Wall clock time and date at job start Tue Mar 31 2020 15:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32992 * 125.39749 * 2 1 4 4 C 1.31747 * 109.76064 * 179.97438 * 3 2 1 5 5 C 1.47983 * 126.10109 * 179.97438 * 4 3 2 6 6 C 1.39502 * 120.13805 * 161.90024 * 5 4 3 7 7 C 1.37974 * 119.86170 * 179.76908 * 6 5 4 8 8 C 1.38348 * 120.13796 * 0.48726 * 7 6 5 9 9 C 1.38347 * 120.27672 * 359.78592 * 8 7 6 10 10 C 1.37977 * 120.13556 * 359.95836 * 9 8 7 11 11 N 1.35256 * 107.79735 * 0.02562 * 4 3 2 12 12 C 1.46498 * 126.87481 * 179.97438 * 11 4 3 13 13 N 1.46502 * 109.47240 * 187.44467 * 12 11 4 14 14 C 1.36938 * 119.99945 * 264.16833 * 13 12 11 15 15 H 1.08002 * 119.99959 * 207.93814 * 14 13 12 16 16 C 1.38813 * 119.99817 * 27.94352 * 14 13 12 17 17 N 1.31615 * 119.99919 * 354.54325 * 16 14 13 18 18 Si 1.86799 * 119.99749 * 174.54791 * 16 14 13 19 19 H 1.48495 * 109.47286 * 89.99816 * 18 16 14 20 20 H 1.48500 * 109.46873 * 210.00111 * 18 16 14 21 21 H 1.48499 * 109.47164 * 329.99493 * 18 16 14 22 22 C 1.46498 * 119.99723 * 84.17451 * 13 12 11 23 23 C 1.55242 * 110.46305 * 229.92091 * 22 13 12 24 24 C 1.54893 * 102.58589 * 203.39261 * 23 22 13 25 25 C 1.54274 * 104.31286 * 37.93238 * 24 23 22 26 26 C 1.53869 * 106.59702 * 336.32518 * 25 24 23 27 27 N 1.30802 * 125.39535 * 180.29136 * 2 1 3 28 28 H 1.08997 * 109.47421 * 89.97532 * 1 2 3 29 29 H 1.09008 * 109.46877 * 209.97372 * 1 2 3 30 30 H 1.09001 * 109.47200 * 329.97277 * 1 2 3 31 31 H 1.08002 * 120.06367 * 0.02562 * 6 5 4 32 32 H 1.08006 * 119.93600 * 180.25626 * 7 6 5 33 33 H 1.07999 * 119.86220 * 179.76322 * 8 7 6 34 34 H 1.07995 * 119.93079 * 179.97438 * 9 8 7 35 35 H 1.07994 * 120.07066 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47163 * 67.44434 * 12 11 4 37 37 H 1.08999 * 109.47696 * 307.44559 * 12 11 4 38 38 H 0.97006 * 119.99946 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.43549 * 352.56683 * 22 13 12 40 40 H 1.09001 * 110.89913 * 85.10579 * 23 22 13 41 41 H 1.09002 * 110.76483 * 321.62001 * 23 22 13 42 42 H 1.08993 * 110.48778 * 279.18919 * 24 23 22 43 43 H 1.09005 * 110.48557 * 156.67029 * 24 23 22 44 44 H 1.09001 * 110.03140 * 95.60449 * 25 24 23 45 45 H 1.08996 * 110.02825 * 216.98927 * 25 24 23 46 46 H 1.08996 * 110.03889 * 119.28515 * 26 25 24 47 47 H 1.09003 * 110.03067 * 240.67097 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2773 1.0841 0.0000 4 6 3.5461 0.7290 0.0006 5 6 4.7080 1.6454 0.0002 6 6 5.9680 1.1790 0.3756 7 6 7.0483 2.0372 0.3687 8 6 6.8821 3.3602 0.0001 9 6 5.6340 3.8303 -0.3679 10 6 4.5468 2.9807 -0.3700 11 7 3.5970 -0.6226 0.0003 12 6 4.8013 -1.4569 0.0003 13 7 4.4227 -2.8608 -0.1789 14 6 4.2748 -3.6747 0.9123 15 1 4.4447 -4.7373 0.8205 16 6 3.9064 -3.1340 2.1366 17 7 3.8039 -1.8292 2.2756 18 14 3.5563 -4.2582 3.5867 19 1 4.8104 -4.4903 4.3472 20 1 2.5496 -3.6223 4.4742 21 1 3.0303 -5.5556 3.0915 22 6 4.2027 -3.3939 -1.5256 23 6 2.8482 -4.1492 -1.5956 24 6 3.0590 -5.1099 -2.7923 25 6 4.5283 -5.5623 -2.6640 26 6 5.2554 -4.4713 -1.8586 27 7 2.2646 -1.0663 -0.0054 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 6.0982 0.1472 0.6672 32 1 8.0252 1.6763 0.6551 33 1 7.7301 4.0290 -0.0001 34 1 5.5105 4.8642 -0.6542 35 1 3.5731 3.3486 -0.6578 36 1 5.3244 -1.3399 0.9494 37 1 5.4558 -1.1502 -0.8155 38 1 3.5461 -1.4513 3.1310 39 1 4.2322 -2.5910 -2.2623 40 1 2.0280 -3.4593 -1.7941 41 1 2.6701 -4.7092 -0.6775 42 1 2.9023 -4.5854 -3.7348 43 1 2.3884 -5.9659 -2.7170 44 1 4.5811 -6.5141 -2.1355 45 1 4.9768 -5.6591 -3.6527 46 1 5.6611 -4.8935 -0.9393 47 1 6.0576 -4.0382 -2.4561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116112434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:04 Heat of formation + Delta-G solvation = 137.771507 kcal Electronic energy + Delta-G solvation = -28828.040524 eV Core-core repulsion = 25206.191776 eV Total energy + Delta-G solvation = -3621.848748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.82987 -38.56032 -37.85194 -34.95408 -32.72798 -31.60602 -30.93761 -30.59176 -29.52832 -28.00742 -27.93215 -26.59952 -25.33669 -23.21705 -22.39846 -21.87196 -19.91008 -19.80620 -19.40324 -19.18335 -16.90659 -16.37310 -15.87649 -15.80637 -14.97598 -14.74682 -14.65295 -14.29809 -14.12797 -13.53955 -13.48125 -13.12690 -12.94493 -12.69195 -12.68588 -12.43965 -12.23088 -11.87469 -11.55508 -11.36452 -11.21728 -11.07178 -10.92249 -10.89131 -10.81345 -10.67660 -10.48641 -10.41418 -10.28489 -10.05435 -9.97549 -9.58807 -9.21714 -8.96517 -8.70784 -8.67350 -8.15846 -7.66284 -7.06698 -5.99674 -3.48353 1.31558 1.65830 3.07473 3.28441 3.37672 3.38583 3.67203 3.84893 4.29707 4.32375 4.75687 4.88932 5.16027 5.18073 5.21354 5.29638 5.33416 5.38093 5.48487 5.57858 5.67918 5.72661 5.86927 5.96513 6.02754 6.11362 6.13812 6.15240 6.16751 6.24529 6.28969 6.34743 6.35626 6.42648 6.47938 6.56169 6.65555 6.68318 6.70844 6.81229 6.88693 6.97507 7.07248 7.17689 7.19399 7.50760 7.63379 7.71935 8.12019 8.17828 8.95313 9.33868 9.58834 10.03265 11.07199 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.004904 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.774071 B = 5708.112390 C = 5971.441109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C 0.157 3.843 3 N -0.551 5.551 4 C 0.261 3.739 5 C 0.003 3.997 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.121 4.121 9 C -0.127 4.127 10 C -0.083 4.083 11 N -0.295 5.295 12 C 0.385 3.615 13 N -0.552 5.552 14 C -0.263 4.263 15 H 0.078 0.922 16 C 0.022 3.978 17 N -0.890 5.890 18 Si 0.906 3.094 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.170 3.830 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.138 4.138 27 N -0.241 5.241 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.137 0.863 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.043 0.957 38 H 0.257 0.743 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 4.578 -7.061 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.124 4.124 3 N -0.282 5.282 4 C -0.013 4.013 5 C 0.000 4.000 6 C -0.129 4.129 7 C -0.139 4.139 8 C -0.140 4.140 9 C -0.145 4.145 10 C -0.103 4.103 11 N -0.090 5.090 12 C 0.177 3.823 13 N -0.269 5.269 14 C -0.392 4.392 15 H 0.095 0.905 16 C -0.179 4.179 17 N -0.533 5.533 18 Si 0.736 3.264 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.062 3.938 23 C -0.157 4.157 24 C -0.165 4.165 25 C -0.156 4.156 26 C -0.177 4.177 27 N -0.073 5.073 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.389 4.086 -6.904 8.709 hybrid contribution -0.135 -0.462 1.092 1.193 sum 3.254 3.623 -5.812 7.583 Atomic orbital electron populations 1.19771 0.86072 1.02496 1.01823 1.23831 0.97403 0.86832 1.04319 1.70135 0.99505 1.31782 1.26797 1.21759 0.92228 0.84282 1.02997 1.17685 0.89772 0.92205 1.00351 1.21693 0.91683 1.01339 0.98145 1.21016 0.98576 0.93646 1.00635 1.21178 0.97235 0.95739 0.99841 1.21029 0.92749 0.99498 1.01248 1.21198 0.99241 0.91997 0.97859 1.52559 1.06686 1.03846 1.45923 1.21552 0.81086 0.80015 0.99617 1.44182 1.75706 1.05057 1.01917 1.19001 1.42045 0.91300 0.86815 0.90452 1.25079 0.98169 0.95795 0.98828 1.69849 1.49630 1.09365 1.24423 0.86250 0.77782 0.80127 0.82240 1.21523 1.21676 1.20427 1.21367 0.92645 0.93506 0.86237 1.22755 0.98076 0.97497 0.97417 1.22336 0.96110 0.99133 0.98912 1.22034 0.95832 0.98706 0.99026 1.22602 0.98359 0.96956 0.99787 1.78058 0.87331 1.21337 1.20613 0.91647 0.91182 0.91178 0.84553 0.85887 0.86355 0.86063 0.85123 0.86468 0.93943 0.93253 0.93161 0.92485 0.90251 0.92787 0.92710 0.92565 0.93113 0.90755 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.74 10.51 36.00 0.38 -0.36 16 2 C 0.16 3.54 8.12 -157.00 -1.27 2.27 16 3 N -0.55 -12.42 10.97 -8.66 -0.10 -12.52 16 4 C 0.26 5.71 7.65 -155.45 -1.19 4.53 16 5 C 0.00 0.05 5.86 -104.96 -0.62 -0.57 16 6 C -0.11 -1.82 8.98 -39.21 -0.35 -2.17 16 7 C -0.12 -1.64 10.03 -39.64 -0.40 -2.03 16 8 C -0.12 -1.48 10.04 -39.50 -0.40 -1.88 16 9 C -0.13 -1.64 10.03 -39.64 -0.40 -2.04 16 10 C -0.08 -1.31 9.70 -39.21 -0.38 -1.69 16 11 N -0.29 -6.78 2.88 -62.05 -0.18 -6.95 16 12 C 0.39 8.45 4.05 -63.75 -0.26 8.19 16 13 N -0.55 -12.35 2.35 -167.24 -0.39 -12.74 16 14 C -0.26 -6.43 7.68 -15.06 -0.12 -6.54 16 15 H 0.08 1.89 7.16 -52.49 -0.38 1.52 16 16 C 0.02 0.55 5.36 -17.43 -0.09 0.46 16 17 N -0.89 -23.60 8.76 55.49 0.49 -23.12 16 18 Si 0.91 21.04 29.56 -169.99 -5.02 16.02 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.17 3.33 3.40 -66.08 -0.22 3.10 16 23 C -0.12 -2.28 6.39 -24.54 -0.16 -2.43 16 24 C -0.13 -1.97 6.82 -25.07 -0.17 -2.14 16 25 C -0.12 -1.76 6.80 -25.61 -0.17 -1.93 16 26 C -0.14 -2.35 6.42 -25.61 -0.16 -2.51 16 27 N -0.24 -5.87 11.55 32.39 0.37 -5.50 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.14 2.41 4.52 -52.49 -0.24 2.17 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 2.06 7.95 -52.49 -0.42 1.64 16 36 H 0.12 2.77 4.93 -51.93 -0.26 2.51 16 37 H 0.04 0.85 7.62 -51.93 -0.40 0.45 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.05 1.00 7.98 -51.93 -0.41 0.59 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.71 6.99 -51.93 -0.36 1.35 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.38 6.92 -51.93 -0.36 1.02 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -28.81 375.06 -12.19 -40.99 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.03 Total: 5.91 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -5.98 Total: -7.74 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.19 Total: -60.83 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.81 -12.19 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116112434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.766 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds