Wall clock time and date at job start Tue Mar 31 2020 14:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99692 * 2 1 4 4 C 1.53005 * 109.46950 * 275.48108 * 3 2 1 5 5 H 1.09000 * 112.96695 * 66.18435 * 4 3 2 6 6 C 1.53944 * 113.76840 * 294.50429 * 4 3 2 7 7 C 1.53948 * 86.28880 * 222.09555 * 6 4 3 8 8 N 1.47576 * 86.11926 * 23.60860 * 7 6 4 9 9 C 1.36934 * 134.49480 * 155.36264 * 8 7 6 10 10 H 1.07996 * 120.00362 * 186.35189 * 9 8 7 11 11 C 1.38817 * 120.00091 * 6.35228 * 9 8 7 12 12 N 1.31621 * 119.99575 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00197 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.46883 * 59.99999 * 13 11 9 15 15 H 1.48499 * 109.46832 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46964 * 299.99746 * 13 11 9 17 17 C 1.34771 * 120.00434 * 179.71981 * 2 1 3 18 18 O 1.21544 * 120.00519 * 185.92526 * 17 2 1 19 19 C 1.47866 * 119.99534 * 5.92835 * 17 2 1 20 20 C 1.39673 * 120.07511 * 32.60968 * 19 17 2 21 21 C 1.38103 * 120.25486 * 180.02562 * 20 19 17 22 22 C 1.37981 * 120.17464 * 0.04338 * 21 20 19 23 23 C 1.39758 * 120.09384 * 359.94342 * 22 21 20 24 24 C 1.39040 * 120.09645 * 359.74846 * 23 22 21 25 25 C 1.47841 * 119.07257 * 180.02562 * 23 22 21 26 26 C 1.32526 * 119.47405 * 18.99872 * 25 23 22 27 27 C 1.50317 * 121.06278 * 0.45179 * 26 25 23 28 28 C 1.50633 * 120.61927 * 179.89352 * 22 21 20 29 29 H 1.09001 * 109.46975 * 89.19133 * 1 2 3 30 30 H 1.09004 * 109.47394 * 209.18873 * 1 2 3 31 31 H 1.08995 * 109.47673 * 329.19028 * 1 2 3 32 32 H 1.09002 * 109.47238 * 35.47876 * 3 2 1 33 33 H 1.09001 * 109.47249 * 155.47910 * 3 2 1 34 34 H 1.09008 * 113.74008 * 336.43548 * 6 4 3 35 35 H 1.08996 * 113.74497 * 107.63831 * 6 4 3 36 36 H 1.09003 * 113.76983 * 137.91118 * 7 6 4 37 37 H 1.08996 * 113.77019 * 269.18928 * 7 6 4 38 38 H 0.97004 * 119.99894 * 179.97438 * 12 11 9 39 39 H 1.08000 * 119.87280 * 0.02588 * 20 19 17 40 40 H 1.07998 * 119.90950 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.23838 * 180.29735 * 24 23 22 42 42 H 1.08002 * 120.26649 * 198.97383 * 25 23 22 43 43 H 1.08005 * 119.46588 * 180.42980 * 26 25 23 44 44 H 1.08996 * 109.22635 * 84.49941 * 27 26 25 45 45 H 1.08996 * 109.22831 * 203.89919 * 27 26 25 46 46 H 1.09003 * 109.40814 * 265.56885 * 28 22 21 47 47 H 1.08997 * 109.41424 * 25.35202 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3330 1.7793 -1.4360 5 1 1.3770 2.0537 -1.8819 6 6 3.2016 0.8805 -2.3346 7 6 3.8084 2.1851 -2.8823 8 7 3.3867 2.7983 -1.6079 9 6 3.8050 3.8789 -0.8781 10 1 3.3854 4.0655 0.0994 11 6 4.7684 4.7344 -1.3946 12 7 5.2794 4.5073 -2.5861 13 14 5.3395 6.2080 -0.3987 14 1 5.9244 5.7418 0.8840 15 1 6.3662 6.9568 -1.1672 16 1 4.1824 7.0964 -0.1214 17 6 2.1389 -1.1671 0.0057 18 8 3.3495 -1.1694 0.1144 19 6 1.4055 -2.4448 -0.1203 20 6 0.2372 -2.5090 -0.8831 21 6 -0.4510 -3.7004 -1.0029 22 6 0.0112 -4.8352 -0.3685 23 6 1.1792 -4.7834 0.3973 24 6 1.8816 -3.5895 0.5178 25 6 1.6544 -6.0129 1.0667 26 6 1.2189 -7.1928 0.6489 27 6 0.2572 -7.3017 -0.5012 28 6 -0.7328 -6.1392 -0.4904 29 1 -0.3633 0.0145 -1.0276 30 1 -0.3634 -0.8972 0.5012 31 1 -0.3634 0.8826 0.5263 32 1 1.6543 2.0018 0.5965 33 1 3.1888 1.1160 0.4265 34 1 3.9117 0.2639 -1.7833 35 1 2.6318 0.3158 -3.0725 36 1 4.8897 2.1454 -3.0141 37 1 3.2878 2.5792 -3.7550 38 1 5.9524 5.1053 -2.9472 39 1 -0.1294 -1.6236 -1.3811 40 1 -1.3535 -3.7438 -1.5944 41 1 2.7870 -3.5480 1.1051 42 1 2.3512 -5.9502 1.8895 43 1 1.5607 -8.0905 1.1426 44 1 0.8147 -7.2890 -1.4377 45 1 -0.2913 -8.2403 -0.4228 46 1 -1.4109 -6.2498 0.3558 47 1 -1.3073 -6.1434 -1.4166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085871274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:48 Heat of formation + Delta-G solvation = 68.127137 kcal Electronic energy + Delta-G solvation = -27261.814762 eV Core-core repulsion = 23604.653256 eV Total energy + Delta-G solvation = -3657.161506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.62499 -39.33631 -37.65532 -36.10931 -35.22639 -32.70690 -32.11445 -30.80713 -29.43270 -28.32316 -27.75614 -26.55583 -24.49624 -23.23404 -22.94028 -22.66396 -21.88651 -19.89957 -18.92388 -18.32878 -17.06449 -16.65179 -16.33246 -16.03543 -15.92132 -15.18686 -14.89846 -14.80293 -14.64424 -14.09550 -13.93318 -13.59316 -13.37650 -13.33756 -13.00975 -12.79041 -12.69743 -12.48486 -12.26434 -12.24279 -11.94567 -11.60675 -11.32474 -11.20984 -10.98266 -10.84641 -10.75944 -10.64533 -10.40382 -10.23859 -9.82925 -9.72058 -9.62235 -9.37593 -8.97753 -8.72508 -8.31651 -8.29518 -6.78936 -5.69798 -3.01527 0.59432 0.97758 2.11423 2.96273 3.15759 3.43969 3.47884 3.49212 3.72226 4.28690 4.33118 4.48472 4.54575 4.64769 4.70916 4.83821 4.94883 5.01615 5.09204 5.15992 5.28602 5.29489 5.40259 5.40917 5.45431 5.52024 5.61886 5.66222 5.67344 5.72919 5.78772 5.90412 5.99737 6.04466 6.06908 6.15414 6.20817 6.36127 6.43832 6.55925 6.59550 6.69039 6.77481 6.82146 6.86155 7.34461 7.51630 7.62667 7.67262 8.05941 8.37678 9.11599 9.78213 10.69620 11.47984 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.002447 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.841523 B =11440.526848 C =11568.981921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.604 5.604 3 C 0.115 3.885 4 C 0.129 3.871 5 H 0.041 0.959 6 C -0.159 4.159 7 C 0.166 3.834 8 N -0.600 5.600 9 C -0.223 4.223 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.910 3.090 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.556 3.444 18 O -0.525 6.525 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.126 4.126 22 C -0.059 4.059 23 C -0.068 4.068 24 C -0.050 4.050 25 C -0.117 4.117 26 C -0.148 4.148 27 C -0.093 4.093 28 C -0.081 4.081 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.026 0.974 38 H 0.254 0.746 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.964 -23.318 4.784 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.337 5.337 3 C -0.008 4.008 4 C 0.021 3.979 5 H 0.059 0.941 6 C -0.198 4.198 7 C 0.041 3.959 8 N -0.326 5.326 9 C -0.351 4.351 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.344 3.656 18 O -0.402 6.402 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.144 4.144 22 C -0.060 4.060 23 C -0.068 4.068 24 C -0.068 4.068 25 C -0.134 4.134 26 C -0.166 4.166 27 C -0.130 4.130 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.134 0.866 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.105 -22.984 4.891 27.935 hybrid contribution 0.179 1.103 0.401 1.187 sum -14.926 -21.881 5.292 27.011 Atomic orbital electron populations 1.22101 0.80222 1.03055 1.01494 1.47666 1.06655 1.06353 1.72981 1.21880 0.97945 0.82135 0.98861 1.22509 0.92962 0.89611 0.92867 0.94143 1.23817 0.99531 0.97645 0.98785 1.22081 0.99310 0.86192 0.88319 1.45960 1.34001 1.30414 1.22246 1.18934 1.18069 1.00459 0.97598 0.90457 1.24807 0.99998 0.98909 0.96690 1.69833 1.31234 1.38889 1.16736 0.86236 0.78105 0.82575 0.79075 1.21083 1.21611 1.21245 1.18279 0.87116 0.83353 0.76880 1.90804 1.13571 1.86950 1.48872 1.19945 0.96824 0.94262 1.01901 1.21786 0.93366 0.98692 0.96890 1.20846 1.00678 0.91945 1.00921 1.20136 0.94780 0.95348 0.95701 1.18777 0.95442 0.93555 0.99033 1.21249 0.98325 0.90251 0.97008 1.21624 1.00454 0.91431 0.99940 1.23127 0.98164 0.97428 0.97854 1.20417 0.96456 0.98357 0.97733 1.20457 0.97304 0.91082 1.02941 0.92359 0.90834 0.91035 0.91360 0.88705 0.89899 0.93926 0.91711 0.95605 0.93650 0.84342 0.85359 0.84812 0.85914 0.86564 0.90505 0.90506 0.90262 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 8.85 59.84 0.53 1.32 16 2 N -0.60 -9.17 2.79 -182.69 -0.51 -9.69 16 3 C 0.11 2.14 5.48 -4.04 -0.02 2.12 16 4 C 0.13 2.72 4.58 -66.86 -0.31 2.41 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.16 -3.40 7.32 -25.80 -0.19 -3.59 16 7 C 0.17 4.21 7.37 -2.98 -0.02 4.18 16 8 N -0.60 -15.92 3.57 -170.73 -0.61 -16.53 16 9 C -0.22 -6.38 10.51 -15.06 -0.16 -6.53 16 10 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.25 11.56 55.49 0.64 -27.61 16 13 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.56 9.17 6.94 -12.32 -0.09 9.09 16 18 O -0.53 -10.81 15.09 5.33 0.08 -10.73 16 19 C -0.13 -1.67 5.24 -104.98 -0.55 -2.22 16 20 C -0.09 -0.94 7.64 -39.10 -0.30 -1.24 16 21 C -0.13 -1.13 9.69 -39.72 -0.38 -1.51 16 22 C -0.06 -0.55 5.68 -104.18 -0.59 -1.15 16 23 C -0.07 -0.73 5.77 -105.10 -0.61 -1.34 16 24 C -0.05 -0.62 9.37 -38.84 -0.36 -0.99 16 25 C -0.12 -1.04 9.90 -37.57 -0.37 -1.42 16 26 C -0.15 -1.08 10.02 -36.41 -0.36 -1.44 16 27 C -0.09 -0.58 6.05 -28.23 -0.17 -0.75 16 28 C -0.08 -0.53 5.95 -28.07 -0.17 -0.70 16 29 H 0.06 0.54 6.75 -51.93 -0.35 0.19 16 30 H 0.07 0.67 5.96 -51.93 -0.31 0.36 16 31 H 0.07 0.69 7.96 -51.93 -0.41 0.27 16 32 H 0.07 1.18 7.98 -51.93 -0.41 0.77 16 33 H 0.09 2.08 7.20 -51.93 -0.37 1.70 16 34 H 0.08 1.91 6.92 -51.92 -0.36 1.55 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.80 7.46 -51.93 -0.39 1.41 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.14 1.29 5.13 -52.49 -0.27 1.02 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 1.70 7.96 -52.48 -0.42 1.29 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -34.62 376.28 -11.04 -45.65 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.06 Total: -0.36 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -4.22 Total: -4.08 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.48 Total: -53.83 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.62 -11.04 -45.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085871274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.782 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds