Wall clock time and date at job start Tue Mar 31 2020 14:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 120.00108 * 2 1 4 4 C 1.52998 * 109.47238 * 95.01132 * 3 2 1 5 5 H 1.09004 * 112.73773 * 43.47364 * 4 3 2 6 6 C 1.53492 * 113.47018 * 272.66236 * 4 3 2 7 7 C 1.53500 * 83.34543 * 219.15158 * 6 4 3 8 8 N 1.47057 * 113.47003 * 174.21991 * 4 3 2 9 9 C 1.36943 * 136.05868 * 321.94162 * 8 4 3 10 10 H 1.07998 * 119.99523 * 34.07966 * 9 8 4 11 11 C 1.38812 * 120.00107 * 214.07932 * 9 8 4 12 12 N 1.31616 * 120.00157 * 191.20345 * 11 9 8 13 13 Si 1.86805 * 119.99836 * 11.20410 * 11 9 8 14 14 H 1.48492 * 109.47252 * 84.26473 * 13 11 9 15 15 H 1.48498 * 109.46713 * 204.26886 * 13 11 9 16 16 H 1.48503 * 109.47104 * 324.26592 * 13 11 9 17 17 C 1.34772 * 120.00016 * 179.97438 * 2 1 3 18 18 O 1.21286 * 120.00038 * 174.70246 * 17 2 1 19 19 C 1.50704 * 120.00231 * 354.70943 * 17 2 1 20 20 H 1.08996 * 115.53431 * 325.58228 * 19 17 2 21 21 C 1.52956 * 117.48176 * 111.17820 * 19 17 2 22 22 H 1.08992 * 118.97492 * 356.70097 * 21 19 17 23 23 C 1.50953 * 118.98094 * 201.35858 * 21 19 17 24 24 C 1.38788 * 129.72966 * 115.01670 * 23 21 19 25 25 C 1.38019 * 120.31593 * 179.97438 * 24 23 21 26 26 C 1.38250 * 119.88633 * 0.02562 * 25 24 23 27 27 C 1.38017 * 119.87646 * 0.02562 * 26 25 24 28 28 C 1.37805 * 110.47448 * 294.98664 * 23 21 19 29 29 C 1.50967 * 110.46747 * 0.08682 * 28 23 21 30 30 C 1.53038 * 117.48268 * 179.97438 * 19 17 2 31 31 H 1.09002 * 119.41157 * 5.42824 * 30 19 17 32 32 H 1.08997 * 109.47190 * 270.00359 * 1 2 3 33 33 H 1.08998 * 109.47327 * 150.00186 * 1 2 3 34 34 H 1.09000 * 109.46769 * 30.00041 * 1 2 3 35 35 H 1.08994 * 109.46991 * 215.01569 * 3 2 1 36 36 H 1.09002 * 109.46924 * 335.01518 * 3 2 1 37 37 H 1.09007 * 114.20519 * 332.73570 * 6 4 3 38 38 H 1.08999 * 114.21297 * 105.56551 * 6 4 3 39 39 H 1.09004 * 113.46167 * 271.28425 * 7 6 4 40 40 H 1.08994 * 113.47242 * 140.84862 * 7 6 4 41 41 H 0.96998 * 119.99971 * 179.97438 * 12 11 9 42 42 H 1.08000 * 119.84355 * 359.93732 * 24 23 21 43 43 H 1.07999 * 120.05581 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.06078 * 179.97438 * 26 25 24 45 45 H 1.07998 * 119.84180 * 179.97438 * 27 26 25 46 46 H 1.08996 * 109.92108 * 240.93811 * 29 28 23 47 47 H 1.09002 * 109.92073 * 119.63346 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5617 1.6474 1.4370 5 1 2.9332 0.8009 2.0145 6 6 1.4647 2.4449 2.1557 7 6 2.6560 3.2262 2.7272 8 7 3.4171 2.8400 1.5295 9 6 4.4620 3.3619 0.8145 10 1 4.5000 3.2343 -0.2572 11 6 5.4722 4.0549 1.4674 12 7 6.3540 4.7422 0.7727 13 14 5.5801 4.0121 3.3318 14 1 6.3146 2.7937 3.7573 15 1 6.3004 5.2180 3.8136 16 1 4.2110 3.9907 3.9065 17 6 2.1389 -1.1672 0.0005 18 8 3.3478 -1.1695 -0.0965 19 6 1.3902 -2.4695 0.1214 20 1 0.5001 -2.4431 0.7499 21 6 1.3622 -3.3840 -1.1043 22 1 1.8307 -3.0437 -2.0277 23 6 0.2705 -4.4201 -1.2190 24 6 -0.7578 -4.5266 -2.1451 25 6 -1.6604 -5.5678 -2.0672 26 6 -1.5410 -6.5093 -1.0620 27 6 -0.5198 -6.4044 -0.1395 28 6 0.3899 -5.3591 -0.2174 29 6 1.5720 -5.0410 0.6661 30 6 2.2126 -3.7601 0.1152 31 1 3.3011 -3.7012 0.1150 32 1 -0.3633 0.0001 1.0276 33 1 -0.3634 -0.8900 -0.5138 34 1 -0.3633 0.8900 -0.5138 35 1 3.1080 1.1626 -0.5896 36 1 1.5725 2.0492 -0.4341 37 1 0.8265 3.0267 1.4905 38 1 0.9087 1.8719 2.8977 39 1 3.0521 2.8005 3.6492 40 1 2.4767 4.2988 2.8006 41 1 7.0596 5.2267 1.2289 42 1 -0.8524 -3.7909 -2.9301 43 1 -2.4592 -5.6464 -2.7899 44 1 -2.2460 -7.3250 -0.9982 45 1 -0.4272 -7.1400 0.6458 46 1 2.2910 -5.8596 0.6333 47 1 1.2369 -4.8782 1.6905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085861211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:04 Heat of formation + Delta-G solvation = 74.962024 kcal Electronic energy + Delta-G solvation = -27173.035913 eV Core-core repulsion = 23516.170790 eV Total energy + Delta-G solvation = -3656.865123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11513 -40.80200 -39.80364 -37.79560 -36.52041 -34.48464 -32.78088 -31.60980 -30.58053 -30.04595 -28.67639 -27.46390 -25.81058 -25.09755 -24.00751 -22.94120 -21.73006 -21.41749 -21.17582 -20.04205 -18.85222 -18.24505 -17.60726 -17.22324 -17.12131 -16.57350 -16.19335 -16.01698 -15.70698 -15.34865 -15.02283 -14.82963 -14.52197 -14.42977 -14.25476 -13.94677 -13.81288 -13.64378 -13.60943 -13.43851 -13.39296 -13.12909 -12.89663 -12.75630 -12.42954 -12.23451 -12.05261 -11.85567 -11.76277 -11.74501 -11.64330 -11.17405 -11.07756 -10.94270 -10.64919 -9.70084 -9.64346 -9.41978 -8.90412 -8.22114 -5.64678 0.34357 0.48396 1.31654 1.35495 1.38635 1.43583 1.87900 2.40448 2.52793 2.92505 3.07653 3.10910 3.23754 3.48980 3.67699 3.70406 3.84003 3.87656 4.09497 4.16114 4.22242 4.22758 4.26821 4.35370 4.37365 4.44863 4.60367 4.62387 4.67014 4.74190 4.79655 4.82205 4.86317 4.89126 4.93628 4.95855 4.97599 5.04847 5.05169 5.12034 5.26878 5.34772 5.56217 5.60043 5.62459 5.64167 5.73417 6.11092 6.14459 6.38157 6.51733 7.13271 7.38545 8.33654 8.99096 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.002535 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.272169 B =11042.466571 C =11260.797134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.602 5.602 3 C 0.130 3.870 4 C 0.122 3.878 5 H 0.028 0.972 6 C -0.117 4.117 7 C 0.097 3.903 8 N -0.642 5.642 9 C -0.217 4.217 10 H 0.048 0.952 11 C -0.036 4.036 12 N -0.964 5.964 13 Si 0.924 3.076 14 H -0.298 1.298 15 H -0.299 1.299 16 H -0.203 1.203 17 C 0.532 3.468 18 O -0.588 6.588 19 C -0.137 4.137 20 H 0.147 0.853 21 C -0.092 4.092 22 H 0.107 0.893 23 C -0.083 4.083 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.114 4.114 28 C -0.100 4.100 29 C -0.049 4.049 30 C -0.133 4.133 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.033 0.967 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.262 0.738 42 H 0.129 0.871 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.140 0.860 46 H 0.100 0.900 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.936 -23.469 -0.315 34.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.334 5.334 3 C 0.006 3.994 4 C 0.015 3.985 5 H 0.046 0.954 6 C -0.154 4.154 7 C -0.027 4.027 8 N -0.371 5.371 9 C -0.346 4.346 10 H 0.066 0.934 11 C -0.231 4.231 12 N -0.610 5.610 13 Si 0.751 3.249 14 H -0.226 1.226 15 H -0.227 1.227 16 H -0.126 1.126 17 C 0.321 3.679 18 O -0.468 6.468 19 C -0.158 4.158 20 H 0.165 0.835 21 C -0.111 4.111 22 H 0.125 0.875 23 C -0.083 4.083 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.132 4.132 28 C -0.100 4.100 29 C -0.085 4.085 30 C -0.152 4.152 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.167 0.833 45 H 0.158 0.842 46 H 0.118 0.882 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.023 -23.245 -0.498 33.432 hybrid contribution 1.617 0.593 0.336 1.755 sum -22.406 -22.652 -0.163 31.861 Atomic orbital electron populations 1.22135 0.76203 1.04669 1.03764 1.47819 1.08842 1.04542 1.72187 1.21443 0.96059 0.84655 0.97210 1.22685 0.90735 0.90257 0.94786 0.95433 1.23432 0.94542 0.97680 0.99764 1.22935 0.90540 0.98996 0.90191 1.46277 1.37400 1.22314 1.31069 1.18332 0.97505 1.28906 0.89838 0.93440 1.26188 0.94750 0.99160 1.03029 1.69901 1.18577 1.35282 1.37234 0.86239 0.81393 0.75793 0.81516 1.22590 1.22658 1.12579 1.20165 0.86754 0.85582 0.75372 1.90736 1.16779 1.87895 1.51409 1.22087 1.02470 0.87814 1.03419 0.83523 1.21308 0.98407 0.98530 0.92846 0.87530 1.19637 0.95799 0.95618 0.97288 1.20935 0.93923 0.99231 0.98582 1.21353 0.99374 0.94264 0.99295 1.21416 0.98037 0.99578 0.94426 1.20929 0.94400 0.97529 1.00372 1.20636 0.97392 0.95768 0.96203 1.20323 0.94488 0.94699 0.99039 1.22955 0.98507 0.92781 1.00942 0.86947 0.90382 0.89533 0.89319 0.94843 0.88380 0.87932 0.88127 0.93821 0.93136 0.92888 0.85300 0.83583 0.83315 0.84183 0.88217 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 9.97 127.77 1.27 2.47 16 2 N -0.60 -17.06 2.88 -846.76 -2.44 -19.50 16 3 C 0.13 4.76 5.39 86.38 0.47 5.23 16 4 C 0.12 4.82 4.28 41.79 0.18 5.00 16 5 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 6 C -0.12 -3.43 8.02 30.93 0.25 -3.19 16 7 C 0.10 3.86 5.53 83.18 0.46 4.32 16 8 N -0.64 -31.80 3.12 -713.91 -2.23 -34.03 16 9 C -0.22 -13.24 10.98 84.03 0.92 -12.32 16 10 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 11 C -0.04 -2.26 5.50 84.86 0.47 -1.80 16 12 N -0.96 -64.06 13.97 21.65 0.30 -63.76 16 13 Si 0.92 47.19 27.28 68.60 1.87 49.06 16 14 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 15 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 16 H -0.20 -8.90 4.04 99.48 0.40 -8.49 16 17 C 0.53 17.20 7.41 87.66 0.65 17.85 16 18 O -0.59 -25.92 15.97 -3.05 -0.05 -25.97 16 19 C -0.14 -3.12 4.30 -11.54 -0.05 -3.17 16 20 H 0.15 2.57 7.49 -2.39 -0.02 2.55 16 21 C -0.09 -1.99 6.58 -11.35 -0.07 -2.07 16 22 H 0.11 2.57 8.14 -2.39 -0.02 2.56 16 23 C -0.08 -1.51 5.94 -19.76 -0.12 -1.63 16 24 C -0.11 -1.65 10.04 22.35 0.22 -1.42 16 25 C -0.13 -1.47 10.05 22.22 0.22 -1.24 16 26 C -0.12 -1.26 10.05 22.22 0.22 -1.04 16 27 C -0.11 -1.45 10.04 22.35 0.22 -1.23 16 28 C -0.10 -1.63 6.11 -19.75 -0.12 -1.75 16 29 C -0.05 -0.78 6.57 30.08 0.20 -0.59 16 30 C -0.13 -2.99 6.55 -10.51 -0.07 -3.06 16 31 H 0.11 3.04 7.80 -2.39 -0.02 3.02 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.13 6.89 -2.39 -0.02 1.12 16 34 H 0.09 1.21 7.86 -2.39 -0.02 1.19 16 35 H 0.03 1.56 7.51 -2.39 -0.02 1.54 16 36 H 0.10 3.15 7.56 -2.39 -0.02 3.14 16 37 H 0.10 2.66 7.93 -2.38 -0.02 2.64 16 38 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.04 1.72 6.50 -2.38 -0.02 1.71 16 40 H 0.05 1.99 8.00 -2.39 -0.02 1.97 16 41 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 42 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 43 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 45 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -83.39 379.77 3.43 -79.96 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.65 Total: 13.88 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.33 Total: 0.36 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -4.37 Total: -117.30 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.87 Total: 49.06 kcal Total: -83.39 3.43 -79.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085861211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.924 kcal (2) G-P(sol) polarization free energy of solvation -83.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds