Wall clock time and date at job start Tue Mar 31 2020 14:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 119.99711 * 2 1 4 4 C 1.53004 * 109.47339 * 275.93824 * 3 2 1 5 5 H 1.09005 * 113.04091 * 65.91913 * 4 3 2 6 6 C 1.53946 * 113.76806 * 294.16944 * 4 3 2 7 7 C 1.53942 * 86.28791 * 222.09083 * 6 4 3 8 8 N 1.47575 * 86.11826 * 23.60696 * 7 6 4 9 9 C 1.36942 * 134.49424 * 155.36423 * 8 7 6 10 10 H 1.07991 * 119.99872 * 185.32137 * 9 8 7 11 11 C 1.38817 * 119.99535 * 5.32130 * 9 8 7 12 12 N 1.31614 * 120.00346 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99577 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46840 * 90.00091 * 13 11 9 15 15 H 1.48499 * 109.47065 * 209.99823 * 13 11 9 16 16 H 1.48501 * 109.47631 * 330.00257 * 13 11 9 17 17 C 1.34777 * 120.00416 * 180.02562 * 2 1 3 18 18 O 1.21274 * 120.00287 * 180.02562 * 17 2 1 19 19 C 1.50699 * 119.99546 * 359.97438 * 17 2 1 20 20 H 1.08998 * 115.54828 * 325.58505 * 19 17 2 21 21 C 1.53045 * 117.48076 * 179.97438 * 19 17 2 22 22 H 1.08995 * 119.41705 * 140.82283 * 21 19 17 23 23 C 1.53450 * 118.57805 * 345.16629 * 21 19 17 24 24 C 1.53652 * 105.69825 * 295.68380 * 23 21 19 25 25 C 1.38784 * 129.42428 * 179.90017 * 24 23 21 26 26 C 1.38017 * 120.30958 * 180.79124 * 25 24 23 27 27 C 1.38252 * 119.87822 * 359.97347 * 26 25 24 28 28 C 1.38009 * 119.88802 * 359.97438 * 27 26 25 29 29 C 1.37810 * 110.75780 * 0.59156 * 24 23 21 30 30 C 1.50948 * 110.47709 * 359.35365 * 29 24 23 31 31 H 1.09006 * 117.44085 * 220.73797 * 30 29 24 32 32 H 1.08999 * 109.47028 * 85.81119 * 1 2 3 33 33 H 1.09006 * 109.46797 * 205.80726 * 1 2 3 34 34 H 1.08994 * 109.47585 * 325.80404 * 1 2 3 35 35 H 1.09000 * 109.47085 * 155.93842 * 3 2 1 36 36 H 1.09005 * 109.47342 * 35.93338 * 3 2 1 37 37 H 1.08998 * 113.74329 * 107.74308 * 6 4 3 38 38 H 1.09001 * 113.73808 * 336.43749 * 6 4 3 39 39 H 1.09000 * 113.77212 * 137.91207 * 7 6 4 40 40 H 1.09004 * 113.76640 * 269.30005 * 7 6 4 41 41 H 0.96997 * 120.00236 * 180.02562 * 12 11 9 42 42 H 1.09005 * 109.91620 * 56.35700 * 23 21 19 43 43 H 1.08994 * 109.91796 * 177.66048 * 23 21 19 44 44 H 1.08000 * 119.84273 * 0.77329 * 25 24 23 45 45 H 1.07996 * 120.06022 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.05680 * 180.02562 * 27 26 25 47 47 H 1.07999 * 119.84368 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3232 1.7851 -1.4348 5 1 1.3643 2.0573 -1.8758 6 6 3.1923 0.8942 -2.3409 7 6 3.7891 2.2040 -2.8869 8 7 3.3703 2.8104 -1.6083 9 6 3.7862 3.8908 -0.8767 10 1 3.3583 4.0809 0.0964 11 6 4.7578 4.7413 -1.3861 12 7 5.2789 4.5098 -2.5723 13 14 5.3257 6.2146 -0.3879 14 1 6.4734 5.8199 0.4679 15 1 5.7447 7.3033 -1.3068 16 1 4.2105 6.6917 0.4688 17 6 2.1390 -1.1672 -0.0005 18 8 3.3517 -1.1671 -0.0001 19 6 1.3855 -2.4722 -0.0005 20 1 0.4481 -2.4738 0.5556 21 6 2.2082 -3.7627 -0.0017 22 1 1.8759 -4.6101 0.5979 23 6 3.7010 -3.6813 -0.3478 24 6 3.7639 -3.2080 -1.8083 25 6 4.8709 -2.9684 -2.6102 26 6 4.7087 -2.5265 -3.9076 27 6 3.4377 -2.3218 -4.4116 28 6 2.3357 -2.5606 -3.6159 29 6 2.4969 -3.0044 -2.3108 30 6 1.4563 -3.3281 -1.2663 31 1 0.5631 -3.8597 -1.5950 32 1 -0.3633 0.0751 -1.0249 33 1 -0.3633 -0.9252 0.4474 34 1 -0.3634 0.8499 0.5775 35 1 3.1918 1.1143 0.4190 36 1 1.6585 1.9995 0.6031 37 1 2.6221 0.3304 -3.0791 38 1 3.9083 0.2796 -1.7953 39 1 4.8699 2.1707 -3.0243 40 1 3.2608 2.5993 -3.7546 41 1 5.9581 5.1039 -2.9281 42 1 4.2003 -2.9829 0.3238 43 1 4.1555 -4.6686 -0.2663 44 1 5.8641 -3.1282 -2.2171 45 1 5.5730 -2.3409 -4.5280 46 1 3.3073 -1.9765 -5.4266 47 1 1.3431 -2.4009 -4.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085861210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:02 Heat of formation + Delta-G solvation = 94.996190 kcal Electronic energy + Delta-G solvation = -29000.919198 eV Core-core repulsion = 25344.922821 eV Total energy + Delta-G solvation = -3655.996376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17679 -39.02941 -37.69613 -36.49903 -35.05382 -32.07408 -31.52284 -30.44332 -28.67386 -27.70233 -27.60988 -26.33473 -24.34088 -23.15876 -22.64271 -21.69577 -20.80884 -20.31903 -18.87372 -18.44518 -17.35885 -16.55530 -15.96381 -15.77476 -15.55608 -15.10763 -14.72459 -14.61960 -14.27190 -13.91750 -13.52633 -13.42639 -13.21117 -12.98929 -12.79880 -12.66680 -12.40348 -12.23380 -12.09217 -11.81145 -11.71460 -11.30107 -11.11568 -10.94042 -10.79347 -10.68157 -10.64082 -10.53355 -10.32270 -10.20600 -9.76256 -9.59371 -9.41113 -9.13395 -8.69574 -8.50900 -8.35460 -8.15085 -6.74675 -5.66924 -2.98081 1.50316 1.64936 2.74355 3.20182 3.44423 3.48707 3.50634 3.61913 3.99944 4.32253 4.49470 4.53882 4.62966 4.88168 4.91855 5.08614 5.16208 5.19529 5.27503 5.34856 5.39157 5.45173 5.53622 5.56807 5.64660 5.71404 5.75179 5.80265 5.86293 5.91706 6.01591 6.09016 6.11829 6.22918 6.27749 6.37069 6.52554 6.63936 6.69990 6.73785 6.83793 6.87393 6.89745 6.95818 7.20978 7.39170 7.61075 7.72085 7.73697 8.09368 8.54577 9.14639 9.81281 10.73864 11.50797 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.004253 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.375614 B = 6582.028645 C = 7485.526019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.607 5.607 3 C 0.118 3.882 4 C 0.128 3.872 5 H 0.037 0.963 6 C -0.147 4.147 7 C 0.165 3.835 8 N -0.600 5.600 9 C -0.221 4.221 10 H 0.077 0.923 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.540 3.460 18 O -0.518 6.518 19 C -0.159 4.159 20 H 0.130 0.870 21 C -0.126 4.126 22 H 0.125 0.875 23 C -0.055 4.055 24 C -0.057 4.057 25 C -0.108 4.108 26 C -0.108 4.108 27 C -0.124 4.124 28 C -0.095 4.095 29 C -0.083 4.083 30 C -0.092 4.092 31 H 0.121 0.879 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.252 0.748 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 -19.624 1.983 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.340 5.340 3 C -0.005 4.005 4 C 0.020 3.980 5 H 0.054 0.946 6 C -0.185 4.185 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.348 4.348 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.738 3.262 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.327 3.673 18 O -0.393 6.393 19 C -0.180 4.180 20 H 0.147 0.853 21 C -0.145 4.145 22 H 0.143 0.857 23 C -0.092 4.092 24 C -0.057 4.057 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.142 4.142 28 C -0.113 4.113 29 C -0.083 4.083 30 C -0.110 4.110 31 H 0.139 0.861 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.090 0.910 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.440 -19.305 2.041 21.586 hybrid contribution -0.122 1.256 0.352 1.310 sum -9.562 -18.049 2.392 20.565 Atomic orbital electron populations 1.21769 0.80359 1.02372 1.01830 1.47738 1.06520 1.06379 1.73385 1.21790 0.97668 0.82382 0.98695 1.22501 0.92853 0.89572 0.93050 0.94556 1.23717 0.99234 0.97184 0.98413 1.22085 0.99201 0.86588 0.88113 1.45962 1.34761 1.30131 1.21755 1.18979 1.17364 1.00581 0.97916 0.90532 1.24771 0.99945 0.98936 0.96728 1.69842 1.30691 1.39002 1.17166 0.86188 0.78597 0.82507 0.78882 1.21608 1.21731 1.20782 1.19498 0.87489 0.83926 0.76338 1.90669 1.13413 1.86496 1.48747 1.22451 1.01800 0.91139 1.02598 0.85257 1.22911 0.94489 0.96529 1.00541 0.85723 1.20921 0.94021 1.01229 0.92998 1.20827 0.92998 0.97320 0.94577 1.20584 0.97854 1.00373 0.93772 1.20997 0.97309 0.98810 0.95493 1.20917 0.92494 1.01017 0.99818 1.20538 0.98686 0.99174 0.92863 1.19432 0.93441 1.01723 0.93720 1.21384 0.99814 1.02273 0.87546 0.86071 0.92728 0.91377 0.91399 0.89015 0.91813 0.94183 0.89783 0.91819 0.96011 0.93785 0.87182 0.90982 0.86558 0.86102 0.86151 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.37 59.85 0.62 1.47 16 2 N -0.61 -9.12 2.80 -181.57 -0.51 -9.63 16 3 C 0.12 2.23 5.44 -4.04 -0.02 2.20 16 4 C 0.13 2.77 4.57 -66.86 -0.31 2.47 16 5 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.15 -3.19 7.29 -25.81 -0.19 -3.38 16 7 C 0.17 4.25 7.39 -2.98 -0.02 4.22 16 8 N -0.60 -16.06 3.57 -170.77 -0.61 -16.67 16 9 C -0.22 -6.36 10.51 -15.06 -0.16 -6.52 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.39 11.53 55.49 0.64 -27.75 16 13 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.54 8.30 6.37 -10.99 -0.07 8.23 16 18 O -0.52 -9.73 10.53 5.56 0.06 -9.67 16 19 C -0.16 -1.77 5.26 -91.77 -0.48 -2.25 16 20 H 0.13 1.05 6.41 -51.93 -0.33 0.72 16 21 C -0.13 -1.31 7.00 -90.15 -0.63 -1.95 16 22 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 23 C -0.06 -0.69 5.89 -26.16 -0.15 -0.84 16 24 C -0.06 -0.82 4.96 -103.09 -0.51 -1.33 16 25 C -0.11 -1.55 10.04 -39.46 -0.40 -1.95 16 26 C -0.11 -1.49 10.05 -39.66 -0.40 -1.89 16 27 C -0.12 -1.66 10.04 -39.66 -0.40 -2.06 16 28 C -0.09 -1.26 10.04 -39.46 -0.40 -1.65 16 29 C -0.08 -1.12 5.27 -104.45 -0.55 -1.68 16 30 C -0.09 -0.99 6.85 -91.46 -0.63 -1.62 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.53 5.83 -51.93 -0.30 0.23 16 34 H 0.07 0.66 8.00 -51.93 -0.42 0.25 16 35 H 0.09 2.02 7.25 -51.93 -0.38 1.64 16 36 H 0.06 1.14 8.01 -51.93 -0.42 0.72 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.98 6.65 -51.93 -0.35 1.64 16 39 H 0.06 1.80 7.41 -51.93 -0.38 1.41 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.11 1.62 6.26 -51.93 -0.33 1.30 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 45 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 47 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -34.46 373.33 -11.70 -46.16 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.10 Total: 2.98 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -4.79 Total: -8.83 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.48 Total: -54.05 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.06 Total: -9.67 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.46 -11.70 -46.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085861210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.156 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds