Wall clock time and date at job start Tue Mar 31 2020 14:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 120.00170 * 2 1 4 4 C 1.53002 * 109.47061 * 95.36996 * 3 2 1 5 5 H 1.09000 * 112.96620 * 66.01607 * 4 3 2 6 6 C 1.53949 * 113.76675 * 294.34009 * 4 3 2 7 7 C 1.53943 * 86.28856 * 222.09199 * 6 4 3 8 8 N 1.47584 * 113.76766 * 197.69870 * 4 3 2 9 9 C 1.36937 * 134.49256 * 318.92674 * 8 4 3 10 10 H 1.07996 * 119.99956 * 5.72052 * 9 8 4 11 11 C 1.38809 * 119.99774 * 185.71739 * 9 8 4 12 12 N 1.31618 * 119.99984 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99741 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47420 * 60.00161 * 13 11 9 15 15 H 1.48502 * 109.47080 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47482 * 300.00151 * 13 11 9 17 17 C 1.34780 * 119.99875 * 180.02562 * 2 1 3 18 18 O 1.21574 * 119.99930 * 184.51895 * 17 2 1 19 19 C 1.47689 * 120.00165 * 4.52260 * 17 2 1 20 20 C 1.39762 * 119.95606 * 329.42700 * 19 17 2 21 21 C 1.37677 * 120.02643 * 179.97438 * 20 19 17 22 22 C 1.39494 * 119.83094 * 359.97438 * 21 20 19 23 23 C 1.39842 * 120.18983 * 0.02562 * 22 21 20 24 24 C 1.37462 * 120.00101 * 359.73421 * 23 22 21 25 25 C 1.50603 * 119.34259 * 179.97438 * 23 22 21 26 26 C 1.52742 * 109.82212 * 325.47637 * 25 23 22 27 27 C 1.50323 * 110.70814 * 50.38375 * 26 25 23 28 28 C 1.32632 * 121.06761 * 324.17727 * 27 26 25 29 29 H 1.09001 * 109.46964 * 274.78993 * 1 2 3 30 30 H 1.09003 * 109.47508 * 154.79087 * 1 2 3 31 31 H 1.08999 * 109.47220 * 34.78978 * 1 2 3 32 32 H 1.09001 * 109.47333 * 215.36799 * 3 2 1 33 33 H 1.09003 * 109.47233 * 335.37143 * 3 2 1 34 34 H 1.08995 * 113.74155 * 336.43702 * 6 4 3 35 35 H 1.09003 * 113.73659 * 107.63975 * 6 4 3 36 36 H 1.08995 * 113.77537 * 137.90701 * 7 6 4 37 37 H 1.09010 * 113.77192 * 269.19826 * 7 6 4 38 38 H 0.97003 * 119.99844 * 180.02562 * 12 11 9 39 39 H 1.08005 * 119.99110 * 359.97438 * 20 19 17 40 40 H 1.07998 * 120.08464 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.06516 * 180.24706 * 24 23 22 42 42 H 1.08996 * 109.41331 * 205.36519 * 25 23 22 43 43 H 1.09006 * 109.40824 * 85.58240 * 25 23 22 44 44 H 1.09002 * 109.22697 * 290.06731 * 26 25 23 45 45 H 1.08996 * 109.22933 * 170.70828 * 26 25 23 46 46 H 1.08001 * 119.45964 * 144.14955 * 27 26 25 47 47 H 1.08005 * 120.25425 * 180.42405 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5694 1.6429 1.4362 5 1 3.2821 0.9509 1.8850 6 6 1.3553 1.9505 2.3314 7 6 2.1836 3.1268 2.8791 8 7 2.9318 3.0634 1.6059 9 6 3.6653 3.9605 0.8763 10 1 4.0472 3.6826 -0.0949 11 6 3.9181 5.2270 1.3851 12 7 3.4531 5.5654 2.5690 13 14 4.9182 6.4509 0.3896 14 1 4.2353 6.7132 -0.9028 15 1 5.0453 7.7205 1.1493 16 1 6.2694 5.8920 0.1309 17 6 2.1388 -1.1672 -0.0005 18 8 3.3517 -1.1689 0.0824 19 6 1.4038 -2.4442 -0.1019 20 6 0.1130 -2.5501 0.4232 21 6 -0.5737 -3.7397 0.3290 22 6 0.0221 -4.8375 -0.2920 23 6 1.3136 -4.7327 -0.8178 24 6 1.9977 -3.5437 -0.7284 25 6 1.9387 -5.9301 -1.4838 26 6 1.4859 -7.2086 -0.7814 27 6 -0.0103 -7.2351 -0.6383 28 6 -0.6953 -6.1237 -0.4044 29 1 -0.3633 0.0858 1.0241 30 1 -0.3634 -0.9298 -0.4377 31 1 -0.3633 0.8440 -0.5863 32 1 3.1049 1.1644 -0.5948 33 1 1.5701 2.0505 -0.4283 34 1 0.4685 2.2584 1.7776 35 1 1.1475 1.1763 3.0701 36 1 1.6108 4.0451 3.0081 37 1 2.7826 2.8728 3.7538 38 1 3.6294 6.4506 2.9244 39 1 -0.3462 -1.6984 0.9032 40 1 -1.5711 -3.8226 0.7349 41 1 2.9937 -3.4605 -1.1377 42 1 3.0243 -5.8506 -1.4271 43 1 1.6331 -5.9636 -2.5296 44 1 1.9420 -7.2557 0.2075 45 1 1.8062 -8.0716 -1.3651 46 1 -0.5358 -8.1743 -0.7279 47 1 -1.7694 -6.1589 -0.2970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085928625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:55 Heat of formation + Delta-G solvation = 78.735702 kcal Electronic energy + Delta-G solvation = -27128.919421 eV Core-core repulsion = 23472.217937 eV Total energy + Delta-G solvation = -3656.701484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70068 -39.32595 -37.73674 -36.20065 -35.21529 -32.72662 -32.13190 -30.92921 -29.47055 -28.36375 -27.79323 -26.55443 -24.35328 -23.52177 -23.27356 -22.22725 -22.03693 -19.64239 -19.05885 -18.62612 -17.11558 -16.57444 -16.43533 -16.16967 -15.67260 -15.23389 -14.98700 -14.77539 -14.52947 -14.17485 -13.93970 -13.66555 -13.42622 -13.29307 -13.07573 -12.89468 -12.77760 -12.35410 -12.32728 -12.16062 -12.00635 -11.67489 -11.35381 -11.04242 -10.95569 -10.92373 -10.70900 -10.69152 -10.43518 -10.25470 -9.84694 -9.76403 -9.63309 -9.42817 -9.00939 -8.74261 -8.38510 -8.25983 -6.80774 -5.71524 -3.02886 0.42068 1.16056 1.96287 2.97488 3.13725 3.43393 3.47883 3.48932 3.69276 4.28539 4.32507 4.48613 4.53786 4.59413 4.70799 4.81966 4.91347 5.01980 5.06940 5.18191 5.24341 5.29344 5.38884 5.42755 5.47720 5.51513 5.57686 5.67763 5.70366 5.71318 5.79934 5.86406 5.94724 6.00698 6.04269 6.17890 6.22923 6.29490 6.31468 6.45699 6.51821 6.63513 6.71413 6.76083 6.89100 7.30490 7.46470 7.58868 7.62522 8.03864 8.33979 9.10692 9.76984 10.67903 11.46375 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.002401 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.670941 B =11659.488684 C =12169.433645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.599 5.599 3 C 0.120 3.880 4 C 0.130 3.870 5 H 0.048 0.952 6 C -0.159 4.159 7 C 0.166 3.834 8 N -0.603 5.603 9 C -0.221 4.221 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.922 5.922 13 Si 0.910 3.090 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.285 1.285 17 C 0.551 3.449 18 O -0.532 6.532 19 C -0.121 4.121 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.039 4.039 23 C -0.087 4.087 24 C -0.061 4.061 25 C -0.079 4.079 26 C -0.094 4.094 27 C -0.139 4.139 28 C -0.126 4.126 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.253 0.747 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 -24.951 -6.731 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.331 5.331 3 C -0.003 4.003 4 C 0.022 3.978 5 H 0.066 0.934 6 C -0.198 4.198 7 C 0.040 3.960 8 N -0.329 5.329 9 C -0.349 4.349 10 H 0.096 0.904 11 C -0.205 4.205 12 N -0.569 5.569 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.339 3.661 18 O -0.409 6.409 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.133 4.133 22 C -0.040 4.040 23 C -0.087 4.087 24 C -0.080 4.080 25 C -0.116 4.116 26 C -0.131 4.131 27 C -0.157 4.157 28 C -0.144 4.144 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.167 0.833 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.135 0.865 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.776 -24.579 -6.745 28.077 hybrid contribution 0.557 0.798 -0.325 1.026 sum -11.219 -23.780 -7.070 27.228 Atomic orbital electron populations 1.22557 0.80235 1.03698 1.01957 1.47700 1.06806 1.06236 1.72374 1.21822 0.96725 0.82490 0.99247 1.22511 0.93893 0.88613 0.92767 0.93414 1.23772 0.97479 0.99450 0.99082 1.22125 0.90377 0.94899 0.88553 1.46121 1.60416 1.03966 1.22423 1.18974 1.25887 0.91921 0.98108 0.90398 1.24795 1.01007 0.97884 0.96769 1.69823 1.49490 1.20228 1.17345 0.86240 0.80203 0.80595 0.78974 1.21124 1.21625 1.21188 1.18309 0.87149 0.83483 0.77142 1.90808 1.13564 1.87071 1.49467 1.20023 0.95143 0.94561 1.02639 1.21979 0.93359 0.98515 0.98605 1.21112 1.00287 0.91932 0.99958 1.19053 0.93394 0.93877 0.97640 1.19862 0.93920 0.95102 0.99838 1.20943 0.99581 0.90747 0.96723 1.20417 1.00533 0.91330 0.99307 1.20453 0.93293 0.97787 1.01579 1.23234 0.95947 0.98021 0.98463 1.21646 0.99082 0.91508 1.02125 0.91859 0.89423 0.91098 0.90763 0.89760 0.91021 0.93402 0.91581 0.95525 0.93676 0.83349 0.85225 0.84904 0.90003 0.90353 0.90386 0.90405 0.86545 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 8.50 59.84 0.51 1.13 16 2 N -0.60 -9.14 2.78 -182.75 -0.51 -9.65 16 3 C 0.12 2.25 5.27 -4.04 -0.02 2.23 16 4 C 0.13 2.82 4.54 -66.86 -0.30 2.51 16 5 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 6 C -0.16 -3.06 7.23 -25.79 -0.19 -3.25 16 7 C 0.17 4.03 7.39 -2.85 -0.02 4.01 16 8 N -0.60 -15.86 3.58 -169.70 -0.61 -16.47 16 9 C -0.22 -6.33 10.51 -15.06 -0.16 -6.48 16 10 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.93 11.56 55.49 0.64 -27.29 16 13 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 C 0.55 9.08 7.40 -12.40 -0.09 8.99 16 18 O -0.53 -10.93 16.44 5.30 0.09 -10.85 16 19 C -0.12 -1.58 5.52 -104.89 -0.58 -2.16 16 20 C -0.11 -1.10 7.42 -39.22 -0.29 -1.40 16 21 C -0.11 -1.04 9.80 -39.32 -0.39 -1.42 16 22 C -0.04 -0.38 5.78 -104.96 -0.61 -0.98 16 23 C -0.09 -0.90 5.67 -104.35 -0.59 -1.49 16 24 C -0.06 -0.75 9.24 -39.29 -0.36 -1.11 16 25 C -0.08 -0.61 5.95 -28.06 -0.17 -0.78 16 26 C -0.09 -0.61 6.05 -28.20 -0.17 -0.78 16 27 C -0.14 -0.91 10.03 -36.39 -0.36 -1.28 16 28 C -0.13 -0.95 9.90 -37.62 -0.37 -1.32 16 29 H 0.06 0.62 7.27 -51.93 -0.38 0.24 16 30 H 0.09 0.79 4.59 -51.93 -0.24 0.55 16 31 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 32 H 0.07 1.53 7.66 -51.93 -0.40 1.13 16 33 H 0.08 1.54 7.88 -51.93 -0.41 1.13 16 34 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.72 7.45 -51.93 -0.39 1.34 16 37 H 0.03 0.68 8.14 -51.92 -0.42 0.25 16 38 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.15 1.31 4.64 -52.48 -0.24 1.07 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.13 1.64 7.93 -52.48 -0.42 1.22 16 42 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 47 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -34.62 377.60 -11.05 -45.67 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.07 Total: -0.82 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -4.26 Total: -3.91 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.47 Total: -53.40 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.62 -11.05 -45.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085928625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.406 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds