Wall clock time and date at job start Tue Mar 31 2020 14:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 120.00108 * 2 1 4 4 C 1.52998 * 109.47238 * 95.01132 * 3 2 1 5 5 H 1.09004 * 112.73773 * 43.47364 * 4 3 2 6 6 C 1.53492 * 113.47018 * 272.66236 * 4 3 2 7 7 C 1.53500 * 83.34543 * 219.15158 * 6 4 3 8 8 N 1.47057 * 113.47003 * 174.21991 * 4 3 2 9 9 C 1.36943 * 136.05868 * 321.94162 * 8 4 3 10 10 H 1.07998 * 119.99523 * 34.07966 * 9 8 4 11 11 C 1.38812 * 120.00107 * 214.07932 * 9 8 4 12 12 N 1.31616 * 120.00157 * 191.20345 * 11 9 8 13 13 Si 1.86805 * 119.99836 * 11.20410 * 11 9 8 14 14 H 1.48492 * 109.47252 * 84.26473 * 13 11 9 15 15 H 1.48498 * 109.46713 * 204.26886 * 13 11 9 16 16 H 1.48503 * 109.47104 * 324.26592 * 13 11 9 17 17 C 1.34772 * 120.00016 * 179.97438 * 2 1 3 18 18 O 1.21286 * 120.00038 * 174.70246 * 17 2 1 19 19 C 1.50704 * 120.00231 * 354.70943 * 17 2 1 20 20 H 1.08996 * 115.53431 * 325.58228 * 19 17 2 21 21 C 1.52956 * 117.48176 * 111.17820 * 19 17 2 22 22 H 1.08992 * 118.97492 * 356.70097 * 21 19 17 23 23 C 1.50953 * 118.98094 * 201.35858 * 21 19 17 24 24 C 1.38788 * 129.72966 * 115.01670 * 23 21 19 25 25 C 1.38019 * 120.31593 * 179.97438 * 24 23 21 26 26 C 1.38250 * 119.88633 * 0.02562 * 25 24 23 27 27 C 1.38017 * 119.87646 * 0.02562 * 26 25 24 28 28 C 1.37805 * 110.47448 * 294.98664 * 23 21 19 29 29 C 1.50967 * 110.46747 * 0.08682 * 28 23 21 30 30 C 1.53038 * 117.48268 * 179.97438 * 19 17 2 31 31 H 1.09002 * 119.41157 * 5.42824 * 30 19 17 32 32 H 1.08997 * 109.47190 * 270.00359 * 1 2 3 33 33 H 1.08998 * 109.47327 * 150.00186 * 1 2 3 34 34 H 1.09000 * 109.46769 * 30.00041 * 1 2 3 35 35 H 1.08994 * 109.46991 * 215.01569 * 3 2 1 36 36 H 1.09002 * 109.46924 * 335.01518 * 3 2 1 37 37 H 1.09007 * 114.20519 * 332.73570 * 6 4 3 38 38 H 1.08999 * 114.21297 * 105.56551 * 6 4 3 39 39 H 1.09004 * 113.46167 * 271.28425 * 7 6 4 40 40 H 1.08994 * 113.47242 * 140.84862 * 7 6 4 41 41 H 0.96998 * 119.99971 * 179.97438 * 12 11 9 42 42 H 1.08000 * 119.84355 * 359.93732 * 24 23 21 43 43 H 1.07999 * 120.05581 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.06078 * 179.97438 * 26 25 24 45 45 H 1.07998 * 119.84180 * 179.97438 * 27 26 25 46 46 H 1.08996 * 109.92108 * 240.93811 * 29 28 23 47 47 H 1.09002 * 109.92073 * 119.63346 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5617 1.6474 1.4370 5 1 2.9332 0.8009 2.0145 6 6 1.4647 2.4449 2.1557 7 6 2.6560 3.2262 2.7272 8 7 3.4171 2.8400 1.5295 9 6 4.4620 3.3619 0.8145 10 1 4.5000 3.2343 -0.2572 11 6 5.4722 4.0549 1.4674 12 7 6.3540 4.7422 0.7727 13 14 5.5801 4.0121 3.3318 14 1 6.3146 2.7937 3.7573 15 1 6.3004 5.2180 3.8136 16 1 4.2110 3.9907 3.9065 17 6 2.1389 -1.1672 0.0005 18 8 3.3478 -1.1695 -0.0965 19 6 1.3902 -2.4695 0.1214 20 1 0.5001 -2.4431 0.7499 21 6 1.3622 -3.3840 -1.1043 22 1 1.8307 -3.0437 -2.0277 23 6 0.2705 -4.4201 -1.2190 24 6 -0.7578 -4.5266 -2.1451 25 6 -1.6604 -5.5678 -2.0672 26 6 -1.5410 -6.5093 -1.0620 27 6 -0.5198 -6.4044 -0.1395 28 6 0.3899 -5.3591 -0.2174 29 6 1.5720 -5.0410 0.6661 30 6 2.2126 -3.7601 0.1152 31 1 3.3011 -3.7012 0.1150 32 1 -0.3633 0.0001 1.0276 33 1 -0.3634 -0.8900 -0.5138 34 1 -0.3633 0.8900 -0.5138 35 1 3.1080 1.1626 -0.5896 36 1 1.5725 2.0492 -0.4341 37 1 0.8265 3.0267 1.4905 38 1 0.9087 1.8719 2.8977 39 1 3.0521 2.8005 3.6492 40 1 2.4767 4.2988 2.8006 41 1 7.0596 5.2267 1.2289 42 1 -0.8524 -3.7909 -2.9301 43 1 -2.4592 -5.6464 -2.7899 44 1 -2.2460 -7.3250 -0.9982 45 1 -0.4272 -7.1400 0.6458 46 1 2.2910 -5.8596 0.6333 47 1 1.2369 -4.8782 1.6905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085861211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:05 Heat of formation + Delta-G solvation = 95.402258 kcal Electronic energy + Delta-G solvation = -27172.149558 eV Core-core repulsion = 23516.170790 eV Total energy + Delta-G solvation = -3655.978768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26025 -39.58130 -38.30746 -36.97392 -35.21342 -32.27647 -32.08102 -30.89727 -29.01340 -28.34652 -27.96894 -26.45114 -24.65906 -23.22031 -22.86402 -22.08061 -20.92701 -20.62843 -19.44228 -18.89381 -17.33879 -16.71077 -16.49820 -16.13301 -15.66861 -15.39706 -15.26614 -15.03693 -14.54225 -13.91780 -13.78832 -13.69663 -13.31295 -13.15701 -13.02289 -12.87450 -12.78692 -12.69594 -12.49695 -12.20329 -11.96826 -11.74705 -11.64202 -11.60089 -11.14827 -10.98412 -10.85908 -10.77754 -10.26046 -10.19101 -10.12974 -9.82527 -9.65811 -9.28319 -9.06866 -8.78740 -8.62862 -8.26655 -6.88403 -5.92183 -3.37761 0.97460 1.06261 2.52632 3.03499 3.34401 3.41404 3.48827 3.50428 3.65920 4.07052 4.27300 4.55871 4.58317 4.60044 4.72165 4.73939 4.77769 4.89228 4.91390 5.08812 5.15461 5.19534 5.27358 5.31173 5.32313 5.42121 5.47406 5.48384 5.63989 5.67176 5.70658 5.73370 5.78886 5.86853 6.01105 6.02253 6.13055 6.18202 6.19604 6.32028 6.35774 6.40397 6.55428 6.61244 6.67020 6.70502 7.12104 7.48727 7.59246 8.34079 8.39968 8.74805 9.66176 10.45005 11.24300 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.002535 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.272169 B =11042.466571 C =11260.797134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.607 5.607 3 C 0.119 3.881 4 C 0.126 3.874 5 H 0.046 0.954 6 C -0.157 4.157 7 C 0.111 3.889 8 N -0.613 5.613 9 C -0.227 4.227 10 H 0.090 0.910 11 C 0.029 3.971 12 N -0.913 5.913 13 Si 0.864 3.136 14 H -0.286 1.286 15 H -0.298 1.298 16 H -0.245 1.245 17 C 0.540 3.460 18 O -0.526 6.526 19 C -0.144 4.144 20 H 0.122 0.878 21 C -0.101 4.101 22 H 0.122 0.878 23 C -0.065 4.065 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.109 4.109 28 C -0.091 4.091 29 C -0.057 4.057 30 C -0.124 4.124 31 H 0.136 0.864 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.040 0.960 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.090 0.910 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.166 -21.442 -2.211 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.340 5.340 3 C -0.004 4.004 4 C 0.019 3.981 5 H 0.064 0.936 6 C -0.196 4.196 7 C -0.014 4.014 8 N -0.341 5.341 9 C -0.353 4.353 10 H 0.107 0.893 11 C -0.170 4.170 12 N -0.556 5.556 13 Si 0.693 3.307 14 H -0.213 1.213 15 H -0.225 1.225 16 H -0.170 1.170 17 C 0.327 3.673 18 O -0.401 6.401 19 C -0.166 4.166 20 H 0.139 0.861 21 C -0.119 4.119 22 H 0.140 0.860 23 C -0.065 4.065 24 C -0.117 4.117 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.127 4.127 28 C -0.091 4.091 29 C -0.093 4.093 30 C -0.142 4.142 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.108 0.892 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.149 -21.201 -2.405 28.670 hybrid contribution 0.208 0.064 1.074 1.096 sum -18.941 -21.137 -1.331 28.413 Atomic orbital electron populations 1.21782 0.79829 1.02871 1.01751 1.47759 1.06829 1.06245 1.73211 1.21796 0.97190 0.82388 0.99019 1.22532 0.90395 0.91744 0.93468 0.93647 1.23611 0.96341 0.99615 0.99985 1.22701 0.89152 0.98097 0.91497 1.46066 1.38100 1.19809 1.30088 1.18514 0.96195 1.29817 0.90822 0.89271 1.25437 0.94734 0.98838 0.98040 1.69749 1.17231 1.33344 1.35305 0.87163 0.79490 0.76768 0.87241 1.21263 1.22470 1.17014 1.19399 0.87215 0.83989 0.76685 1.90763 1.13875 1.86926 1.48576 1.22243 1.02206 0.90012 1.02096 0.86057 1.21384 0.97906 0.98825 0.93825 0.85980 1.19676 0.95350 0.95548 0.95935 1.20732 0.93927 0.98414 0.98612 1.21036 0.99298 0.94888 0.98849 1.21040 0.98106 0.99245 0.95206 1.20650 0.94717 0.97676 0.99653 1.20536 0.96994 0.95259 0.96277 1.20357 0.94359 0.96032 0.98577 1.22929 0.99453 0.91794 1.00056 0.84608 0.92673 0.91363 0.90886 0.89626 0.90259 0.90114 0.92413 0.94228 0.93316 0.92658 0.86007 0.85791 0.85841 0.86096 0.89179 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 9.97 59.85 0.60 1.40 16 2 N -0.61 -8.86 2.88 -181.57 -0.52 -9.38 16 3 C 0.12 2.15 5.39 -4.04 -0.02 2.12 16 4 C 0.13 2.54 4.28 -72.40 -0.31 2.23 16 5 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 6 C -0.16 -2.66 8.02 -26.22 -0.21 -2.87 16 7 C 0.11 2.35 5.53 -8.50 -0.05 2.30 16 8 N -0.61 -15.15 3.12 -177.00 -0.55 -15.70 16 9 C -0.23 -6.60 10.98 -15.06 -0.17 -6.77 16 10 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 11 C 0.03 0.88 5.50 -17.43 -0.10 0.79 16 12 N -0.91 -28.93 13.97 55.49 0.78 -28.15 16 13 Si 0.86 22.49 27.28 -169.99 -4.64 17.85 16 14 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 15 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 16 H -0.25 -5.80 4.04 56.52 0.23 -5.58 16 17 C 0.54 8.53 7.41 -10.99 -0.08 8.45 16 18 O -0.53 -10.77 15.97 5.55 0.09 -10.68 16 19 C -0.14 -1.69 4.30 -91.77 -0.39 -2.09 16 20 H 0.12 1.23 7.49 -51.93 -0.39 0.84 16 21 C -0.10 -1.09 6.58 -91.48 -0.60 -1.69 16 22 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 23 C -0.07 -0.64 5.94 -104.45 -0.62 -1.26 16 24 C -0.10 -0.85 10.04 -39.46 -0.40 -1.25 16 25 C -0.12 -0.91 10.05 -39.66 -0.40 -1.31 16 26 C -0.12 -0.85 10.05 -39.66 -0.40 -1.25 16 27 C -0.11 -0.86 10.04 -39.46 -0.40 -1.26 16 28 C -0.09 -0.84 6.11 -104.45 -0.64 -1.48 16 29 C -0.06 -0.49 6.57 -27.52 -0.18 -0.68 16 30 C -0.12 -1.38 6.55 -90.18 -0.59 -1.97 16 31 H 0.14 1.68 7.80 -51.93 -0.40 1.28 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.57 6.89 -51.93 -0.36 0.21 16 34 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 35 H 0.09 1.86 7.51 -51.93 -0.39 1.47 16 36 H 0.08 1.31 7.56 -51.93 -0.39 0.92 16 37 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.86 6.50 -51.93 -0.34 0.52 16 40 H 0.05 1.04 8.00 -51.93 -0.42 0.62 16 41 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -34.97 379.77 -11.54 -46.52 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.47 Total: 0.40 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -4.95 Total: -6.58 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.30 Total: -53.23 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.64 Total: 17.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.97 -11.54 -46.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085861211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.919 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds