Wall clock time and date at job start Tue Mar 31 2020 14:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99949 * 2 1 4 4 C 1.52998 * 109.47090 * 277.91143 * 3 2 1 5 5 H 1.08997 * 112.96400 * 51.15238 * 4 3 2 6 6 C 1.53954 * 113.76641 * 182.82772 * 4 3 2 7 7 C 1.53951 * 86.28533 * 137.91094 * 6 4 3 8 8 N 1.47574 * 86.11830 * 336.39259 * 7 6 4 9 9 C 1.36942 * 134.49210 * 204.64136 * 8 7 6 10 10 H 1.08000 * 120.00199 * 60.79820 * 9 8 7 11 11 C 1.38812 * 119.99737 * 240.80124 * 9 8 7 12 12 N 1.31623 * 119.99695 * 186.22696 * 11 9 8 13 13 Si 1.86799 * 120.00480 * 6.22086 * 11 9 8 14 14 H 1.48499 * 109.46787 * 94.50327 * 13 11 9 15 15 H 1.48500 * 109.47405 * 214.50601 * 13 11 9 16 16 H 1.48507 * 109.46847 * 334.50913 * 13 11 9 17 17 C 1.34779 * 119.99649 * 180.02562 * 2 1 3 18 18 O 1.21574 * 119.99727 * 183.94291 * 17 2 1 19 19 C 1.47683 * 120.00555 * 3.93813 * 17 2 1 20 20 C 1.39773 * 119.95747 * 330.64933 * 19 17 2 21 21 C 1.37676 * 120.02611 * 179.97438 * 20 19 17 22 22 C 1.39495 * 119.83036 * 359.97438 * 21 20 19 23 23 C 1.39836 * 120.19104 * 359.96872 * 22 21 20 24 24 C 1.37462 * 120.00567 * 0.04921 * 23 22 21 25 25 C 1.50608 * 119.34833 * 180.10078 * 23 22 21 26 26 C 1.52713 * 109.82497 * 325.44077 * 25 23 22 27 27 C 1.50318 * 110.72878 * 50.34965 * 26 25 23 28 28 C 1.32639 * 121.07575 * 324.22980 * 27 26 25 29 29 H 1.09000 * 109.46416 * 274.38049 * 1 2 3 30 30 H 1.08996 * 109.47183 * 34.37854 * 1 2 3 31 31 H 1.09002 * 109.47066 * 154.38657 * 1 2 3 32 32 H 1.08994 * 109.46967 * 37.91809 * 3 2 1 33 33 H 1.09003 * 109.46576 * 157.91665 * 3 2 1 34 34 H 1.08996 * 113.73922 * 252.25639 * 6 4 3 35 35 H 1.08997 * 113.74132 * 23.45849 * 6 4 3 36 36 H 1.09000 * 113.76777 * 90.69982 * 7 6 4 37 37 H 1.08997 * 113.76611 * 221.97548 * 7 6 4 38 38 H 0.97002 * 119.99887 * 179.97438 * 12 11 9 39 39 H 1.07997 * 119.98516 * 359.72479 * 20 19 17 40 40 H 1.07999 * 120.08448 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.06975 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.40991 * 85.53134 * 25 23 22 43 43 H 1.09000 * 109.41393 * 205.31516 * 25 23 22 44 44 H 1.09000 * 109.21138 * 290.02696 * 26 25 23 45 45 H 1.09005 * 109.22639 * 170.67678 * 26 25 23 46 46 H 1.08001 * 119.46601 * 144.21158 * 27 26 25 47 47 H 1.07995 * 120.25245 * 180.40159 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2806 1.8096 -1.4288 5 1 1.3114 1.8475 -1.9261 6 6 3.0932 3.1113 -1.5531 7 6 3.6994 2.4933 -2.8261 8 7 3.3443 1.1864 -2.2400 9 6 3.8133 -0.0916 -2.3889 10 1 4.8402 -0.3216 -2.1463 11 6 2.9688 -1.0912 -2.8518 12 7 3.3813 -2.3408 -2.8792 13 14 1.2468 -0.6632 -3.4357 14 1 1.2578 -0.4669 -4.9076 15 1 0.3179 -1.7693 -3.0908 16 1 0.7958 0.5869 -2.7730 17 6 2.1389 -1.1673 -0.0005 18 8 3.3525 -1.1686 0.0719 19 6 1.4031 -2.4447 -0.0889 20 6 0.1070 -2.5407 0.4254 21 6 -0.5803 -3.7308 0.3433 22 6 0.0199 -4.8390 -0.2546 23 6 1.3161 -4.7437 -0.7706 24 6 2.0030 -3.5559 -0.6886 25 6 1.9450 -5.9514 -1.4143 26 6 1.4847 -7.2189 -0.6975 27 6 -0.0125 -7.2416 -0.5654 28 6 -0.6980 -6.1261 -0.3533 29 1 -0.3632 0.0785 1.0247 30 1 -0.3633 0.8481 -0.5803 31 1 -0.3633 -0.9267 -0.4443 32 1 1.6771 1.9887 0.6315 33 1 3.2039 1.1071 0.3864 34 1 2.4820 3.9938 -1.7419 35 1 3.8135 3.2576 -0.7483 36 1 3.1479 2.7314 -3.7356 37 1 4.7727 2.6555 -2.9249 38 1 2.7911 -3.0395 -3.2023 39 1 -0.3538 -1.6822 0.8911 40 1 -1.5817 -3.8061 0.7408 41 1 3.0043 -3.4812 -1.0864 42 1 1.6477 -5.9996 -2.4619 43 1 3.0302 -5.8723 -1.3500 44 1 1.9334 -7.2525 0.2953 45 1 1.8081 -8.0906 -1.2666 46 1 -0.5386 -8.1814 -0.6447 47 1 -1.7729 -6.1586 -0.2540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085928626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:58 Heat of formation + Delta-G solvation = 77.617116 kcal Electronic energy + Delta-G solvation = -29455.603423 eV Core-core repulsion = 25798.853434 eV Total energy + Delta-G solvation = -3656.749989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50136 -40.29101 -39.23081 -36.88691 -36.22974 -34.37091 -33.29436 -31.80603 -30.35441 -30.03586 -29.36575 -27.56339 -25.33030 -24.78255 -24.37424 -23.31831 -22.78497 -21.10896 -20.48537 -19.36734 -18.55288 -17.84835 -17.44971 -17.08325 -16.92053 -16.48148 -16.02493 -15.77797 -15.44831 -15.29371 -15.11538 -14.97454 -14.66195 -14.19313 -14.16307 -13.99837 -13.81200 -13.56237 -13.51226 -13.44845 -13.16871 -12.89954 -12.68665 -12.60033 -12.49242 -12.29295 -11.89840 -11.77416 -11.57265 -11.53513 -11.48517 -11.28804 -10.85631 -10.46920 -10.39689 -9.67136 -9.34464 -8.94954 -8.25126 -7.98209 -5.72160 -0.24581 0.49551 1.23284 1.29043 1.38980 1.40546 2.10715 2.40308 2.45013 3.03497 3.17692 3.25629 3.68692 3.73815 3.83198 3.95052 3.98664 4.14709 4.17949 4.22830 4.28938 4.41537 4.42818 4.47093 4.52963 4.56814 4.61729 4.72680 4.74904 4.80153 4.84795 4.88820 4.92914 5.01654 5.07543 5.10711 5.14591 5.18562 5.21300 5.33538 5.41578 5.59212 5.63599 5.72310 5.85756 5.97827 6.08952 6.11191 6.38482 6.63964 6.74045 7.55419 7.60868 8.57083 9.13220 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019139 B = 0.004905 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.627830 B = 5707.046603 C = 6238.062445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.615 5.615 3 C 0.127 3.873 4 C 0.098 3.902 5 H 0.061 0.939 6 C -0.115 4.115 7 C 0.092 3.908 8 N -0.635 5.635 9 C -0.211 4.211 10 H 0.005 0.995 11 C 0.026 3.974 12 N -0.917 5.917 13 Si 0.902 3.098 14 H -0.313 1.313 15 H -0.300 1.300 16 H -0.211 1.211 17 C 0.555 3.445 18 O -0.540 6.540 19 C -0.152 4.152 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.049 4.049 23 C -0.114 4.114 24 C -0.072 4.072 25 C -0.078 4.078 26 C -0.090 4.090 27 C -0.129 4.129 28 C -0.140 4.140 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.255 0.745 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.150 0.850 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 -1.817 8.154 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.349 5.349 3 C 0.003 3.997 4 C -0.007 4.007 5 H 0.078 0.922 6 C -0.154 4.154 7 C -0.032 4.032 8 N -0.364 5.364 9 C -0.340 4.340 10 H 0.022 0.978 11 C -0.174 4.174 12 N -0.558 5.558 13 Si 0.731 3.269 14 H -0.242 1.242 15 H -0.227 1.227 16 H -0.134 1.134 17 C 0.344 3.656 18 O -0.416 6.416 19 C -0.155 4.155 20 C -0.134 4.134 21 C -0.142 4.142 22 C -0.049 4.049 23 C -0.114 4.114 24 C -0.091 4.091 25 C -0.115 4.115 26 C -0.127 4.127 27 C -0.146 4.146 28 C -0.157 4.157 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.189 0.811 40 H 0.185 0.815 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.118 0.882 46 H 0.168 0.832 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.289 -2.179 8.149 16.593 hybrid contribution 0.148 -0.168 -1.134 1.156 sum -14.141 -2.347 7.015 15.958 Atomic orbital electron populations 1.22724 0.78993 1.03950 1.03479 1.47579 1.07402 1.05487 1.74404 1.21646 0.97031 0.84123 0.96856 1.23432 0.93555 0.91752 0.92004 0.92226 1.23349 0.98895 0.95742 0.97396 1.22962 0.98284 0.86137 0.95780 1.46277 1.39935 1.02869 1.47303 1.17662 0.95066 0.83256 1.38038 0.97758 1.26271 1.00364 0.95115 0.95607 1.69911 1.37062 1.00406 1.48469 0.86500 0.82999 0.80022 0.77348 1.24154 1.22695 1.13433 1.18324 0.86759 0.84268 0.76280 1.90767 1.15316 1.87257 1.48291 1.20185 0.96557 0.94275 1.04526 1.22269 0.92217 1.00026 0.98849 1.21462 1.01370 0.91051 1.00306 1.19479 0.92706 0.95753 0.96991 1.20193 0.95144 0.95167 1.00901 1.21581 1.01035 0.91694 0.94741 1.20387 0.99764 0.92187 0.99179 1.20474 0.94170 0.96839 1.01190 1.23527 0.95370 0.99028 0.96710 1.21856 1.00160 0.90266 1.03430 0.88496 0.90249 0.90613 0.87070 0.92600 0.88544 0.89773 0.94174 0.94019 0.93565 0.81092 0.81475 0.86040 0.91340 0.91719 0.90646 0.88204 0.83206 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.38 8.29 127.77 1.06 2.44 16 2 N -0.61 -23.75 2.20 -850.37 -1.87 -25.62 16 3 C 0.13 4.65 5.41 86.38 0.47 5.11 16 4 C 0.10 3.80 3.19 45.10 0.14 3.94 16 5 H 0.06 2.31 5.67 -2.39 -0.01 2.30 16 6 C -0.12 -3.62 7.86 31.26 0.25 -3.38 16 7 C 0.09 3.71 8.93 86.48 0.77 4.48 16 8 N -0.63 -31.70 2.52 -694.11 -1.75 -33.44 16 9 C -0.21 -12.90 8.45 84.03 0.71 -12.19 16 10 H 0.00 0.36 8.06 -2.91 -0.02 0.33 16 11 C 0.03 1.55 3.56 84.86 0.30 1.85 16 12 N -0.92 -57.73 11.17 21.65 0.24 -57.49 16 13 Si 0.90 46.65 25.98 68.60 1.78 48.43 16 14 H -0.31 -16.93 7.11 99.48 0.71 -16.22 16 15 H -0.30 -15.65 7.11 99.48 0.71 -14.95 16 16 H -0.21 -9.52 4.17 99.48 0.42 -9.11 16 17 C 0.55 26.55 4.49 86.74 0.39 26.94 16 18 O -0.54 -31.67 13.77 -3.95 -0.05 -31.72 16 19 C -0.15 -6.68 5.51 -20.04 -0.11 -6.79 16 20 C -0.12 -3.78 7.43 22.51 0.17 -3.61 16 21 C -0.12 -3.50 9.80 22.44 0.22 -3.28 16 22 C -0.05 -1.54 5.78 -20.08 -0.12 -1.66 16 23 C -0.11 -4.40 5.67 -19.69 -0.11 -4.52 16 24 C -0.07 -3.38 8.03 22.46 0.18 -3.20 16 25 C -0.08 -2.59 5.95 29.72 0.18 -2.42 16 26 C -0.09 -2.12 6.05 29.63 0.18 -1.94 16 27 C -0.13 -2.63 10.03 24.40 0.24 -2.38 16 28 C -0.14 -3.21 9.90 23.61 0.23 -2.98 16 29 H 0.10 1.84 7.44 -2.39 -0.02 1.82 16 30 H 0.08 1.92 7.99 -2.39 -0.02 1.90 16 31 H 0.08 2.27 4.61 -2.39 -0.01 2.26 16 32 H 0.11 2.91 8.13 -2.39 -0.02 2.89 16 33 H 0.06 2.48 7.16 -2.39 -0.02 2.46 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.25 15.49 7.80 -92.71 -0.72 14.76 16 39 H 0.17 4.27 4.54 -2.91 -0.01 4.26 16 40 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.12 6.91 5.78 -2.91 -0.02 6.89 16 42 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.06 2.31 8.06 -2.39 -0.02 2.30 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 47 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -84.40 354.70 4.24 -80.16 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.73 Total: 23.25 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.15 Total: -3.57 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -3.37 Total: -116.55 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.05 Total: -31.72 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.78 Total: 48.43 kcal Total: -84.40 4.24 -80.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085928626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.775 kcal (2) G-P(sol) polarization free energy of solvation -84.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds