0.919 15 C -0.102 4.102 16 C -0.131 4.131 17 C 0.173 3.827 18 N -0.605 5.605 19 C -0.236 4.236 20 H 0.048 0.952 21 C -0.053 4.053 22 N -0.939 5.939 23 Si 0.961 3.039 24 H -0.286 1.286 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.175 3.825 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.065 0.935 45 H 0.058 0.942 46 H -0.011 1.011 47 H 0.247 0.753 48 H -0.010 1.010 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 19.111 -9.153 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.062 6.062 3 C -0.249 4.249 4 C 0.282 3.718 5 O -0.392 6.392 6 N -0.339 5.339 7 C -0.018 4.018 8 C -0.171 4.171 9 C -0.150 4.150 10 C -0.174 4.174 11 C 0.061 3.939 12 H 0.104 0.896 13 C -0.116 4.116 14 H 0.099 0.901 15 C -0.140 4.140 16 C -0.171 4.171 17 C 0.047 3.953 18 N -0.327 5.327 19 C -0.367 4.367 20 H 0.065 0.935 21 C -0.247 4.247 22 N -0.587 5.587 23 Si 0.790 3.210 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.201 1.201 27 C 0.051 3.949 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.007 0.993 47 H 0.057 0.943 48 H 0.008 0.992 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.090 17.630 -9.045 24.314 hybrid contribution -0.653 -0.392 0.791 1.098 sum -14.743 17.239 -8.254 24.138 Atomic orbital electron populations 1.23495 0.91556 1.07341 1.06208 1.88431 1.09379 1.10140 1.98222 1.23488 0.96343 0.96515 1.08595 1.20272 0.89903 0.83642 0.77981 1.90983 1.60592 1.40681 1.46984 1.48056 1.06904 1.05581 1.73318 1.22063 0.94502 0.85186 1.00097 1.21923 0.96604 1.00632 0.97907 1.21501 0.94814 0.95608 1.03113 1.22075 1.00747 0.96597 0.97948 1.21231 0.78758 0.95137 0.98815 0.89557 1.22082 0.94108 0.95573 0.99880 0.90086 1.21533 0.95513 0.96056 1.00940 1.22017 0.99269 0.97353 0.98423 1.20681 0.84711 0.98999 0.90901 1.44154 1.04926 1.05717 1.77936 1.19321 0.98039 0.97700 1.21666 0.93463 1.25973 0.97286 1.02893 0.98536 1.70104 1.09646 1.38163 1.40743 0.85350 0.78355 0.79778 0.77557 1.21272 1.21278 1.20067 1.21328 0.94826 0.85876 0.92888 0.88571 0.87702 0.89217 0.85662 0.84490 0.88017 0.88971 0.93167 0.87790 0.91209 0.90133 0.93541 0.90848 0.91020 0.92701 0.94658 0.91677 0.92392 0.99344 0.94342 0.99204 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 10.76 113.37 1.22 -0.74 16 2 S -0.29 -8.48 21.52 -56.49 -1.22 -9.69 16 3 C -0.10 -2.16 4.79 71.24 0.34 -1.82 16 4 C 0.49 15.12 6.75 87.66 0.59 15.71 16 5 O -0.52 -22.13 9.19 -3.03 -0.03 -22.15 16 6 N -0.60 -14.49 2.95 -794.94 -2.35 -16.84 16 7 C 0.10 1.35 6.34 86.35 0.55 1.90 16 8 C -0.13 -1.73 6.08 30.67 0.19 -1.55 16 9 C -0.11 -1.78 5.88 30.62 0.18 -1.60 16 10 C -0.14 -3.35 4.66 30.67 0.14 -3.21 16 11 C 0.16 4.47 2.63 44.98 0.12 4.59 16 12 H 0.09 2.01 8.13 -2.39 -0.02 1.99 16 13 C -0.10 -3.73 1.57 -10.71 -0.02 -3.74 16 14 H 0.08 3.70 5.67 -25.92 -0.15 3.55 16 15 C -0.10 -3.73 4.95 30.62 0.15 -3.58 16 16 C -0.13 -5.78 6.08 30.68 0.19 -5.60 16 17 C 0.17 9.56 5.26 86.37 0.45 10.02 16 18 N -0.60 -35.01 3.00 -698.89 -2.10 -37.11 16 19 C -0.24 -14.99 9.55 84.04 0.80 -14.19 16 20 H 0.05 3.13 7.83 -2.91 -0.02 3.11 16 21 C -0.05 -3.31 5.31 84.86 0.45 -2.86 16 22 N -0.94 -60.52 10.64 21.65 0.23 -60.29 16 23 Si 0.96 50.33 29.55 68.60 2.03 52.36 16 24 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 25 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 26 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 27 C 0.18 8.47 4.43 86.35 0.38 8.85 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.13 2.12 7.59 -2.39 -0.02 2.11 16 32 H 0.14 1.97 8.03 -2.39 -0.02 1.95 16 33 H 0.10 0.89 5.95 -2.39 -0.01 0.87 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 1.46 5.89 -2.38 -0.01 1.45 16 40 H 0.07 1.80 7.00 -2.39 -0.02 1.79 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.94 6.89 -2.38 -0.02 1.92 16 43 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.06 3.62 5.94 -2.38 -0.01 3.61 16 46 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 47 H 0.25 15.32 8.31 -92.70 -0.77 14.55 16 48 H -0.01 -0.47 5.90 -2.39 -0.01 -0.48 16 49 H 0.05 2.71 4.89 -4.73 -0.02 2.68 16 Total: -1.00 -82.86 368.95 3.09 -79.78 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.78 Total: 11.77 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.74 Total: 2.18 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -4.21 Total: -114.24 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.03 Total: -22.15 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.03 Total: 52.36 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.22 Total: -9.69 kcal Total: -82.86 3.09 -79.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053065675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.832 kcal (2) G-P(sol) polarization free energy of solvation -82.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds