Wall clock time and date at job start Tue Mar 31 2020 14:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81393 * 103.00170 * 2 1 4 4 C 1.50699 * 109.47460 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99633 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00040 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.63254 * 356.85918 * 6 4 3 8 8 C 1.53185 * 108.77411 * 233.58235 * 7 6 4 9 9 C 1.53040 * 109.31727 * 305.36449 * 8 7 6 10 10 C 1.53042 * 109.53293 * 61.36425 * 9 8 7 11 11 C 1.46927 * 120.62636 * 176.57475 * 6 4 3 12 12 H 1.09001 * 109.58842 * 246.20172 * 11 6 4 13 13 C 1.53001 * 109.59033 * 6.63390 * 11 6 4 14 14 H 1.09006 * 109.49116 * 308.07232 * 13 11 6 15 15 C 1.53039 * 109.50252 * 68.13233 * 13 11 6 16 16 C 1.53034 * 109.54116 * 181.32111 * 15 13 11 17 17 C 1.53198 * 109.31039 * 298.63439 * 16 15 13 18 18 N 1.46925 * 108.77468 * 54.63732 * 17 16 15 19 19 C 1.36936 * 120.63401 * 126.38644 * 18 17 16 20 20 H 1.07997 * 120.00276 * 215.35072 * 19 18 17 21 21 C 1.38811 * 119.99815 * 35.35121 * 19 18 17 22 22 N 1.31621 * 119.99828 * 355.74146 * 21 19 18 23 23 Si 1.86793 * 120.00279 * 175.74370 * 21 19 18 24 24 H 1.48500 * 109.47399 * 59.99962 * 23 21 19 25 25 H 1.48502 * 109.47551 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47300 * 299.99716 * 23 21 19 27 27 C 1.46930 * 118.76529 * 306.41175 * 18 17 16 28 28 H 1.09002 * 109.47480 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47445 * 59.99800 * 1 2 3 30 30 H 1.09000 * 109.47260 * 299.99718 * 1 2 3 31 31 H 1.09002 * 109.47315 * 300.00078 * 3 2 1 32 32 H 1.09001 * 109.47507 * 60.00283 * 3 2 1 33 33 H 1.09004 * 109.58404 * 353.36967 * 7 6 4 34 34 H 1.08999 * 109.58443 * 113.79679 * 7 6 4 35 35 H 1.09000 * 109.50173 * 65.31436 * 8 7 6 36 36 H 1.08999 * 109.50058 * 185.38080 * 8 7 6 37 37 H 1.08999 * 109.46719 * 181.38560 * 9 8 7 38 38 H 1.09006 * 109.45785 * 301.36052 * 9 8 7 39 39 H 1.09001 * 109.50026 * 58.59451 * 10 9 8 40 40 H 1.09007 * 109.49263 * 178.68623 * 10 9 8 41 41 H 1.09000 * 109.45988 * 301.34211 * 15 13 11 42 42 H 1.09002 * 109.45213 * 61.30927 * 15 13 11 43 43 H 1.08994 * 109.49654 * 58.58606 * 16 15 13 44 44 H 1.08999 * 109.49530 * 178.68624 * 16 15 13 45 45 H 1.08999 * 109.58244 * 174.42230 * 17 16 15 46 46 H 1.08995 * 109.59099 * 294.70579 * 17 16 15 47 47 H 0.97007 * 120.00116 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.56107 * 293.78215 * 27 18 17 49 49 H 1.08998 * 109.62164 * 173.36037 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7194 1.9373 -0.0006 5 8 4.4404 0.9620 -0.0015 6 7 4.2575 3.1731 -0.0013 7 6 3.3989 4.3633 -0.0706 8 6 3.8664 5.2412 -1.2357 9 6 5.3563 5.5497 -1.0710 10 6 6.1552 4.2446 -1.0987 11 6 5.7134 3.3556 0.0736 12 1 5.9736 3.8347 1.0175 13 6 6.4066 1.9950 -0.0224 14 1 5.9748 1.3142 0.7113 15 6 6.2129 1.4210 -1.4278 16 6 6.8778 0.0454 -1.5150 17 6 8.3805 0.1916 -1.2554 18 7 8.5738 0.8748 0.0309 19 6 9.3633 0.3212 1.0033 20 1 9.1006 0.4391 2.0442 21 6 10.5012 -0.3915 0.6510 22 7 10.7762 -0.6068 -0.6180 23 14 11.6421 -1.0449 1.9779 24 1 10.8938 -1.9767 2.8594 25 1 12.7757 -1.7658 1.3451 26 1 12.1636 0.0878 2.7842 27 6 7.9038 2.1631 0.2550 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 1.8031 2.2371 -0.8900 32 1 1.8032 2.2371 0.8900 33 1 2.3651 4.0591 -0.2342 34 1 3.4742 4.9229 0.8617 35 1 3.7060 4.7137 -2.1759 36 1 3.2999 6.1724 -1.2397 37 1 5.6859 6.1946 -1.8856 38 1 5.5195 6.0550 -0.1190 39 1 5.9732 3.7265 -2.0403 40 1 7.2182 4.4668 -1.0048 41 1 5.1475 1.3233 -1.6365 42 1 6.6663 2.0903 -2.1590 43 1 6.4421 -0.6173 -0.7673 44 1 6.7193 -0.3729 -2.5090 45 1 8.8425 -0.7949 -1.2182 46 1 8.8341 0.7777 -2.0546 47 1 11.5713 -1.1052 -0.8642 48 1 8.3185 2.9123 -0.4194 49 1 8.0509 2.4773 1.2883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053065677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:35 Heat of formation + Delta-G solvation = -3.247946 kcal Electronic energy + Delta-G solvation = -27835.566066 eV Core-core repulsion = 24310.753456 eV Total energy + Delta-G solvation = -3524.812610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.98428 -38.86326 -38.22621 -35.36840 -33.89427 -33.16235 -32.23508 -30.75735 -29.71438 -29.49898 -27.18657 -25.91114 -24.79940 -23.80724 -22.63246 -21.88825 -20.60853 -19.69213 -18.62134 -17.76882 -17.50126 -16.99579 -16.83410 -16.35209 -15.72607 -15.54643 -15.37131 -15.14606 -15.01117 -14.85709 -14.62894 -14.43721 -14.30744 -14.11326 -13.98783 -13.75955 -13.36908 -13.14968 -13.12037 -12.99483 -12.80680 -12.76058 -12.31716 -12.21943 -12.05600 -11.91164 -11.84885 -11.56045 -11.51562 -11.18837 -11.01025 -10.93779 -10.78748 -10.52419 -9.87056 -9.37799 -8.65555 -8.49415 -7.84065 -5.41241 0.57630 1.43453 1.47048 1.53647 1.67498 1.71148 2.08541 2.49632 3.28122 3.45189 3.76394 3.89658 3.90518 4.03487 4.09041 4.14943 4.24532 4.27578 4.31748 4.39332 4.40091 4.40230 4.45097 4.55752 4.68953 4.71554 4.82822 4.87324 4.92769 4.93615 4.94211 4.99740 5.11939 5.15925 5.16834 5.24818 5.28695 5.42881 5.50153 5.55887 5.56676 5.60769 5.68433 5.80052 5.98421 6.45984 6.52105 7.18317 7.31711 7.88044 8.43342 9.18654 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.004063 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.659115 B = 6889.536832 C = 8273.516944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.280 6.280 3 C -0.101 4.101 4 C 0.502 3.498 5 O -0.527 6.527 6 N -0.601 5.601 7 C 0.101 3.899 8 C -0.129 4.129 9 C -0.116 4.116 10 C -0.132 4.132 11 C 0.163 3.837 12 H 0.075 0.925 13 C -0.089 4.089 14 H 0.078 0.922 15 C -0.067 4.067 16 C -0.124 4.124 17 C 0.179 3.821 18 N -0.610 5.610 19 C -0.269 4.269 20 H 0.058 0.942 21 C -0.046 4.046 22 N -0.934 5.934 23 Si 0.972 3.028 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.273 1.273 27 C 0.149 3.851 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.030 0.970 44 H 0.046 0.954 45 H 0.059 0.941 46 H -0.010 1.010 47 H 0.250 0.750 48 H 0.015 0.985 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.583 14.853 -0.682 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.056 6.056 3 C -0.252 4.252 4 C 0.290 3.710 5 O -0.405 6.405 6 N -0.335 5.335 7 C -0.020 4.020 8 C -0.167 4.167 9 C -0.153 4.153 10 C -0.170 4.170 11 C 0.059 3.941 12 H 0.093 0.907 13 C -0.108 4.108 14 H 0.096 0.904 15 C -0.104 4.104 16 C -0.163 4.163 17 C 0.053 3.947 18 N -0.333 5.333 19 C -0.399 4.399 20 H 0.076 0.924 21 C -0.241 4.241 22 N -0.580 5.580 23 Si 0.799 3.201 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.198 1.198 27 C 0.023 3.977 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.008 0.992 47 H 0.060 0.940 48 H 0.033 0.967 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.398 13.396 -0.742 26.971 hybrid contribution 0.440 0.155 0.412 0.622 sum -22.958 13.551 -0.330 26.661 Atomic orbital electron populations 1.23510 0.91534 1.07432 1.06226 1.88182 1.09385 1.09782 1.98237 1.23514 0.95974 0.96866 1.08828 1.20246 0.89897 0.83404 0.77496 1.90915 1.60848 1.40756 1.47944 1.48068 1.06728 1.05861 1.72837 1.22093 0.94601 0.85266 1.00055 1.21902 0.96032 1.00716 0.98056 1.21522 0.95246 0.95650 1.02893 1.22122 1.00252 0.96687 0.97958 1.21245 0.78936 0.95304 0.98619 0.90744 1.22015 0.94276 0.95546 0.99010 0.90419 1.21450 0.99087 0.94377 0.95483 1.21930 0.97572 0.98236 0.98552 1.20655 0.91328 0.97054 0.85643 1.44139 1.55310 1.19507 1.14357 1.19424 1.01673 1.30407 0.88389 0.92418 1.26084 0.98366 1.01526 0.98146 1.70123 1.26966 1.44261 1.16649 0.85287 0.78302 0.77997 0.78510 1.20460 1.21510 1.19826 1.21176 0.91996 0.86936 0.97597 0.87544 0.88937 0.88981 0.84943 0.84952 0.87410 0.89644 0.92216 0.87894 0.90982 0.90943 0.92277 0.91829 0.91735 0.94649 0.95062 0.93489 0.92313 0.99222 0.94039 0.96721 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 10.76 113.37 1.22 -0.23 16 2 S -0.28 -6.70 21.52 -56.49 -1.22 -7.92 16 3 C -0.10 -1.76 4.79 71.24 0.34 -1.42 16 4 C 0.50 13.34 6.68 87.66 0.59 13.93 16 5 O -0.53 -19.89 9.06 -3.05 -0.03 -19.92 16 6 N -0.60 -13.25 2.94 -794.22 -2.33 -15.59 16 7 C 0.10 1.16 6.33 86.36 0.55 1.71 16 8 C -0.13 -1.42 6.08 30.67 0.19 -1.23 16 9 C -0.12 -1.80 5.88 30.62 0.18 -1.62 16 10 C -0.13 -3.23 4.66 30.82 0.14 -3.09 16 11 C 0.16 4.55 2.65 45.12 0.12 4.67 16 12 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 13 C -0.09 -3.49 1.57 -10.72 -0.02 -3.50 16 14 H 0.08 3.62 5.71 -23.14 -0.13 3.49 16 15 C -0.07 -2.72 3.47 30.62 0.11 -2.61 16 16 C -0.12 -5.97 6.02 30.67 0.18 -5.78 16 17 C 0.18 10.06 5.27 86.36 0.45 10.51 16 18 N -0.61 -34.66 3.00 -699.09 -2.10 -36.76 16 19 C -0.27 -16.32 9.55 84.03 0.80 -15.51 16 20 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 21 C -0.05 -2.77 5.32 84.86 0.45 -2.32 16 22 N -0.93 -58.94 10.61 21.65 0.23 -58.71 16 23 Si 0.97 47.79 29.56 68.60 2.03 49.82 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 27 C 0.15 6.91 5.71 86.36 0.49 7.41 16 28 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.13 1.51 7.56 -2.39 -0.02 1.49 16 32 H 0.13 1.53 8.06 -2.39 -0.02 1.51 16 33 H 0.11 0.64 5.95 -2.39 -0.01 0.62 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.06 1.62 6.06 -2.39 -0.01 1.61 16 40 H 0.06 1.73 6.88 -2.38 -0.02 1.72 16 41 H 0.06 2.53 5.21 -2.41 -0.01 2.52 16 42 H 0.04 1.41 6.29 -2.39 -0.02 1.39 16 43 H 0.03 1.64 8.00 -2.39 -0.02 1.62 16 44 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 3.71 5.91 -2.39 -0.01 3.70 16 46 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 48 H 0.01 0.68 6.66 -2.39 -0.02 0.67 16 49 H 0.04 1.97 7.93 -2.39 -0.02 1.95 16 Total: -1.00 -79.04 368.66 3.19 -75.85 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.80 Total: 12.30 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.80 Total: 0.91 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.20 Total: -111.05 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.03 Total: -19.92 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -1.22 Total: -7.92 kcal Total: -79.04 3.19 -75.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053065677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.606 kcal (2) G-P(sol) polarization free energy of solvation -79.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds