Wall clock time and date at job start Tue Mar 31 2020 14:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 120.00170 * 2 1 4 4 C 1.53002 * 109.47061 * 95.36996 * 3 2 1 5 5 H 1.09000 * 112.96620 * 66.01607 * 4 3 2 6 6 C 1.53949 * 113.76675 * 294.34009 * 4 3 2 7 7 C 1.53943 * 86.28856 * 222.09199 * 6 4 3 8 8 N 1.47584 * 113.76766 * 197.69870 * 4 3 2 9 9 C 1.36937 * 134.49256 * 318.92674 * 8 4 3 10 10 H 1.07996 * 119.99956 * 5.72052 * 9 8 4 11 11 C 1.38809 * 119.99774 * 185.71739 * 9 8 4 12 12 N 1.31618 * 119.99984 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99741 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47420 * 60.00161 * 13 11 9 15 15 H 1.48502 * 109.47080 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47482 * 300.00151 * 13 11 9 17 17 C 1.34780 * 119.99875 * 180.02562 * 2 1 3 18 18 O 1.21574 * 119.99930 * 184.51895 * 17 2 1 19 19 C 1.47689 * 120.00165 * 4.52260 * 17 2 1 20 20 C 1.39762 * 119.95606 * 329.42700 * 19 17 2 21 21 C 1.37677 * 120.02643 * 179.97438 * 20 19 17 22 22 C 1.39494 * 119.83094 * 359.97438 * 21 20 19 23 23 C 1.39842 * 120.18983 * 0.02562 * 22 21 20 24 24 C 1.37462 * 120.00101 * 359.73421 * 23 22 21 25 25 C 1.50603 * 119.34259 * 179.97438 * 23 22 21 26 26 C 1.52742 * 109.82212 * 325.47637 * 25 23 22 27 27 C 1.50323 * 110.70814 * 50.38375 * 26 25 23 28 28 C 1.32632 * 121.06761 * 324.17727 * 27 26 25 29 29 H 1.09001 * 109.46964 * 274.78993 * 1 2 3 30 30 H 1.09003 * 109.47508 * 154.79087 * 1 2 3 31 31 H 1.08999 * 109.47220 * 34.78978 * 1 2 3 32 32 H 1.09001 * 109.47333 * 215.36799 * 3 2 1 33 33 H 1.09003 * 109.47233 * 335.37143 * 3 2 1 34 34 H 1.08995 * 113.74155 * 336.43702 * 6 4 3 35 35 H 1.09003 * 113.73659 * 107.63975 * 6 4 3 36 36 H 1.08995 * 113.77537 * 137.90701 * 7 6 4 37 37 H 1.09010 * 113.77192 * 269.19826 * 7 6 4 38 38 H 0.97003 * 119.99844 * 180.02562 * 12 11 9 39 39 H 1.08005 * 119.99110 * 359.97438 * 20 19 17 40 40 H 1.07998 * 120.08464 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.06516 * 180.24706 * 24 23 22 42 42 H 1.08996 * 109.41331 * 205.36519 * 25 23 22 43 43 H 1.09006 * 109.40824 * 85.58240 * 25 23 22 44 44 H 1.09002 * 109.22697 * 290.06731 * 26 25 23 45 45 H 1.08996 * 109.22933 * 170.70828 * 26 25 23 46 46 H 1.08001 * 119.45964 * 144.14955 * 27 26 25 47 47 H 1.08005 * 120.25425 * 180.42405 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5694 1.6429 1.4362 5 1 3.2821 0.9509 1.8850 6 6 1.3553 1.9505 2.3314 7 6 2.1836 3.1268 2.8791 8 7 2.9318 3.0634 1.6059 9 6 3.6653 3.9605 0.8763 10 1 4.0472 3.6826 -0.0949 11 6 3.9181 5.2270 1.3851 12 7 3.4531 5.5654 2.5690 13 14 4.9182 6.4509 0.3896 14 1 4.2353 6.7132 -0.9028 15 1 5.0453 7.7205 1.1493 16 1 6.2694 5.8920 0.1309 17 6 2.1388 -1.1672 -0.0005 18 8 3.3517 -1.1689 0.0824 19 6 1.4038 -2.4442 -0.1019 20 6 0.1130 -2.5501 0.4232 21 6 -0.5737 -3.7397 0.3290 22 6 0.0221 -4.8375 -0.2920 23 6 1.3136 -4.7327 -0.8178 24 6 1.9977 -3.5437 -0.7284 25 6 1.9387 -5.9301 -1.4838 26 6 1.4859 -7.2086 -0.7814 27 6 -0.0103 -7.2351 -0.6383 28 6 -0.6953 -6.1237 -0.4044 29 1 -0.3633 0.0858 1.0241 30 1 -0.3634 -0.9298 -0.4377 31 1 -0.3633 0.8440 -0.5863 32 1 3.1049 1.1644 -0.5948 33 1 1.5701 2.0505 -0.4283 34 1 0.4685 2.2584 1.7776 35 1 1.1475 1.1763 3.0701 36 1 1.6108 4.0451 3.0081 37 1 2.7826 2.8728 3.7538 38 1 3.6294 6.4506 2.9244 39 1 -0.3462 -1.6984 0.9032 40 1 -1.5711 -3.8226 0.7349 41 1 2.9937 -3.4605 -1.1377 42 1 3.0243 -5.8506 -1.4271 43 1 1.6331 -5.9636 -2.5296 44 1 1.9420 -7.2557 0.2075 45 1 1.8062 -8.0716 -1.3651 46 1 -0.5358 -8.1743 -0.7279 47 1 -1.7694 -6.1589 -0.2970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085928625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:54 Heat of formation + Delta-G solvation = 59.218872 kcal Electronic energy + Delta-G solvation = -27129.765734 eV Core-core repulsion = 23472.217937 eV Total energy + Delta-G solvation = -3657.547797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70747 -40.39640 -39.41935 -37.06628 -36.42011 -34.25431 -33.41393 -31.88030 -30.16443 -29.86300 -29.61011 -27.65056 -25.45988 -25.20137 -24.36123 -23.46156 -22.88762 -21.07321 -20.54444 -19.45426 -18.64905 -17.93913 -17.56806 -17.17247 -16.96036 -16.48755 -16.23297 -15.96761 -15.70059 -15.32488 -15.21923 -15.00605 -14.43883 -14.29394 -14.05443 -13.96545 -13.89640 -13.68865 -13.52155 -13.33313 -13.01104 -12.94038 -12.74782 -12.60318 -12.59059 -12.30870 -12.17431 -11.84103 -11.61214 -11.57556 -11.54768 -11.35991 -11.00492 -10.86979 -10.77535 -9.83892 -9.65891 -9.00894 -8.91324 -7.92332 -5.25368 -0.37173 0.38457 1.25558 1.42456 1.46660 1.52402 1.87378 1.96565 2.47653 2.86010 3.27595 3.38165 3.50142 3.68121 3.77766 3.85748 3.90597 4.08492 4.13640 4.18388 4.23144 4.27400 4.38545 4.43073 4.49534 4.51809 4.62723 4.68529 4.74069 4.78720 4.87969 4.91649 4.95354 4.95548 4.99896 5.03265 5.13315 5.14851 5.19378 5.27403 5.33262 5.39490 5.47681 5.54230 5.68121 5.72604 5.87876 5.92523 6.00503 6.37206 6.91219 7.09107 7.59322 8.56319 9.25257 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.002401 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.670941 B =11659.488684 C =12169.433645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.595 5.595 3 C 0.137 3.863 4 C 0.129 3.871 5 H 0.020 0.980 6 C -0.121 4.121 7 C 0.157 3.843 8 N -0.629 5.629 9 C -0.233 4.233 10 H 0.078 0.922 11 C -0.066 4.066 12 N -0.953 5.953 13 Si 0.977 3.023 14 H -0.271 1.271 15 H -0.292 1.292 16 H -0.284 1.284 17 C 0.546 3.454 18 O -0.589 6.589 19 C -0.145 4.145 20 C -0.101 4.101 21 C -0.111 4.111 22 C -0.039 4.039 23 C -0.097 4.097 24 C -0.078 4.078 25 C -0.081 4.081 26 C -0.097 4.097 27 C -0.128 4.128 28 C -0.143 4.143 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.008 0.992 38 H 0.249 0.751 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.142 0.858 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.743 -27.273 -7.505 32.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.326 5.326 3 C 0.012 3.988 4 C 0.022 3.978 5 H 0.038 0.962 6 C -0.159 4.159 7 C 0.032 3.968 8 N -0.356 5.356 9 C -0.362 4.362 10 H 0.096 0.904 11 C -0.259 4.259 12 N -0.602 5.602 13 Si 0.805 3.195 14 H -0.197 1.197 15 H -0.218 1.218 16 H -0.210 1.210 17 C 0.337 3.663 18 O -0.471 6.471 19 C -0.148 4.148 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.039 4.039 23 C -0.097 4.097 24 C -0.097 4.097 25 C -0.118 4.118 26 C -0.134 4.134 27 C -0.146 4.146 28 C -0.161 4.161 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.058 0.942 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.134 0.866 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.159 0.841 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.978 -26.936 -7.539 31.729 hybrid contribution 1.536 1.349 -0.087 2.046 sum -13.442 -25.587 -7.626 29.892 Atomic orbital electron populations 1.22917 0.76949 1.05554 1.03734 1.47721 1.08655 1.04534 1.71686 1.21373 0.96321 0.84459 0.96623 1.22559 0.94335 0.85827 0.95068 0.96226 1.23520 0.96546 0.97386 0.98421 1.22117 0.90902 0.96136 0.87665 1.46543 1.60311 1.05766 1.23005 1.19325 1.25649 0.92689 0.98499 0.90413 1.25637 1.02469 0.99783 0.98041 1.70004 1.50889 1.20356 1.18938 0.85185 0.78576 0.77885 0.77899 1.19691 1.21759 1.20997 1.18939 0.86714 0.84819 0.75844 1.90767 1.16166 1.87959 1.52160 1.19819 0.96560 0.92949 1.05489 1.22158 0.91978 0.99891 0.97853 1.21495 1.01451 0.90929 0.99019 1.19463 0.92958 0.95239 0.96254 1.20123 0.94569 0.94966 1.00050 1.20937 0.99340 0.91774 0.97679 1.20487 1.00472 0.91198 0.99681 1.20528 0.93707 0.97681 1.01509 1.23546 0.95794 0.98917 0.96313 1.21843 1.00223 0.90560 1.03486 0.89841 0.87265 0.89832 0.93710 0.88859 0.88421 0.90277 0.93767 0.97429 0.94198 0.81466 0.81829 0.86646 0.90172 0.89626 0.90896 0.88267 0.84050 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 8.50 127.77 1.09 1.99 16 2 N -0.60 -17.84 2.78 -850.37 -2.37 -20.21 16 3 C 0.14 5.18 5.27 86.38 0.46 5.64 16 4 C 0.13 5.69 4.54 45.09 0.20 5.90 16 5 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 6 C -0.12 -4.46 7.23 31.25 0.23 -4.24 16 7 C 0.16 7.79 7.39 86.43 0.64 8.43 16 8 N -0.63 -33.97 3.58 -690.81 -2.47 -36.44 16 9 C -0.23 -13.68 10.51 84.03 0.88 -12.79 16 10 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 11 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 12 N -0.95 -59.29 11.56 21.65 0.25 -59.04 16 13 Si 0.98 47.43 29.55 68.60 2.03 49.45 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 16 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 17 C 0.55 18.53 7.40 86.74 0.64 19.17 16 18 O -0.59 -25.93 16.44 -3.95 -0.06 -26.00 16 19 C -0.15 -3.79 5.52 -20.04 -0.11 -3.90 16 20 C -0.10 -1.84 7.42 22.51 0.17 -1.67 16 21 C -0.11 -1.62 9.80 22.44 0.22 -1.40 16 22 C -0.04 -0.64 5.78 -20.09 -0.12 -0.76 16 23 C -0.10 -1.91 5.67 -19.69 -0.11 -2.02 16 24 C -0.08 -1.98 9.24 22.46 0.21 -1.77 16 25 C -0.08 -1.18 5.95 29.73 0.18 -1.00 16 26 C -0.10 -1.03 6.05 29.64 0.18 -0.85 16 27 C -0.13 -1.22 10.03 24.40 0.24 -0.97 16 28 C -0.14 -1.63 9.90 23.61 0.23 -1.40 16 29 H 0.08 1.26 7.27 -2.39 -0.02 1.24 16 30 H 0.11 1.60 4.59 -2.39 -0.01 1.59 16 31 H 0.08 1.38 7.93 -2.39 -0.02 1.36 16 32 H 0.04 1.94 7.66 -2.39 -0.02 1.93 16 33 H 0.09 3.36 7.88 -2.39 -0.02 3.34 16 34 H 0.10 3.14 8.10 -2.39 -0.02 3.12 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.04 2.36 7.45 -2.39 -0.02 2.35 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.17 2.31 4.64 -2.91 -0.01 2.30 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.12 3.17 7.93 -2.91 -0.02 3.15 16 42 H 0.08 1.15 8.07 -2.39 -0.02 1.13 16 43 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.14 0.67 8.06 -2.91 -0.02 0.64 16 47 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -80.02 377.60 4.03 -75.99 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.96 Total: 11.36 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 5.69 Total: 4.88 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -4.59 Total: -115.69 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.06 Total: -26.00 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Total: -80.02 4.03 -75.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085928625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.210 kcal (2) G-P(sol) polarization free energy of solvation -80.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds