Wall clock time and date at job start Tue Mar 31 2020 14:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 119.99711 * 2 1 4 4 C 1.53004 * 109.47339 * 275.93824 * 3 2 1 5 5 H 1.09005 * 113.04091 * 65.91913 * 4 3 2 6 6 C 1.53946 * 113.76806 * 294.16944 * 4 3 2 7 7 C 1.53942 * 86.28791 * 222.09083 * 6 4 3 8 8 N 1.47575 * 86.11826 * 23.60696 * 7 6 4 9 9 C 1.36942 * 134.49424 * 155.36423 * 8 7 6 10 10 H 1.07991 * 119.99872 * 185.32137 * 9 8 7 11 11 C 1.38817 * 119.99535 * 5.32130 * 9 8 7 12 12 N 1.31614 * 120.00346 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99577 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46840 * 90.00091 * 13 11 9 15 15 H 1.48499 * 109.47065 * 209.99823 * 13 11 9 16 16 H 1.48501 * 109.47631 * 330.00257 * 13 11 9 17 17 C 1.34777 * 120.00416 * 180.02562 * 2 1 3 18 18 O 1.21274 * 120.00287 * 180.02562 * 17 2 1 19 19 C 1.50699 * 119.99546 * 359.97438 * 17 2 1 20 20 H 1.08998 * 115.54828 * 325.58505 * 19 17 2 21 21 C 1.53045 * 117.48076 * 179.97438 * 19 17 2 22 22 H 1.08995 * 119.41705 * 140.82283 * 21 19 17 23 23 C 1.53450 * 118.57805 * 345.16629 * 21 19 17 24 24 C 1.53652 * 105.69825 * 295.68380 * 23 21 19 25 25 C 1.38784 * 129.42428 * 179.90017 * 24 23 21 26 26 C 1.38017 * 120.30958 * 180.79124 * 25 24 23 27 27 C 1.38252 * 119.87822 * 359.97347 * 26 25 24 28 28 C 1.38009 * 119.88802 * 359.97438 * 27 26 25 29 29 C 1.37810 * 110.75780 * 0.59156 * 24 23 21 30 30 C 1.50948 * 110.47709 * 359.35365 * 29 24 23 31 31 H 1.09006 * 117.44085 * 220.73797 * 30 29 24 32 32 H 1.08999 * 109.47028 * 85.81119 * 1 2 3 33 33 H 1.09006 * 109.46797 * 205.80726 * 1 2 3 34 34 H 1.08994 * 109.47585 * 325.80404 * 1 2 3 35 35 H 1.09000 * 109.47085 * 155.93842 * 3 2 1 36 36 H 1.09005 * 109.47342 * 35.93338 * 3 2 1 37 37 H 1.08998 * 113.74329 * 107.74308 * 6 4 3 38 38 H 1.09001 * 113.73808 * 336.43749 * 6 4 3 39 39 H 1.09000 * 113.77212 * 137.91207 * 7 6 4 40 40 H 1.09004 * 113.76640 * 269.30005 * 7 6 4 41 41 H 0.96997 * 120.00236 * 180.02562 * 12 11 9 42 42 H 1.09005 * 109.91620 * 56.35700 * 23 21 19 43 43 H 1.08994 * 109.91796 * 177.66048 * 23 21 19 44 44 H 1.08000 * 119.84273 * 0.77329 * 25 24 23 45 45 H 1.07996 * 120.06022 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.05680 * 180.02562 * 27 26 25 47 47 H 1.07999 * 119.84368 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3232 1.7851 -1.4348 5 1 1.3643 2.0573 -1.8758 6 6 3.1923 0.8942 -2.3409 7 6 3.7891 2.2040 -2.8869 8 7 3.3703 2.8104 -1.6083 9 6 3.7862 3.8908 -0.8767 10 1 3.3583 4.0809 0.0964 11 6 4.7578 4.7413 -1.3861 12 7 5.2789 4.5098 -2.5723 13 14 5.3257 6.2146 -0.3879 14 1 6.4734 5.8199 0.4679 15 1 5.7447 7.3033 -1.3068 16 1 4.2105 6.6917 0.4688 17 6 2.1390 -1.1672 -0.0005 18 8 3.3517 -1.1671 -0.0001 19 6 1.3855 -2.4722 -0.0005 20 1 0.4481 -2.4738 0.5556 21 6 2.2082 -3.7627 -0.0017 22 1 1.8759 -4.6101 0.5979 23 6 3.7010 -3.6813 -0.3478 24 6 3.7639 -3.2080 -1.8083 25 6 4.8709 -2.9684 -2.6102 26 6 4.7087 -2.5265 -3.9076 27 6 3.4377 -2.3218 -4.4116 28 6 2.3357 -2.5606 -3.6159 29 6 2.4969 -3.0044 -2.3108 30 6 1.4563 -3.3281 -1.2663 31 1 0.5631 -3.8597 -1.5950 32 1 -0.3633 0.0751 -1.0249 33 1 -0.3633 -0.9252 0.4474 34 1 -0.3634 0.8499 0.5775 35 1 3.1918 1.1143 0.4190 36 1 1.6585 1.9995 0.6031 37 1 2.6221 0.3304 -3.0791 38 1 3.9083 0.2796 -1.7953 39 1 4.8699 2.1707 -3.0243 40 1 3.2608 2.5993 -3.7546 41 1 5.9581 5.1039 -2.9281 42 1 4.2003 -2.9829 0.3238 43 1 4.1555 -4.6686 -0.2663 44 1 5.8641 -3.1282 -2.2171 45 1 5.5730 -2.3409 -4.5280 46 1 3.3073 -1.9765 -5.4266 47 1 1.3431 -2.4009 -4.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085861210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:01 Heat of formation + Delta-G solvation = 76.079577 kcal Electronic energy + Delta-G solvation = -29001.739483 eV Core-core repulsion = 25344.922821 eV Total energy + Delta-G solvation = -3656.816662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15916 -40.35429 -39.30722 -37.58261 -36.29645 -34.23920 -32.52082 -31.47383 -30.09484 -29.84174 -28.56456 -27.33958 -25.61249 -25.22682 -23.94112 -22.93676 -21.92235 -21.17610 -20.82707 -19.53291 -18.70740 -18.25401 -17.18152 -16.95672 -16.76709 -16.66243 -16.12729 -15.82719 -15.71453 -15.44123 -15.02654 -14.67811 -14.29861 -14.14151 -14.03562 -13.75090 -13.72914 -13.55758 -13.33479 -13.16216 -12.98685 -12.86514 -12.62601 -12.56271 -12.48560 -12.26154 -12.09040 -11.82910 -11.66663 -11.59954 -11.44640 -11.24054 -11.03611 -10.86426 -10.32102 -9.57926 -9.54928 -9.26881 -8.88278 -7.90244 -5.23284 0.47671 0.60394 1.42188 1.45577 1.53432 1.67374 2.05096 2.48953 2.68379 3.03509 3.29643 3.38715 3.47125 3.63239 3.74930 3.93233 4.00989 4.05083 4.21234 4.23551 4.25886 4.28722 4.33469 4.41395 4.47575 4.60368 4.66020 4.70704 4.77176 4.80622 4.84800 4.89847 4.96301 5.03801 5.04324 5.07263 5.09118 5.16798 5.21692 5.28103 5.42453 5.50381 5.60482 5.62361 5.69540 5.75096 5.82688 5.93448 6.20491 6.59699 6.90831 7.40955 7.61302 8.58640 9.28059 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.004253 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.375614 B = 6582.028645 C = 7485.526019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.133 3.867 4 C 0.136 3.864 5 H 0.053 0.947 6 C -0.112 4.112 7 C 0.162 3.838 8 N -0.627 5.627 9 C -0.229 4.229 10 H 0.086 0.914 11 C -0.071 4.071 12 N -0.958 5.958 13 Si 0.978 3.022 14 H -0.289 1.289 15 H -0.294 1.294 16 H -0.264 1.264 17 C 0.528 3.472 18 O -0.562 6.562 19 C -0.156 4.156 20 H 0.172 0.828 21 C -0.120 4.120 22 H 0.163 0.837 23 C -0.060 4.060 24 C -0.077 4.077 25 C -0.134 4.134 26 C -0.125 4.125 27 C -0.137 4.137 28 C -0.103 4.103 29 C -0.094 4.094 30 C -0.086 4.086 31 H 0.158 0.842 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.016 0.984 41 H 0.247 0.753 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.128 0.872 46 H 0.136 0.864 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 -20.995 3.406 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.008 3.992 4 C 0.030 3.970 5 H 0.070 0.930 6 C -0.150 4.150 7 C 0.037 3.963 8 N -0.353 5.353 9 C -0.357 4.357 10 H 0.104 0.896 11 C -0.263 4.263 12 N -0.607 5.607 13 Si 0.806 3.194 14 H -0.216 1.216 15 H -0.221 1.221 16 H -0.188 1.188 17 C 0.317 3.683 18 O -0.440 6.440 19 C -0.176 4.176 20 H 0.189 0.811 21 C -0.138 4.138 22 H 0.181 0.819 23 C -0.096 4.096 24 C -0.077 4.077 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.155 4.155 28 C -0.121 4.121 29 C -0.094 4.094 30 C -0.104 4.104 31 H 0.176 0.824 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.132 0.868 45 H 0.146 0.854 46 H 0.153 0.847 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.138 -20.709 3.487 24.771 hybrid contribution 1.052 1.640 -0.118 1.953 sum -12.085 -19.068 3.369 22.825 Atomic orbital electron populations 1.22092 0.77101 1.04851 1.02851 1.47816 1.08377 1.04725 1.73143 1.21280 0.96739 0.84773 0.96364 1.22638 0.92104 0.87370 0.94935 0.92973 1.23297 0.98422 0.95201 0.98091 1.21985 0.97072 0.89086 0.88197 1.46284 1.36600 1.30556 1.21905 1.19415 1.17048 1.00752 0.98465 0.89614 1.25666 1.00536 1.02109 0.98025 1.70046 1.31484 1.40089 1.19076 0.85089 0.78304 0.78670 0.77362 1.21624 1.22063 1.18814 1.20400 0.87358 0.85344 0.75177 1.90680 1.15712 1.87239 1.50403 1.22573 1.02943 0.88512 1.03569 0.81070 1.23100 0.92557 0.97291 1.00863 0.81908 1.20926 0.96166 1.01127 0.91395 1.21180 0.93465 0.97542 0.95543 1.20811 0.98381 1.01453 0.94521 1.21220 0.98232 0.99236 0.95643 1.21205 0.92458 1.01037 1.00769 1.20862 0.99515 0.98751 0.92997 1.19858 0.94130 1.01004 0.94439 1.21556 1.00324 1.02021 0.86524 0.82435 0.92138 0.87708 0.90494 0.92930 0.90584 0.92092 0.91915 0.95583 0.96609 0.94437 0.90165 0.89345 0.86808 0.85397 0.84656 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.21 10.37 127.77 1.33 2.54 16 2 N -0.61 -16.83 2.80 -846.76 -2.37 -19.19 16 3 C 0.13 4.94 5.44 86.38 0.47 5.41 16 4 C 0.14 5.82 4.57 45.10 0.21 6.03 16 5 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 6 C -0.11 -4.92 7.29 31.25 0.23 -4.69 16 7 C 0.16 8.66 7.39 86.48 0.64 9.30 16 8 N -0.63 -34.25 3.57 -694.19 -2.48 -36.73 16 9 C -0.23 -13.37 10.51 84.03 0.88 -12.48 16 10 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 11 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 12 N -0.96 -61.29 11.53 21.65 0.25 -61.04 16 13 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 14 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 15 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 16 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 17 C 0.53 15.23 6.37 87.66 0.56 15.79 16 18 O -0.56 -21.44 10.53 -3.01 -0.03 -21.47 16 19 C -0.16 -2.79 5.26 -11.54 -0.06 -2.85 16 20 H 0.17 1.62 6.41 -2.39 -0.02 1.61 16 21 C -0.12 -2.05 7.00 -10.49 -0.07 -2.13 16 22 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 23 C -0.06 -1.45 5.89 30.96 0.18 -1.26 16 24 C -0.08 -2.21 4.96 -18.87 -0.09 -2.30 16 25 C -0.13 -4.07 10.04 22.35 0.22 -3.84 16 26 C -0.13 -3.62 10.05 22.22 0.22 -3.39 16 27 C -0.14 -3.64 10.04 22.22 0.22 -3.41 16 28 C -0.10 -2.58 10.04 22.35 0.22 -2.36 16 29 C -0.09 -2.38 5.27 -19.75 -0.10 -2.48 16 30 C -0.09 -1.50 6.85 -11.34 -0.08 -1.58 16 31 H 0.16 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 0.99 5.83 -2.38 -0.01 0.98 16 34 H 0.08 1.17 8.00 -2.39 -0.02 1.15 16 35 H 0.05 2.37 7.25 -2.39 -0.02 2.36 16 36 H 0.08 2.61 8.01 -2.38 -0.02 2.59 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 3.07 6.65 -2.39 -0.02 3.06 16 39 H 0.03 1.56 7.41 -2.39 -0.02 1.54 16 40 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.08 2.46 6.26 -2.38 -0.01 2.44 16 43 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 45 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 46 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 47 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -79.77 373.33 3.81 -75.96 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.96 Total: 20.23 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 5.44 Total: -7.49 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -4.60 Total: -116.96 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.03 Total: -21.47 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -79.77 3.81 -75.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085861210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.043 kcal (2) G-P(sol) polarization free energy of solvation -79.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds