Wall clock time and date at job start Tue Mar 31 2020 14:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00057 * 2 1 4 4 C 1.53005 * 109.46701 * 264.94134 * 3 2 1 5 5 H 1.08998 * 112.96632 * 294.14636 * 4 3 2 6 6 C 1.53941 * 113.76932 * 65.83108 * 4 3 2 7 7 C 1.53940 * 86.29312 * 137.90542 * 6 4 3 8 8 N 1.47582 * 113.76570 * 162.47325 * 4 3 2 9 9 C 1.36933 * 134.49804 * 41.06705 * 8 4 3 10 10 H 1.08008 * 119.99730 * 4.67209 * 9 8 4 11 11 C 1.38810 * 120.00554 * 184.67610 * 9 8 4 12 12 N 1.31626 * 119.99883 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00368 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46991 * 60.00419 * 13 11 9 15 15 H 1.48504 * 109.47207 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47284 * 300.00017 * 13 11 9 17 17 C 1.34774 * 119.99488 * 179.97438 * 2 1 3 18 18 O 1.21559 * 119.99879 * 183.65889 * 17 2 1 19 19 C 1.47865 * 120.00431 * 3.65580 * 17 2 1 20 20 C 1.39677 * 120.06922 * 328.90401 * 19 17 2 21 21 C 1.38101 * 120.25181 * 179.76870 * 20 19 17 22 22 C 1.37985 * 120.17290 * 0.20511 * 21 20 19 23 23 C 1.39750 * 120.09426 * 0.02562 * 22 21 20 24 24 C 1.39035 * 120.10229 * 0.05746 * 23 22 21 25 25 C 1.47851 * 119.07306 * 180.02562 * 23 22 21 26 26 C 1.32523 * 119.46879 * 19.02457 * 25 23 22 27 27 C 1.50327 * 121.06074 * 0.43486 * 26 25 23 28 28 C 1.50632 * 120.61892 * 179.97438 * 22 21 20 29 29 H 1.08998 * 109.47261 * 274.18229 * 1 2 3 30 30 H 1.09004 * 109.46805 * 34.17712 * 1 2 3 31 31 H 1.08994 * 109.47233 * 154.17689 * 1 2 3 32 32 H 1.08995 * 109.47645 * 24.94458 * 3 2 1 33 33 H 1.09004 * 109.46798 * 144.94552 * 3 2 1 34 34 H 1.09000 * 113.73813 * 252.25448 * 6 4 3 35 35 H 1.09007 * 113.74136 * 23.45075 * 6 4 3 36 36 H 1.09002 * 113.77058 * 90.69177 * 7 6 4 37 37 H 1.09001 * 113.77193 * 221.97920 * 7 6 4 38 38 H 0.96997 * 119.99912 * 179.97438 * 12 11 9 39 39 H 1.07994 * 119.87266 * 0.04403 * 20 19 17 40 40 H 1.08000 * 119.91163 * 180.23136 * 21 20 19 41 41 H 1.08000 * 120.23904 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.27062 * 199.05149 * 25 23 22 43 43 H 1.07996 * 119.47323 * 180.45137 * 26 25 23 44 44 H 1.08993 * 109.22945 * 203.85027 * 27 26 25 45 45 H 1.09001 * 109.19186 * 84.46312 * 27 26 25 46 46 H 1.08998 * 109.41463 * 265.51586 * 28 22 21 47 47 H 1.08992 * 109.41467 * 25.38092 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5627 1.6467 -1.4370 5 1 3.2710 0.9544 -1.8919 6 6 1.3447 1.9607 -2.3245 7 6 2.1732 3.1366 -2.8728 8 7 2.9281 3.0667 -1.6038 9 6 3.6680 3.9594 -0.8753 10 1 4.1937 3.6302 0.0090 11 6 3.7424 5.2872 -1.2730 12 7 3.1021 5.6882 -2.3508 13 14 4.7512 6.5049 -0.2786 14 1 6.1680 6.0613 -0.2429 15 1 4.6691 7.8470 -0.9090 16 1 4.2191 6.5745 1.1060 17 6 2.1388 -1.1672 0.0005 18 8 3.3525 -1.1684 0.0677 19 6 1.4017 -2.4465 -0.0806 20 6 0.1229 -2.5535 0.4709 21 6 -0.5708 -3.7451 0.3931 22 6 -0.0026 -4.8393 -0.2266 23 6 1.2782 -4.7457 -0.7778 24 6 1.9841 -3.5503 -0.7023 25 6 1.8650 -5.9318 -1.4370 26 6 1.0717 -6.9165 -1.8338 27 6 -0.4162 -6.8424 -1.6330 28 6 -0.7500 -6.1440 -0.3166 29 1 -0.3634 0.0749 1.0249 30 1 -0.3633 0.8502 -0.5773 31 1 -0.3633 -0.9250 -0.4476 32 1 1.5724 2.0493 0.4334 33 1 3.1078 1.1626 0.5903 34 1 1.1318 1.1905 -3.0659 35 1 0.4611 2.2674 -1.7646 36 1 2.7681 2.8835 -3.7503 37 1 1.6016 4.0564 -2.9973 38 1 3.1538 6.6162 -2.6285 39 1 -0.3269 -1.6999 0.9560 40 1 -1.5608 -3.8207 0.8181 41 1 2.9743 -3.4756 -1.1272 42 1 2.9316 -5.9956 -1.5937 43 1 1.5011 -7.7862 -2.3087 44 1 -0.8271 -7.8519 -1.6181 45 1 -0.8618 -6.2856 -2.4573 46 1 -0.4609 -6.7853 0.5159 47 1 -1.8218 -5.9515 -0.2705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085871275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:52 Heat of formation + Delta-G solvation = 77.207526 kcal Electronic energy + Delta-G solvation = -27179.991528 eV Core-core repulsion = 23523.223778 eV Total energy + Delta-G solvation = -3656.767750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68280 -39.33289 -37.75679 -36.17888 -35.20448 -32.71355 -32.13404 -30.90133 -29.46453 -28.36779 -27.81183 -26.55174 -24.49766 -23.31059 -22.94257 -22.66265 -21.91007 -19.91430 -19.08161 -18.36376 -17.01802 -16.66229 -16.44193 -16.15269 -15.51917 -15.36826 -14.98429 -14.80199 -14.53541 -14.25748 -13.92455 -13.63675 -13.46308 -13.29749 -13.04109 -12.88060 -12.72439 -12.46874 -12.28873 -12.14999 -11.97522 -11.59974 -11.36275 -11.19939 -10.99018 -10.81821 -10.78342 -10.66186 -10.44905 -10.19118 -9.82995 -9.74044 -9.66054 -9.48336 -9.00313 -8.72829 -8.32084 -8.30177 -6.81714 -5.70577 -3.03883 0.57569 0.96315 2.09740 2.93680 3.14411 3.43274 3.47504 3.48707 3.72391 4.27569 4.32357 4.46675 4.52835 4.62601 4.70342 4.82267 4.92522 5.00443 5.08535 5.17435 5.24907 5.31643 5.36345 5.39303 5.44539 5.49840 5.60479 5.66348 5.69929 5.72661 5.76936 5.83360 6.01321 6.01690 6.04763 6.15691 6.23319 6.32324 6.35951 6.47546 6.55546 6.62974 6.70639 6.75649 6.86158 7.30046 7.48573 7.58863 7.64229 8.04654 8.34084 9.10288 9.76730 10.66765 11.45656 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.002423 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.445288 B =11554.507952 C =11585.453529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.599 5.599 3 C 0.118 3.882 4 C 0.131 3.869 5 H 0.047 0.953 6 C -0.158 4.158 7 C 0.156 3.844 8 N -0.602 5.602 9 C -0.221 4.221 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.922 5.922 13 Si 0.911 3.089 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.552 3.448 18 O -0.534 6.534 19 C -0.127 4.127 20 C -0.098 4.098 21 C -0.127 4.127 22 C -0.059 4.059 23 C -0.068 4.068 24 C -0.047 4.047 25 C -0.117 4.117 26 C -0.148 4.148 27 C -0.092 4.092 28 C -0.081 4.081 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.022 0.978 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.146 0.854 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 -24.886 3.211 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.331 5.331 3 C -0.005 4.005 4 C 0.023 3.977 5 H 0.064 0.936 6 C -0.196 4.196 7 C 0.031 3.969 8 N -0.329 5.329 9 C -0.348 4.348 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.569 5.569 13 Si 0.741 3.259 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.341 3.659 18 O -0.411 6.411 19 C -0.130 4.130 20 C -0.117 4.117 21 C -0.145 4.145 22 C -0.059 4.059 23 C -0.068 4.068 24 C -0.066 4.066 25 C -0.135 4.135 26 C -0.166 4.166 27 C -0.129 4.129 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.163 0.837 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.133 -24.506 3.317 27.545 hybrid contribution 0.759 0.780 0.393 1.158 sum -11.373 -23.726 3.710 26.571 Atomic orbital electron populations 1.22505 0.80229 1.04208 1.01427 1.47699 1.06809 1.06236 1.72345 1.21816 0.96949 0.82505 0.99181 1.22515 0.93782 0.88543 0.92863 0.93600 1.23754 0.97423 0.99376 0.99040 1.22299 0.90708 0.95648 0.88256 1.46057 1.60295 1.04320 1.22180 1.18980 1.22460 0.88080 1.05307 0.90465 1.24767 1.00791 0.96828 0.98046 1.69814 1.46134 1.15888 1.25063 0.86223 0.79935 0.80506 0.79242 1.21226 1.21616 1.21094 1.18333 0.87126 0.83485 0.77000 1.90795 1.13466 1.87163 1.49708 1.19922 0.95444 0.94549 1.03058 1.22005 0.93247 0.98428 0.97980 1.20854 1.00483 0.92221 1.00939 1.20142 0.93718 0.95582 0.96479 1.18784 0.93936 0.93874 1.00167 1.21253 0.99257 0.90496 0.95609 1.21634 0.99451 0.92919 0.99448 1.23131 0.95299 0.98279 0.99880 1.20422 0.93823 1.01057 0.97636 1.20463 0.99678 0.93391 0.98274 0.92367 0.90495 0.89602 0.89673 0.90516 0.93444 0.90942 0.95976 0.90423 0.93706 0.83698 0.85331 0.84743 0.85865 0.86545 0.90498 0.90510 0.90244 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 8.58 59.85 0.51 1.16 16 2 N -0.60 -9.22 2.78 -182.68 -0.51 -9.73 16 3 C 0.12 2.23 5.31 -4.04 -0.02 2.21 16 4 C 0.13 2.83 4.54 -66.86 -0.30 2.52 16 5 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 6 C -0.16 -3.05 7.18 -25.80 -0.19 -3.23 16 7 C 0.16 3.78 7.64 -2.85 -0.02 3.76 16 8 N -0.60 -15.79 3.58 -169.72 -0.61 -16.40 16 9 C -0.22 -6.30 10.51 -15.06 -0.16 -6.46 16 10 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.70 11.32 55.49 0.63 -27.07 16 13 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 C 0.55 9.17 7.42 -12.32 -0.09 9.08 16 18 O -0.53 -11.00 16.37 5.31 0.09 -10.92 16 19 C -0.13 -1.68 5.48 -104.98 -0.58 -2.26 16 20 C -0.10 -1.00 7.44 -39.09 -0.29 -1.29 16 21 C -0.13 -1.10 9.69 -39.72 -0.38 -1.49 16 22 C -0.06 -0.55 5.68 -104.18 -0.59 -1.14 16 23 C -0.07 -0.73 5.77 -105.10 -0.61 -1.34 16 24 C -0.05 -0.60 9.37 -38.84 -0.36 -0.97 16 25 C -0.12 -1.06 9.90 -37.56 -0.37 -1.43 16 26 C -0.15 -1.08 10.02 -36.40 -0.36 -1.45 16 27 C -0.09 -0.57 6.05 -28.21 -0.17 -0.74 16 28 C -0.08 -0.53 5.95 -28.06 -0.17 -0.70 16 29 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 30 H 0.08 0.85 6.42 -51.93 -0.33 0.52 16 31 H 0.09 0.81 4.76 -51.93 -0.25 0.56 16 32 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 33 H 0.08 1.60 7.53 -51.93 -0.39 1.21 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.30 6.88 -51.92 -0.36 0.95 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 2.04 6.98 -51.93 -0.36 1.68 16 38 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.15 1.22 4.71 -52.49 -0.25 0.97 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 1.77 7.94 -52.49 -0.42 1.35 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.39 8.07 -51.93 -0.42 -0.02 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -34.33 374.84 -10.95 -45.28 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.93 Total: -0.32 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -4.25 Total: -4.08 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.49 Total: -53.19 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.33 -10.95 -45.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085871275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.487 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds