Wall clock time and date at job start Tue Mar 31 2020 14:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99949 * 2 1 4 4 C 1.52998 * 109.47090 * 277.91143 * 3 2 1 5 5 H 1.08997 * 112.96400 * 51.15238 * 4 3 2 6 6 C 1.53954 * 113.76641 * 182.82772 * 4 3 2 7 7 C 1.53951 * 86.28533 * 137.91094 * 6 4 3 8 8 N 1.47574 * 86.11830 * 336.39259 * 7 6 4 9 9 C 1.36942 * 134.49210 * 204.64136 * 8 7 6 10 10 H 1.08000 * 120.00199 * 60.79820 * 9 8 7 11 11 C 1.38812 * 119.99737 * 240.80124 * 9 8 7 12 12 N 1.31623 * 119.99695 * 186.22696 * 11 9 8 13 13 Si 1.86799 * 120.00480 * 6.22086 * 11 9 8 14 14 H 1.48499 * 109.46787 * 94.50327 * 13 11 9 15 15 H 1.48500 * 109.47405 * 214.50601 * 13 11 9 16 16 H 1.48507 * 109.46847 * 334.50913 * 13 11 9 17 17 C 1.34779 * 119.99649 * 180.02562 * 2 1 3 18 18 O 1.21574 * 119.99727 * 183.94291 * 17 2 1 19 19 C 1.47683 * 120.00555 * 3.93813 * 17 2 1 20 20 C 1.39773 * 119.95747 * 330.64933 * 19 17 2 21 21 C 1.37676 * 120.02611 * 179.97438 * 20 19 17 22 22 C 1.39495 * 119.83036 * 359.97438 * 21 20 19 23 23 C 1.39836 * 120.19104 * 359.96872 * 22 21 20 24 24 C 1.37462 * 120.00567 * 0.04921 * 23 22 21 25 25 C 1.50608 * 119.34833 * 180.10078 * 23 22 21 26 26 C 1.52713 * 109.82497 * 325.44077 * 25 23 22 27 27 C 1.50318 * 110.72878 * 50.34965 * 26 25 23 28 28 C 1.32639 * 121.07575 * 324.22980 * 27 26 25 29 29 H 1.09000 * 109.46416 * 274.38049 * 1 2 3 30 30 H 1.08996 * 109.47183 * 34.37854 * 1 2 3 31 31 H 1.09002 * 109.47066 * 154.38657 * 1 2 3 32 32 H 1.08994 * 109.46967 * 37.91809 * 3 2 1 33 33 H 1.09003 * 109.46576 * 157.91665 * 3 2 1 34 34 H 1.08996 * 113.73922 * 252.25639 * 6 4 3 35 35 H 1.08997 * 113.74132 * 23.45849 * 6 4 3 36 36 H 1.09000 * 113.76777 * 90.69982 * 7 6 4 37 37 H 1.08997 * 113.76611 * 221.97548 * 7 6 4 38 38 H 0.97002 * 119.99887 * 179.97438 * 12 11 9 39 39 H 1.07997 * 119.98516 * 359.72479 * 20 19 17 40 40 H 1.07999 * 120.08448 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.06975 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.40991 * 85.53134 * 25 23 22 43 43 H 1.09000 * 109.41393 * 205.31516 * 25 23 22 44 44 H 1.09000 * 109.21138 * 290.02696 * 26 25 23 45 45 H 1.09005 * 109.22639 * 170.67678 * 26 25 23 46 46 H 1.08001 * 119.46601 * 144.21158 * 27 26 25 47 47 H 1.07995 * 120.25245 * 180.40159 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2806 1.8096 -1.4288 5 1 1.3114 1.8475 -1.9261 6 6 3.0932 3.1113 -1.5531 7 6 3.6994 2.4933 -2.8261 8 7 3.3443 1.1864 -2.2400 9 6 3.8133 -0.0916 -2.3889 10 1 4.8402 -0.3216 -2.1463 11 6 2.9688 -1.0912 -2.8518 12 7 3.3813 -2.3408 -2.8792 13 14 1.2468 -0.6632 -3.4357 14 1 1.2578 -0.4669 -4.9076 15 1 0.3179 -1.7693 -3.0908 16 1 0.7958 0.5869 -2.7730 17 6 2.1389 -1.1673 -0.0005 18 8 3.3525 -1.1686 0.0719 19 6 1.4031 -2.4447 -0.0889 20 6 0.1070 -2.5407 0.4254 21 6 -0.5803 -3.7308 0.3433 22 6 0.0199 -4.8390 -0.2546 23 6 1.3161 -4.7437 -0.7706 24 6 2.0030 -3.5559 -0.6886 25 6 1.9450 -5.9514 -1.4143 26 6 1.4847 -7.2189 -0.6975 27 6 -0.0125 -7.2416 -0.5654 28 6 -0.6980 -6.1261 -0.3533 29 1 -0.3632 0.0785 1.0247 30 1 -0.3633 0.8481 -0.5803 31 1 -0.3633 -0.9267 -0.4443 32 1 1.6771 1.9887 0.6315 33 1 3.2039 1.1071 0.3864 34 1 2.4820 3.9938 -1.7419 35 1 3.8135 3.2576 -0.7483 36 1 3.1479 2.7314 -3.7356 37 1 4.7727 2.6555 -2.9249 38 1 2.7911 -3.0395 -3.2023 39 1 -0.3538 -1.6822 0.8911 40 1 -1.5817 -3.8061 0.7408 41 1 3.0043 -3.4812 -1.0864 42 1 1.6477 -5.9996 -2.4619 43 1 3.0302 -5.8723 -1.3500 44 1 1.9334 -7.2525 0.2953 45 1 1.8081 -8.0906 -1.2666 46 1 -0.5386 -8.1814 -0.6447 47 1 -1.7729 -6.1586 -0.2540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085928626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:59 Heat of formation + Delta-G solvation = 97.431204 kcal Electronic energy + Delta-G solvation = -29454.744219 eV Core-core repulsion = 25798.853434 eV Total energy + Delta-G solvation = -3655.890786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05224 -38.83061 -37.61014 -35.54576 -34.69710 -32.34826 -31.94696 -30.45843 -28.85967 -28.45244 -27.85215 -26.14623 -23.90350 -23.12977 -22.86941 -21.88444 -21.47297 -19.35222 -19.01538 -18.15603 -16.68459 -16.38461 -15.89750 -15.59340 -15.24434 -15.02288 -14.70724 -14.43670 -13.99691 -13.75145 -13.54341 -13.27782 -13.04147 -12.86575 -12.64581 -12.48474 -12.32872 -12.15354 -12.08433 -11.79103 -11.68344 -11.34928 -11.34481 -11.15950 -10.84364 -10.70563 -10.35629 -10.27404 -10.16267 -10.00807 -9.73545 -9.63020 -9.42304 -8.77965 -8.35826 -8.21380 -7.78086 -7.71659 -6.26204 -5.86847 -3.55198 1.05123 1.85557 2.54392 3.34849 3.46733 3.48235 3.64130 3.84169 4.48896 4.58351 4.80751 4.89704 4.92874 5.09541 5.16863 5.29629 5.31352 5.37660 5.40814 5.54073 5.57282 5.61963 5.63127 5.72562 5.81084 5.84925 5.96294 5.96615 6.05728 6.09288 6.15504 6.24198 6.28645 6.35490 6.43885 6.48093 6.52866 6.58239 6.59611 6.65689 6.76450 6.87347 7.05336 7.16558 7.17558 7.32994 7.52009 8.08096 8.21541 8.41509 8.95491 9.22617 9.75185 10.62643 11.25637 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019139 B = 0.004905 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.627830 B = 5707.046603 C = 6238.062445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.613 5.613 3 C 0.127 3.873 4 C 0.101 3.899 5 H 0.057 0.943 6 C -0.147 4.147 7 C 0.102 3.898 8 N -0.605 5.605 9 C -0.212 4.212 10 H 0.072 0.928 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.850 3.150 14 H -0.296 1.296 15 H -0.294 1.294 16 H -0.246 1.246 17 C 0.560 3.440 18 O -0.476 6.476 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.051 4.051 23 C -0.093 4.093 24 C -0.041 4.041 25 C -0.076 4.076 26 C -0.090 4.090 27 C -0.147 4.147 28 C -0.119 4.119 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.047 0.953 38 H 0.258 0.742 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.171 0.829 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.112 0.888 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -2.637 6.812 12.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.349 5.349 3 C 0.004 3.996 4 C -0.005 4.005 5 H 0.074 0.926 6 C -0.185 4.185 7 C -0.022 4.022 8 N -0.334 5.334 9 C -0.341 4.341 10 H 0.090 0.910 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.680 3.320 14 H -0.223 1.223 15 H -0.220 1.220 16 H -0.171 1.171 17 C 0.347 3.653 18 O -0.347 6.347 19 C -0.120 4.120 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.051 4.051 23 C -0.093 4.093 24 C -0.059 4.059 25 C -0.113 4.113 26 C -0.127 4.127 27 C -0.165 4.165 28 C -0.137 4.137 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.157 0.843 40 H 0.138 0.862 41 H 0.188 0.812 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.010 -3.050 6.791 11.687 hybrid contribution -1.584 0.140 -0.740 1.754 sum -10.594 -2.910 6.051 12.542 Atomic orbital electron populations 1.22402 0.81916 1.03593 1.00337 1.47425 1.05459 1.06285 1.75699 1.21606 0.97831 0.83319 0.96867 1.23277 0.94423 0.90691 0.92099 0.92626 1.23553 0.99539 0.95862 0.99579 1.22756 0.97932 0.87917 0.93604 1.46059 1.38593 1.03314 1.45429 1.18293 0.97374 0.80624 1.37786 0.91023 1.25910 0.97408 0.95650 0.95265 1.69761 1.36033 0.99615 1.47542 0.87308 0.86630 0.79085 0.79022 1.22325 1.22046 1.17113 1.17893 0.87250 0.82761 0.77378 1.90806 1.12585 1.86253 1.45072 1.20161 0.94498 0.95290 1.02021 1.21930 0.94079 0.98109 1.00069 1.20911 0.99775 0.92305 1.01757 1.18995 0.93768 0.93543 0.98814 1.19929 0.93717 0.95614 1.00050 1.21903 1.02310 0.89352 0.92355 1.20366 1.00827 0.90927 0.99173 1.20425 0.93008 0.98077 1.01223 1.23174 0.96125 0.97654 0.99553 1.21627 0.98637 0.91817 1.01661 0.92992 0.92092 0.89712 0.92285 0.89001 0.93066 0.90506 0.95250 0.93508 0.93115 0.84278 0.86161 0.81170 0.90684 0.89753 0.90756 0.90820 0.87003 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 8.29 59.85 0.50 1.46 16 2 N -0.61 -12.19 2.20 -182.75 -0.40 -12.59 16 3 C 0.13 2.43 5.41 -4.04 -0.02 2.41 16 4 C 0.10 2.07 3.19 -66.86 -0.21 1.86 16 5 H 0.06 1.20 5.67 -51.93 -0.29 0.90 16 6 C -0.15 -2.54 7.86 -25.80 -0.20 -2.74 16 7 C 0.10 2.10 8.93 -2.98 -0.03 2.07 16 8 N -0.61 -14.82 2.52 -170.74 -0.43 -15.25 16 9 C -0.21 -6.05 8.45 -15.06 -0.13 -6.18 16 10 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 11 C 0.06 1.68 3.56 -17.43 -0.06 1.62 16 12 N -0.89 -25.62 11.17 55.49 0.62 -25.00 16 13 Si 0.85 22.01 25.98 -169.99 -4.42 17.60 16 14 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 15 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 16 H -0.25 -5.92 4.17 56.52 0.24 -5.68 16 17 C 0.56 12.85 4.49 -12.40 -0.06 12.79 16 18 O -0.48 -12.76 13.77 5.30 0.07 -12.69 16 19 C -0.12 -2.47 5.51 -104.89 -0.58 -3.05 16 20 C -0.12 -2.13 7.43 -39.21 -0.29 -2.43 16 21 C -0.13 -2.03 9.80 -39.32 -0.39 -2.42 16 22 C -0.05 -0.85 5.78 -104.96 -0.61 -1.45 16 23 C -0.09 -1.73 5.67 -104.35 -0.59 -2.32 16 24 C -0.04 -0.89 8.03 -39.28 -0.32 -1.21 16 25 C -0.08 -1.19 5.95 -28.07 -0.17 -1.36 16 26 C -0.09 -1.13 6.05 -28.22 -0.17 -1.30 16 27 C -0.15 -1.78 10.03 -36.39 -0.36 -2.14 16 28 C -0.12 -1.60 9.90 -37.61 -0.37 -1.98 16 29 H 0.05 0.64 7.44 -51.93 -0.39 0.26 16 30 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 31 H 0.08 1.42 4.61 -51.93 -0.24 1.18 16 32 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.09 1.99 7.16 -51.93 -0.37 1.61 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.26 7.18 7.80 -40.82 -0.32 6.86 16 39 H 0.14 2.01 4.54 -52.49 -0.24 1.77 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.17 4.27 5.78 -52.48 -0.30 3.97 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -32.93 354.70 -10.28 -43.21 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.02 Total: 5.73 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -4.06 Total: -6.36 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.21 Total: -52.84 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.42 Total: 17.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.93 -10.28 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085928626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.642 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds