Wall clock time and date at job start Tue Mar 31 2020 15:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32992 * 125.39749 * 2 1 4 4 C 1.31747 * 109.76064 * 179.97438 * 3 2 1 5 5 C 1.47983 * 126.10109 * 179.97438 * 4 3 2 6 6 C 1.39502 * 120.13805 * 161.90024 * 5 4 3 7 7 C 1.37974 * 119.86170 * 179.76908 * 6 5 4 8 8 C 1.38348 * 120.13796 * 0.48726 * 7 6 5 9 9 C 1.38347 * 120.27672 * 359.78592 * 8 7 6 10 10 C 1.37977 * 120.13556 * 359.95836 * 9 8 7 11 11 N 1.35256 * 107.79735 * 0.02562 * 4 3 2 12 12 C 1.46498 * 126.87481 * 179.97438 * 11 4 3 13 13 N 1.46502 * 109.47240 * 187.44467 * 12 11 4 14 14 C 1.36938 * 119.99945 * 264.16833 * 13 12 11 15 15 H 1.08002 * 119.99959 * 207.93814 * 14 13 12 16 16 C 1.38813 * 119.99817 * 27.94352 * 14 13 12 17 17 N 1.31615 * 119.99919 * 354.54325 * 16 14 13 18 18 Si 1.86799 * 119.99749 * 174.54791 * 16 14 13 19 19 H 1.48495 * 109.47286 * 89.99816 * 18 16 14 20 20 H 1.48500 * 109.46873 * 210.00111 * 18 16 14 21 21 H 1.48499 * 109.47164 * 329.99493 * 18 16 14 22 22 C 1.46498 * 119.99723 * 84.17451 * 13 12 11 23 23 C 1.55242 * 110.46305 * 229.92091 * 22 13 12 24 24 C 1.54893 * 102.58589 * 203.39261 * 23 22 13 25 25 C 1.54274 * 104.31286 * 37.93238 * 24 23 22 26 26 C 1.53869 * 106.59702 * 336.32518 * 25 24 23 27 27 N 1.30802 * 125.39535 * 180.29136 * 2 1 3 28 28 H 1.08997 * 109.47421 * 89.97532 * 1 2 3 29 29 H 1.09008 * 109.46877 * 209.97372 * 1 2 3 30 30 H 1.09001 * 109.47200 * 329.97277 * 1 2 3 31 31 H 1.08002 * 120.06367 * 0.02562 * 6 5 4 32 32 H 1.08006 * 119.93600 * 180.25626 * 7 6 5 33 33 H 1.07999 * 119.86220 * 179.76322 * 8 7 6 34 34 H 1.07995 * 119.93079 * 179.97438 * 9 8 7 35 35 H 1.07994 * 120.07066 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47163 * 67.44434 * 12 11 4 37 37 H 1.08999 * 109.47696 * 307.44559 * 12 11 4 38 38 H 0.97006 * 119.99946 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.43549 * 352.56683 * 22 13 12 40 40 H 1.09001 * 110.89913 * 85.10579 * 23 22 13 41 41 H 1.09002 * 110.76483 * 321.62001 * 23 22 13 42 42 H 1.08993 * 110.48778 * 279.18919 * 24 23 22 43 43 H 1.09005 * 110.48557 * 156.67029 * 24 23 22 44 44 H 1.09001 * 110.03140 * 95.60449 * 25 24 23 45 45 H 1.08996 * 110.02825 * 216.98927 * 25 24 23 46 46 H 1.08996 * 110.03889 * 119.28515 * 26 25 24 47 47 H 1.09003 * 110.03067 * 240.67097 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2773 1.0841 0.0000 4 6 3.5461 0.7290 0.0006 5 6 4.7080 1.6454 0.0002 6 6 5.9680 1.1790 0.3756 7 6 7.0483 2.0372 0.3687 8 6 6.8821 3.3602 0.0001 9 6 5.6340 3.8303 -0.3679 10 6 4.5468 2.9807 -0.3700 11 7 3.5970 -0.6226 0.0003 12 6 4.8013 -1.4569 0.0003 13 7 4.4227 -2.8608 -0.1789 14 6 4.2748 -3.6747 0.9123 15 1 4.4447 -4.7373 0.8205 16 6 3.9064 -3.1340 2.1366 17 7 3.8039 -1.8292 2.2756 18 14 3.5563 -4.2582 3.5867 19 1 4.8104 -4.4903 4.3472 20 1 2.5496 -3.6223 4.4742 21 1 3.0303 -5.5556 3.0915 22 6 4.2027 -3.3939 -1.5256 23 6 2.8482 -4.1492 -1.5956 24 6 3.0590 -5.1099 -2.7923 25 6 4.5283 -5.5623 -2.6640 26 6 5.2554 -4.4713 -1.8586 27 7 2.2646 -1.0663 -0.0054 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 6.0982 0.1472 0.6672 32 1 8.0252 1.6763 0.6551 33 1 7.7301 4.0290 -0.0001 34 1 5.5105 4.8642 -0.6542 35 1 3.5731 3.3486 -0.6578 36 1 5.3244 -1.3399 0.9494 37 1 5.4558 -1.1502 -0.8155 38 1 3.5461 -1.4513 3.1310 39 1 4.2322 -2.5910 -2.2623 40 1 2.0280 -3.4593 -1.7941 41 1 2.6701 -4.7092 -0.6775 42 1 2.9023 -4.5854 -3.7348 43 1 2.3884 -5.9659 -2.7170 44 1 4.5811 -6.5141 -2.1355 45 1 4.9768 -5.6591 -3.6527 46 1 5.6611 -4.8935 -0.9393 47 1 6.0576 -4.0382 -2.4561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116112434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:03 Heat of formation + Delta-G solvation = 125.851415 kcal Electronic energy + Delta-G solvation = -28828.557418 eV Core-core repulsion = 25206.191776 eV Total energy + Delta-G solvation = -3622.365642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.48499 -39.74167 -39.39278 -36.59764 -34.32052 -33.21549 -32.60629 -31.79261 -30.94629 -29.52576 -29.39439 -28.18753 -27.07475 -24.72593 -23.73327 -23.26024 -21.35672 -21.31555 -20.89935 -20.80931 -18.57261 -17.79991 -17.54405 -17.19757 -16.55033 -16.26548 -16.12102 -15.86947 -15.54867 -15.08658 -14.77429 -14.63332 -14.18595 -14.10649 -14.03919 -13.97708 -13.60481 -13.26580 -13.19301 -13.04978 -12.94619 -12.64435 -12.58027 -12.43237 -12.23337 -12.11093 -11.96317 -11.94792 -11.80612 -11.68703 -11.33446 -11.12444 -10.81330 -10.62649 -10.45977 -9.89551 -9.81331 -9.16657 -8.88114 -7.95515 -5.42861 0.06338 0.52610 1.39003 1.43765 1.49000 1.49545 2.03666 2.30206 2.42435 2.99620 3.20753 3.30891 3.32549 3.92728 3.93858 3.98242 4.03865 4.15161 4.19010 4.20558 4.33547 4.41058 4.52991 4.60762 4.66325 4.72077 4.78030 4.82546 4.86656 4.92592 4.92678 4.93745 5.04932 5.08558 5.14950 5.18828 5.23311 5.26741 5.49881 5.53161 5.55696 5.60146 5.61310 5.63743 5.65209 5.86146 6.04454 6.10781 6.27364 6.46040 7.04495 7.58624 7.76460 8.14843 9.07640 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.004904 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.774071 B = 5708.112390 C = 5971.441109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C 0.144 3.856 3 N -0.569 5.569 4 C 0.260 3.740 5 C -0.036 4.036 6 C -0.123 4.123 7 C -0.119 4.119 8 C -0.103 4.103 9 C -0.118 4.118 10 C -0.091 4.091 11 N -0.306 5.306 12 C 0.395 3.605 13 N -0.563 5.563 14 C -0.251 4.251 15 H 0.076 0.924 16 C -0.024 4.024 17 N -0.904 5.904 18 Si 0.956 3.044 19 H -0.283 1.283 20 H -0.309 1.309 21 H -0.275 1.275 22 C 0.165 3.835 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.111 4.111 26 C -0.130 4.130 27 N -0.283 5.283 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.239 0.761 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 5.487 -8.663 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.137 4.137 3 N -0.301 5.301 4 C -0.014 4.014 5 C -0.039 4.039 6 C -0.143 4.143 7 C -0.136 4.136 8 C -0.122 4.122 9 C -0.136 4.136 10 C -0.111 4.111 11 N -0.100 5.100 12 C 0.187 3.813 13 N -0.281 5.281 14 C -0.381 4.381 15 H 0.094 0.906 16 C -0.221 4.221 17 N -0.548 5.548 18 Si 0.786 3.214 19 H -0.210 1.210 20 H -0.236 1.236 21 H -0.200 1.200 22 C 0.059 3.941 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.149 4.149 26 C -0.169 4.169 27 N -0.114 5.114 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.168 0.832 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.100 4.965 -8.530 11.109 hybrid contribution -0.580 -0.608 1.540 1.754 sum 4.520 4.357 -6.990 9.395 Atomic orbital electron populations 1.19894 0.83196 1.03075 1.03472 1.24714 0.99308 0.86528 1.03167 1.70179 0.99954 1.31845 1.28089 1.22534 0.93275 0.84433 1.01116 1.17855 0.89280 0.92989 1.03753 1.21641 0.92267 1.01181 0.99215 1.21353 0.98583 0.94000 0.99697 1.21684 0.98227 0.95438 0.96827 1.21438 0.91915 1.00615 0.99623 1.21279 1.00287 0.91338 0.98180 1.52350 1.06412 1.04399 1.46852 1.21390 0.80975 0.79855 0.99096 1.44295 1.76160 1.05093 1.02524 1.19081 1.40289 0.91357 0.87329 0.90637 1.25596 0.99209 0.96603 1.00727 1.70053 1.51197 1.10203 1.23350 0.85458 0.77095 0.78790 0.80048 1.21002 1.23632 1.20043 1.21529 0.93900 0.94033 0.84686 1.22617 0.97170 0.97604 0.97960 1.22287 0.97023 0.98679 0.97497 1.22013 0.94908 0.97840 1.00145 1.22498 0.98078 0.96681 0.99664 1.77958 0.88128 1.22731 1.22631 0.89387 0.91348 0.89704 0.86547 0.83228 0.82059 0.82448 0.85765 0.88595 0.92351 0.95097 0.93684 0.94575 0.93134 0.91318 0.91316 0.92028 0.90315 0.92557 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.32 10.51 71.24 0.75 -0.57 16 2 C 0.14 6.74 8.12 138.68 1.13 7.87 16 3 N -0.57 -26.61 10.97 -181.32 -1.99 -28.60 16 4 C 0.26 11.89 7.65 136.86 1.05 12.94 16 5 C -0.04 -1.36 5.86 -20.08 -0.12 -1.48 16 6 C -0.12 -4.14 8.98 22.51 0.20 -3.94 16 7 C -0.12 -2.93 10.03 22.23 0.22 -2.71 16 8 C -0.10 -2.09 10.04 22.32 0.22 -1.87 16 9 C -0.12 -2.65 10.03 22.23 0.22 -2.43 16 10 C -0.09 -2.81 9.70 22.51 0.22 -2.59 16 11 N -0.31 -14.75 2.88 -350.21 -1.01 -15.76 16 12 C 0.39 18.14 4.05 170.96 0.69 18.83 16 13 N -0.56 -26.09 2.35 -683.02 -1.61 -27.70 16 14 C -0.25 -12.68 7.68 84.03 0.65 -12.03 16 15 H 0.08 3.79 7.16 -2.91 -0.02 3.76 16 16 C -0.02 -1.27 5.36 84.86 0.45 -0.81 16 17 N -0.90 -50.37 8.76 21.65 0.19 -50.18 16 18 Si 0.96 44.82 29.56 68.60 2.03 46.85 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C 0.16 6.54 3.40 46.19 0.16 6.70 16 23 C -0.11 -4.47 6.39 32.01 0.20 -4.27 16 24 C -0.12 -3.42 6.82 31.67 0.22 -3.20 16 25 C -0.11 -3.03 6.80 31.32 0.21 -2.82 16 26 C -0.13 -4.29 6.42 31.32 0.20 -4.09 16 27 N -0.28 -14.41 11.55 -51.43 -0.59 -15.01 16 28 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.12 4.34 4.52 -2.91 -0.01 4.32 16 32 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.12 3.92 7.95 -2.91 -0.02 3.90 16 36 H 0.10 4.81 4.93 -2.39 -0.01 4.80 16 37 H 0.06 2.43 7.62 -2.39 -0.02 2.41 16 38 H 0.24 13.87 8.31 -92.70 -0.77 13.10 16 39 H 0.04 1.82 7.98 -2.39 -0.02 1.80 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 2.24 6.99 -2.39 -0.02 2.23 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 2.06 6.92 -2.39 -0.02 2.05 16 47 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -66.56 375.06 4.66 -61.89 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.97 Total: 24.97 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 6.68 Total: 3.53 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -5.01 Total: -137.24 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.56 4.66 -61.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116112434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.745 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds