Wall clock time and date at job start Tue Mar 31 2020 14:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00057 * 2 1 4 4 C 1.53005 * 109.46701 * 264.94134 * 3 2 1 5 5 H 1.08998 * 112.96632 * 294.14636 * 4 3 2 6 6 C 1.53941 * 113.76932 * 65.83108 * 4 3 2 7 7 C 1.53940 * 86.29312 * 137.90542 * 6 4 3 8 8 N 1.47582 * 113.76570 * 162.47325 * 4 3 2 9 9 C 1.36933 * 134.49804 * 41.06705 * 8 4 3 10 10 H 1.08008 * 119.99730 * 4.67209 * 9 8 4 11 11 C 1.38810 * 120.00554 * 184.67610 * 9 8 4 12 12 N 1.31626 * 119.99883 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00368 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46991 * 60.00419 * 13 11 9 15 15 H 1.48504 * 109.47207 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47284 * 300.00017 * 13 11 9 17 17 C 1.34774 * 119.99488 * 179.97438 * 2 1 3 18 18 O 1.21559 * 119.99879 * 183.65889 * 17 2 1 19 19 C 1.47865 * 120.00431 * 3.65580 * 17 2 1 20 20 C 1.39677 * 120.06922 * 328.90401 * 19 17 2 21 21 C 1.38101 * 120.25181 * 179.76870 * 20 19 17 22 22 C 1.37985 * 120.17290 * 0.20511 * 21 20 19 23 23 C 1.39750 * 120.09426 * 0.02562 * 22 21 20 24 24 C 1.39035 * 120.10229 * 0.05746 * 23 22 21 25 25 C 1.47851 * 119.07306 * 180.02562 * 23 22 21 26 26 C 1.32523 * 119.46879 * 19.02457 * 25 23 22 27 27 C 1.50327 * 121.06074 * 0.43486 * 26 25 23 28 28 C 1.50632 * 120.61892 * 179.97438 * 22 21 20 29 29 H 1.08998 * 109.47261 * 274.18229 * 1 2 3 30 30 H 1.09004 * 109.46805 * 34.17712 * 1 2 3 31 31 H 1.08994 * 109.47233 * 154.17689 * 1 2 3 32 32 H 1.08995 * 109.47645 * 24.94458 * 3 2 1 33 33 H 1.09004 * 109.46798 * 144.94552 * 3 2 1 34 34 H 1.09000 * 113.73813 * 252.25448 * 6 4 3 35 35 H 1.09007 * 113.74136 * 23.45075 * 6 4 3 36 36 H 1.09002 * 113.77058 * 90.69177 * 7 6 4 37 37 H 1.09001 * 113.77193 * 221.97920 * 7 6 4 38 38 H 0.96997 * 119.99912 * 179.97438 * 12 11 9 39 39 H 1.07994 * 119.87266 * 0.04403 * 20 19 17 40 40 H 1.08000 * 119.91163 * 180.23136 * 21 20 19 41 41 H 1.08000 * 120.23904 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.27062 * 199.05149 * 25 23 22 43 43 H 1.07996 * 119.47323 * 180.45137 * 26 25 23 44 44 H 1.08993 * 109.22945 * 203.85027 * 27 26 25 45 45 H 1.09001 * 109.19186 * 84.46312 * 27 26 25 46 46 H 1.08998 * 109.41463 * 265.51586 * 28 22 21 47 47 H 1.08992 * 109.41467 * 25.38092 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5627 1.6467 -1.4370 5 1 3.2710 0.9544 -1.8919 6 6 1.3447 1.9607 -2.3245 7 6 2.1732 3.1366 -2.8728 8 7 2.9281 3.0667 -1.6038 9 6 3.6680 3.9594 -0.8753 10 1 4.1937 3.6302 0.0090 11 6 3.7424 5.2872 -1.2730 12 7 3.1021 5.6882 -2.3508 13 14 4.7512 6.5049 -0.2786 14 1 6.1680 6.0613 -0.2429 15 1 4.6691 7.8470 -0.9090 16 1 4.2191 6.5745 1.1060 17 6 2.1388 -1.1672 0.0005 18 8 3.3525 -1.1684 0.0677 19 6 1.4017 -2.4465 -0.0806 20 6 0.1229 -2.5535 0.4709 21 6 -0.5708 -3.7451 0.3931 22 6 -0.0026 -4.8393 -0.2266 23 6 1.2782 -4.7457 -0.7778 24 6 1.9841 -3.5503 -0.7023 25 6 1.8650 -5.9318 -1.4370 26 6 1.0717 -6.9165 -1.8338 27 6 -0.4162 -6.8424 -1.6330 28 6 -0.7500 -6.1440 -0.3166 29 1 -0.3634 0.0749 1.0249 30 1 -0.3633 0.8502 -0.5773 31 1 -0.3633 -0.9250 -0.4476 32 1 1.5724 2.0493 0.4334 33 1 3.1078 1.1626 0.5903 34 1 1.1318 1.1905 -3.0659 35 1 0.4611 2.2674 -1.7646 36 1 2.7681 2.8835 -3.7503 37 1 1.6016 4.0564 -2.9973 38 1 3.1538 6.6162 -2.6285 39 1 -0.3269 -1.6999 0.9560 40 1 -1.5608 -3.8207 0.8181 41 1 2.9743 -3.4756 -1.1272 42 1 2.9316 -5.9956 -1.5937 43 1 1.5011 -7.7862 -2.3087 44 1 -0.8271 -7.8519 -1.6181 45 1 -0.8618 -6.2856 -2.4573 46 1 -0.4609 -6.7853 0.5159 47 1 -1.8218 -5.9515 -0.2705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085871275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:51 Heat of formation + Delta-G solvation = 57.795883 kcal Electronic energy + Delta-G solvation = -27180.833280 eV Core-core repulsion = 23523.223778 eV Total energy + Delta-G solvation = -3657.609502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69603 -40.40644 -39.44324 -37.04608 -36.42974 -34.25199 -33.40326 -31.85209 -30.16151 -29.88166 -29.62243 -27.65409 -25.52776 -25.27201 -23.92526 -23.66457 -22.85212 -21.17044 -20.74297 -19.33108 -18.66859 -17.78910 -17.58935 -17.11587 -16.89545 -16.70944 -16.21886 -15.93338 -15.59253 -15.43372 -15.37682 -14.92389 -14.50914 -14.23049 -14.08532 -13.98256 -13.86151 -13.60414 -13.44461 -13.34202 -13.14805 -12.94801 -12.74454 -12.59199 -12.43986 -12.32430 -12.17549 -11.86022 -11.80887 -11.60663 -11.42142 -11.36619 -11.00216 -10.85636 -10.78030 -9.88306 -9.62977 -9.00424 -8.92398 -7.90496 -5.25701 -0.19930 0.12897 1.38172 1.42936 1.46738 1.52651 1.77655 1.97701 2.47288 2.86455 3.27949 3.35707 3.48932 3.69376 3.77037 3.84847 3.90802 4.09882 4.13881 4.17994 4.24895 4.26748 4.36711 4.43601 4.47894 4.52982 4.61446 4.70035 4.75236 4.78247 4.85681 4.91695 4.97641 4.99237 5.02397 5.02926 5.10692 5.19219 5.21356 5.27650 5.32066 5.40611 5.46681 5.54649 5.69135 5.73771 5.88628 5.93871 5.96717 6.36467 6.91241 7.07961 7.59363 8.55631 9.25135 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.002423 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.445288 B =11554.507952 C =11585.453529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.595 5.595 3 C 0.135 3.865 4 C 0.130 3.870 5 H 0.021 0.979 6 C -0.121 4.121 7 C 0.147 3.853 8 N -0.628 5.628 9 C -0.234 4.234 10 H 0.075 0.925 11 C -0.063 4.063 12 N -0.951 5.951 13 Si 0.977 3.023 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.272 1.272 17 C 0.547 3.453 18 O -0.591 6.591 19 C -0.147 4.147 20 C -0.095 4.095 21 C -0.117 4.117 22 C -0.060 4.060 23 C -0.074 4.074 24 C -0.073 4.073 25 C -0.153 4.153 26 C -0.128 4.128 27 C -0.097 4.097 28 C -0.081 4.081 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.008 0.992 37 H 0.055 0.945 38 H 0.249 0.751 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.135 0.865 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.575 -27.173 4.312 32.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.326 5.326 3 C 0.011 3.989 4 C 0.023 3.977 5 H 0.039 0.961 6 C -0.159 4.159 7 C 0.022 3.978 8 N -0.355 5.355 9 C -0.363 4.363 10 H 0.093 0.907 11 C -0.257 4.257 12 N -0.599 5.599 13 Si 0.805 3.195 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.198 1.198 17 C 0.338 3.662 18 O -0.473 6.473 19 C -0.150 4.150 20 C -0.113 4.113 21 C -0.135 4.135 22 C -0.060 4.060 23 C -0.074 4.074 24 C -0.092 4.092 25 C -0.171 4.171 26 C -0.145 4.145 27 C -0.134 4.134 28 C -0.117 4.117 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.184 0.816 40 H 0.186 0.814 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.152 0.848 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.845 -26.829 4.426 31.471 hybrid contribution 1.885 1.314 -0.006 2.298 sum -13.960 -25.515 4.420 29.418 Atomic orbital electron populations 1.22869 0.76915 1.05508 1.03707 1.47718 1.08671 1.04512 1.71669 1.21349 0.96494 0.84442 0.96617 1.22560 0.94210 0.85907 0.95054 0.96116 1.23503 0.96513 0.97387 0.98451 1.22294 0.91224 0.96730 0.87531 1.46463 1.60181 1.06007 1.22849 1.19294 1.22501 0.88969 1.05491 0.90734 1.25592 1.02239 0.98518 0.99304 1.69995 1.47518 1.15879 1.26537 0.85185 0.78258 0.77840 0.78239 1.21086 1.21624 1.19755 1.18977 0.86705 0.84847 0.75721 1.90753 1.16104 1.88043 1.52362 1.19705 0.96950 0.92711 1.05644 1.22215 0.91740 1.00057 0.97268 1.21290 1.01659 0.90968 0.99562 1.20608 0.92981 0.97302 0.95096 1.18995 0.94768 0.93384 1.00257 1.21193 0.98969 0.91848 0.97233 1.21690 0.99828 0.93614 1.01949 1.23506 0.96194 0.97605 0.97225 1.20556 0.92620 1.02609 0.97598 1.20586 1.00781 0.91773 0.98586 0.89401 0.90060 0.87573 0.88941 0.93457 0.90547 0.88633 0.97412 0.92700 0.94166 0.81570 0.81405 0.87171 0.86366 0.84755 0.87927 0.90362 0.89474 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.95 8.58 127.77 1.10 2.05 16 2 N -0.60 -18.08 2.78 -850.16 -2.37 -20.45 16 3 C 0.14 5.20 5.31 86.38 0.46 5.66 16 4 C 0.13 5.75 4.54 45.09 0.20 5.96 16 5 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 6 C -0.12 -4.56 7.18 31.25 0.22 -4.34 16 7 C 0.15 7.33 7.64 86.43 0.66 7.99 16 8 N -0.63 -33.95 3.58 -690.88 -2.48 -36.42 16 9 C -0.23 -13.75 10.51 84.03 0.88 -12.87 16 10 H 0.07 4.28 7.83 -2.91 -0.02 4.26 16 11 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 12 N -0.95 -58.54 11.32 21.65 0.25 -58.29 16 13 Si 0.98 47.29 29.55 68.60 2.03 49.31 16 14 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 15 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 17 C 0.55 18.82 7.42 86.79 0.64 19.46 16 18 O -0.59 -26.32 16.37 -3.90 -0.06 -26.38 16 19 C -0.15 -3.91 5.48 -20.09 -0.11 -4.02 16 20 C -0.09 -1.67 7.44 22.59 0.17 -1.51 16 21 C -0.12 -1.55 9.69 22.18 0.21 -1.34 16 22 C -0.06 -0.92 5.68 -19.58 -0.11 -1.04 16 23 C -0.07 -1.57 5.77 -20.18 -0.12 -1.68 16 24 C -0.07 -1.98 9.37 22.75 0.21 -1.77 16 25 C -0.15 -2.74 9.90 23.67 0.23 -2.51 16 26 C -0.13 -1.57 10.02 24.43 0.24 -1.33 16 27 C -0.10 -0.82 6.05 29.63 0.18 -0.64 16 28 C -0.08 -0.70 5.95 29.73 0.18 -0.52 16 29 H 0.09 1.19 7.39 -2.39 -0.02 1.17 16 30 H 0.08 1.50 6.42 -2.38 -0.02 1.48 16 31 H 0.11 1.62 4.76 -2.39 -0.01 1.60 16 32 H 0.09 3.41 8.03 -2.39 -0.02 3.39 16 33 H 0.05 2.08 7.53 -2.38 -0.02 2.06 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.10 3.20 6.88 -2.38 -0.02 3.19 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.05 2.97 6.98 -2.39 -0.02 2.95 16 38 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.17 2.12 4.71 -2.91 -0.01 2.11 16 40 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 41 H 0.11 3.34 7.94 -2.91 -0.02 3.31 16 42 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.13 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.11 0.42 8.07 -2.39 -0.02 0.40 16 Total: -1.00 -80.19 374.84 4.07 -76.12 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.97 Total: 11.81 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.73 Total: 4.31 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.60 Total: -115.17 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -80.19 4.07 -76.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085871275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.913 kcal (2) G-P(sol) polarization free energy of solvation -80.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds