Wall clock time and date at job start Tue Mar 31 2020 14:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99692 * 2 1 4 4 C 1.53005 * 109.46950 * 275.48108 * 3 2 1 5 5 H 1.09000 * 112.96695 * 66.18435 * 4 3 2 6 6 C 1.53944 * 113.76840 * 294.50429 * 4 3 2 7 7 C 1.53948 * 86.28880 * 222.09555 * 6 4 3 8 8 N 1.47576 * 86.11926 * 23.60860 * 7 6 4 9 9 C 1.36934 * 134.49480 * 155.36264 * 8 7 6 10 10 H 1.07996 * 120.00362 * 186.35189 * 9 8 7 11 11 C 1.38817 * 120.00091 * 6.35228 * 9 8 7 12 12 N 1.31621 * 119.99575 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00197 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.46883 * 59.99999 * 13 11 9 15 15 H 1.48499 * 109.46832 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46964 * 299.99746 * 13 11 9 17 17 C 1.34771 * 120.00434 * 179.71981 * 2 1 3 18 18 O 1.21544 * 120.00519 * 185.92526 * 17 2 1 19 19 C 1.47866 * 119.99534 * 5.92835 * 17 2 1 20 20 C 1.39673 * 120.07511 * 32.60968 * 19 17 2 21 21 C 1.38103 * 120.25486 * 180.02562 * 20 19 17 22 22 C 1.37981 * 120.17464 * 0.04338 * 21 20 19 23 23 C 1.39758 * 120.09384 * 359.94342 * 22 21 20 24 24 C 1.39040 * 120.09645 * 359.74846 * 23 22 21 25 25 C 1.47841 * 119.07257 * 180.02562 * 23 22 21 26 26 C 1.32526 * 119.47405 * 18.99872 * 25 23 22 27 27 C 1.50317 * 121.06278 * 0.45179 * 26 25 23 28 28 C 1.50633 * 120.61927 * 179.89352 * 22 21 20 29 29 H 1.09001 * 109.46975 * 89.19133 * 1 2 3 30 30 H 1.09004 * 109.47394 * 209.18873 * 1 2 3 31 31 H 1.08995 * 109.47673 * 329.19028 * 1 2 3 32 32 H 1.09002 * 109.47238 * 35.47876 * 3 2 1 33 33 H 1.09001 * 109.47249 * 155.47910 * 3 2 1 34 34 H 1.09008 * 113.74008 * 336.43548 * 6 4 3 35 35 H 1.08996 * 113.74497 * 107.63831 * 6 4 3 36 36 H 1.09003 * 113.76983 * 137.91118 * 7 6 4 37 37 H 1.08996 * 113.77019 * 269.18928 * 7 6 4 38 38 H 0.97004 * 119.99894 * 179.97438 * 12 11 9 39 39 H 1.08000 * 119.87280 * 0.02588 * 20 19 17 40 40 H 1.07998 * 119.90950 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.23838 * 180.29735 * 24 23 22 42 42 H 1.08002 * 120.26649 * 198.97383 * 25 23 22 43 43 H 1.08005 * 119.46588 * 180.42980 * 26 25 23 44 44 H 1.08996 * 109.22635 * 84.49941 * 27 26 25 45 45 H 1.08996 * 109.22831 * 203.89919 * 27 26 25 46 46 H 1.09003 * 109.40814 * 265.56885 * 28 22 21 47 47 H 1.08997 * 109.41424 * 25.35202 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3330 1.7793 -1.4360 5 1 1.3770 2.0537 -1.8819 6 6 3.2016 0.8805 -2.3346 7 6 3.8084 2.1851 -2.8823 8 7 3.3867 2.7983 -1.6079 9 6 3.8050 3.8789 -0.8781 10 1 3.3854 4.0655 0.0994 11 6 4.7684 4.7344 -1.3946 12 7 5.2794 4.5073 -2.5861 13 14 5.3395 6.2080 -0.3987 14 1 5.9244 5.7418 0.8840 15 1 6.3662 6.9568 -1.1672 16 1 4.1824 7.0964 -0.1214 17 6 2.1389 -1.1671 0.0057 18 8 3.3495 -1.1694 0.1144 19 6 1.4055 -2.4448 -0.1203 20 6 0.2372 -2.5090 -0.8831 21 6 -0.4510 -3.7004 -1.0029 22 6 0.0112 -4.8352 -0.3685 23 6 1.1792 -4.7834 0.3973 24 6 1.8816 -3.5895 0.5178 25 6 1.6544 -6.0129 1.0667 26 6 1.2189 -7.1928 0.6489 27 6 0.2572 -7.3017 -0.5012 28 6 -0.7328 -6.1392 -0.4904 29 1 -0.3633 0.0145 -1.0276 30 1 -0.3634 -0.8972 0.5012 31 1 -0.3634 0.8826 0.5263 32 1 1.6543 2.0018 0.5965 33 1 3.1888 1.1160 0.4265 34 1 3.9117 0.2639 -1.7833 35 1 2.6318 0.3158 -3.0725 36 1 4.8897 2.1454 -3.0141 37 1 3.2878 2.5792 -3.7550 38 1 5.9524 5.1053 -2.9472 39 1 -0.1294 -1.6236 -1.3811 40 1 -1.3535 -3.7438 -1.5944 41 1 2.7870 -3.5480 1.1051 42 1 2.3512 -5.9502 1.8895 43 1 1.5607 -8.0905 1.1426 44 1 0.8147 -7.2890 -1.4377 45 1 -0.2913 -8.2403 -0.4228 46 1 -1.4109 -6.2498 0.3558 47 1 -1.3073 -6.1434 -1.4166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085871274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:48 Heat of formation + Delta-G solvation = 48.554332 kcal Electronic energy + Delta-G solvation = -27262.663502 eV Core-core repulsion = 23604.653256 eV Total energy + Delta-G solvation = -3658.010246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63930 -40.41409 -39.36952 -36.95762 -36.44959 -34.24481 -33.39664 -31.74325 -30.12910 -29.86910 -29.60694 -27.61639 -25.53466 -25.24535 -23.91047 -23.68312 -22.85243 -21.10650 -20.70890 -19.22750 -18.65585 -17.89490 -17.48426 -17.21395 -16.83578 -16.61823 -16.33585 -15.80495 -15.68641 -15.53487 -15.11161 -14.97375 -14.51832 -14.20859 -14.11056 -13.88826 -13.72863 -13.59702 -13.39708 -13.34732 -12.99291 -12.93387 -12.88450 -12.61011 -12.52125 -12.35201 -12.28285 -11.87218 -11.82690 -11.62087 -11.39749 -11.27665 -11.01806 -10.85600 -10.78952 -9.84739 -9.62829 -9.00550 -8.89828 -7.90557 -5.23653 -0.18444 0.14659 1.40319 1.43065 1.47748 1.53250 1.86378 1.94163 2.48927 2.86877 3.28090 3.37397 3.53691 3.70097 3.77933 3.87980 3.91852 4.11976 4.17006 4.19187 4.26713 4.30382 4.36474 4.43975 4.44810 4.52743 4.64290 4.69688 4.76001 4.78608 4.82444 4.90567 4.97831 4.98500 5.03170 5.06416 5.11044 5.19688 5.21299 5.28643 5.34287 5.43625 5.49178 5.53678 5.70731 5.74273 5.89266 5.93090 5.97695 6.39083 6.90821 7.13582 7.61056 8.57772 9.27704 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.002447 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.841523 B =11440.526848 C =11568.981921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.600 5.600 3 C 0.128 3.872 4 C 0.138 3.862 5 H 0.066 0.934 6 C -0.135 4.135 7 C 0.162 3.838 8 N -0.630 5.630 9 C -0.229 4.229 10 H 0.087 0.913 11 C -0.073 4.073 12 N -0.958 5.958 13 Si 0.979 3.021 14 H -0.279 1.279 15 H -0.296 1.296 16 H -0.271 1.271 17 C 0.551 3.449 18 O -0.582 6.582 19 C -0.146 4.146 20 C -0.087 4.087 21 C -0.118 4.118 22 C -0.060 4.060 23 C -0.074 4.074 24 C -0.073 4.073 25 C -0.150 4.150 26 C -0.129 4.129 27 C -0.098 4.098 28 C -0.080 4.080 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.247 0.753 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.074 0.926 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.952 -25.214 4.817 32.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.331 5.331 3 C 0.004 3.996 4 C 0.031 3.969 5 H 0.084 0.916 6 C -0.173 4.173 7 C 0.037 3.963 8 N -0.356 5.356 9 C -0.358 4.358 10 H 0.105 0.895 11 C -0.265 4.265 12 N -0.607 5.607 13 Si 0.807 3.193 14 H -0.205 1.205 15 H -0.222 1.222 16 H -0.197 1.197 17 C 0.341 3.659 18 O -0.463 6.463 19 C -0.149 4.149 20 C -0.105 4.105 21 C -0.135 4.135 22 C -0.060 4.060 23 C -0.074 4.074 24 C -0.092 4.092 25 C -0.168 4.168 26 C -0.147 4.147 27 C -0.135 4.135 28 C -0.117 4.117 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.173 0.827 40 H 0.183 0.817 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.153 0.847 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.109 0.891 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.173 -24.906 4.947 31.818 hybrid contribution 1.349 1.496 0.400 2.054 sum -17.824 -23.410 5.347 29.905 Atomic orbital electron populations 1.22442 0.76842 1.04694 1.03450 1.47682 1.08549 1.04615 1.72278 1.21443 0.96910 0.84132 0.97118 1.22658 0.92562 0.87328 0.94332 0.91629 1.23517 0.98994 0.95964 0.98865 1.22001 0.97278 0.88623 0.88437 1.46300 1.36044 1.30782 1.22507 1.19376 1.17652 1.00556 0.98175 0.89536 1.25709 1.00697 1.02122 0.98018 1.70035 1.32089 1.39947 1.18605 0.85137 0.77673 0.79043 0.77419 1.20531 1.22185 1.19707 1.18898 0.86672 0.84684 0.75636 1.90769 1.16175 1.87808 1.51524 1.19729 0.98323 0.92496 1.04324 1.21946 0.92223 1.00196 0.96146 1.21244 1.01243 0.90821 1.00226 1.20589 0.94017 0.97033 0.94386 1.18999 0.95921 0.93250 0.99248 1.21209 0.98475 0.91430 0.98078 1.21700 1.02238 0.91692 1.01215 1.23493 0.96667 0.97299 0.97234 1.20548 0.96430 0.99622 0.96875 1.20574 0.97248 0.89278 1.04599 0.90078 0.89106 0.89648 0.89688 0.92809 0.92112 0.90637 0.95469 0.95772 0.94373 0.82745 0.81743 0.86887 0.86075 0.84688 0.90734 0.87904 0.89147 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.21 8.85 127.77 1.13 2.34 16 2 N -0.60 -17.78 2.79 -850.19 -2.37 -20.16 16 3 C 0.13 4.79 5.48 86.38 0.47 5.26 16 4 C 0.14 5.75 4.58 45.09 0.21 5.95 16 5 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 6 C -0.14 -5.82 7.32 31.25 0.23 -5.59 16 7 C 0.16 8.48 7.37 86.48 0.64 9.12 16 8 N -0.63 -34.05 3.57 -694.07 -2.48 -36.53 16 9 C -0.23 -13.33 10.51 84.04 0.88 -12.44 16 10 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 11 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 12 N -0.96 -60.95 11.56 21.65 0.25 -60.70 16 13 Si 0.98 47.59 29.55 68.60 2.03 49.61 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 15 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 17 C 0.55 18.68 6.94 86.79 0.60 19.28 16 18 O -0.58 -25.70 15.09 -3.85 -0.06 -25.76 16 19 C -0.15 -3.86 5.24 -20.09 -0.11 -3.96 16 20 C -0.09 -1.61 7.64 22.58 0.17 -1.44 16 21 C -0.12 -1.66 9.69 22.18 0.21 -1.44 16 22 C -0.06 -0.95 5.68 -19.58 -0.11 -1.06 16 23 C -0.07 -1.55 5.77 -20.18 -0.12 -1.66 16 24 C -0.07 -1.92 9.37 22.75 0.21 -1.71 16 25 C -0.15 -2.62 9.90 23.67 0.23 -2.38 16 26 C -0.13 -1.58 10.02 24.42 0.24 -1.34 16 27 C -0.10 -0.87 6.05 29.63 0.18 -0.69 16 28 C -0.08 -0.72 5.95 29.72 0.18 -0.54 16 29 H 0.08 1.15 6.75 -2.39 -0.02 1.13 16 30 H 0.09 1.37 5.96 -2.39 -0.01 1.36 16 31 H 0.08 1.34 7.96 -2.39 -0.02 1.33 16 32 H 0.08 2.86 7.98 -2.39 -0.02 2.84 16 33 H 0.05 2.47 7.20 -2.39 -0.02 2.45 16 34 H 0.06 2.92 6.92 -2.38 -0.02 2.90 16 35 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.03 1.59 7.46 -2.39 -0.02 1.58 16 37 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.16 2.28 5.13 -2.91 -0.01 2.26 16 40 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.11 3.28 7.96 -2.91 -0.02 3.26 16 42 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 Total: -1.00 -80.52 376.28 4.06 -76.46 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.96 Total: 13.26 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 5.73 Total: 3.81 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -4.60 Total: -117.39 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.06 Total: -25.76 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Total: -80.52 4.06 -76.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085871274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.014 kcal (2) G-P(sol) polarization free energy of solvation -80.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds