Wall clock time and date at job start Tue Mar 31 2020 14:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00086 * 2 1 4 4 C 1.38740 * 120.05712 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94681 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05338 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94136 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47212 * 90.00102 * 7 6 5 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 N 1.46507 * 109.47485 * 179.97438 * 9 8 7 11 11 C 1.46499 * 120.00102 * 270.00258 * 10 9 8 12 12 C 1.38825 * 119.99433 * 90.00089 * 10 9 8 13 13 C 1.39792 * 119.58733 * 4.73052 * 12 10 9 14 14 C 1.38596 * 119.48880 * 179.78937 * 13 12 10 15 15 C 1.38392 * 118.68149 * 0.47829 * 14 13 12 16 16 C 1.40557 * 119.14883 * 359.74272 * 15 14 13 17 17 C 1.41307 * 119.78590 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00187 * 0.02562 * 17 16 15 19 19 C 1.40023 * 120.00184 * 180.02562 * 17 16 15 20 20 N 1.30747 * 119.99945 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99944 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47517 * 60.00088 * 21 19 17 23 23 H 1.48505 * 109.46874 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47023 * 299.99639 * 21 19 17 25 25 N 1.31959 * 119.57826 * 185.00027 * 12 10 9 26 26 C 1.38261 * 120.11222 * 0.25270 * 6 5 4 27 27 C 1.38144 * 120.05633 * 359.45047 * 26 6 5 28 28 H 1.09000 * 109.47106 * 300.00137 * 1 2 3 29 29 H 1.09000 * 109.47348 * 59.99680 * 1 2 3 30 30 H 1.08993 * 109.47158 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.02343 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.97195 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47060 * 210.00157 * 7 6 5 34 34 H 1.09001 * 109.47380 * 330.00244 * 7 6 5 35 35 H 1.09002 * 109.47153 * 299.99998 * 8 7 6 36 36 H 1.08998 * 109.47533 * 59.99628 * 8 7 6 37 37 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 38 38 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 39 39 H 1.09000 * 109.47121 * 89.99670 * 11 10 9 40 40 H 1.09001 * 109.46705 * 210.00337 * 11 10 9 41 41 H 1.09004 * 109.46774 * 329.99905 * 11 10 9 42 42 H 1.08000 * 120.25656 * 359.97438 * 13 12 10 43 43 H 1.08001 * 120.65825 * 180.21944 * 14 13 12 44 44 H 1.07999 * 120.42512 * 179.77046 * 15 14 13 45 45 H 0.96996 * 119.99915 * 180.02562 * 20 19 17 46 46 H 1.07999 * 119.97190 * 179.70663 * 26 6 5 47 47 H 1.08001 * 120.03140 * 180.25189 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2171 5.4745 -1.4393 9 6 4.9111 6.8379 -1.4382 10 7 5.1328 7.2743 -2.8191 11 6 6.3742 6.9169 -3.5099 12 6 4.1663 8.0265 -3.4728 13 6 3.0302 8.4469 -2.7752 14 6 2.0687 9.2014 -3.4287 15 6 2.2603 9.5089 -4.7644 16 6 3.4215 9.0530 -5.4120 17 6 3.6311 9.3596 -6.7754 18 1 2.9005 9.9428 -7.3163 19 6 4.7860 8.9073 -7.4253 20 7 5.6702 8.2008 -6.7707 21 14 5.0633 9.3132 -9.2275 22 1 5.1076 10.7872 -9.4018 23 1 6.3499 8.7224 -9.6756 24 1 3.9526 8.7521 -10.0379 25 7 4.3292 8.3310 -4.7464 26 6 1.9212 3.6047 0.0080 27 6 1.2916 2.3751 0.0012 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 4.0208 0.3799 -0.0014 32 1 5.1346 2.5749 -0.0008 33 1 3.3584 5.7457 0.5177 34 1 4.9444 4.9376 0.5160 35 1 4.8448 4.7472 -1.9542 36 1 3.2590 5.5554 -1.9527 37 1 4.2830 7.5649 -0.9234 38 1 5.8693 6.7574 -0.9248 39 1 6.2426 5.9651 -4.0245 40 1 6.6219 7.6913 -4.2359 41 1 7.1818 6.8284 -2.7832 42 1 2.9041 8.1882 -1.7342 43 1 1.1854 9.5392 -2.9071 44 1 1.5273 10.0920 -5.3020 45 1 6.4704 7.8878 -7.2208 46 1 1.3343 4.5114 0.0140 47 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:34 Heat of formation + Delta-G solvation = 24.825742 kcal Electronic energy + Delta-G solvation = -26496.231035 eV Core-core repulsion = 22837.191840 eV Total energy + Delta-G solvation = -3659.039195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.27250 -38.51306 -37.91477 -36.03414 -33.68486 -33.15996 -31.20308 -30.56669 -29.77797 -29.04056 -27.73507 -26.50130 -25.22090 -23.95917 -22.77521 -22.07819 -21.11643 -20.73915 -19.61651 -18.31003 -17.39813 -16.47685 -16.09013 -15.93637 -15.53615 -14.93496 -14.75239 -14.48485 -14.34216 -14.13678 -13.96847 -13.74235 -13.44253 -13.10727 -12.99129 -12.76608 -12.28215 -12.17448 -12.12537 -11.80359 -11.68764 -11.44916 -11.17861 -11.14917 -11.00310 -10.98318 -10.90434 -10.83900 -10.60480 -10.41232 -10.21867 -9.88751 -9.38511 -9.09908 -8.64523 -8.16225 -7.85761 -7.44086 -6.35456 -6.29456 -4.43925 1.24338 1.32571 2.91225 3.08388 3.11632 3.14472 3.27001 3.32542 3.64219 4.00265 4.06671 4.63134 4.73409 4.81824 4.85754 4.88262 4.88992 5.12890 5.18635 5.28169 5.34561 5.46881 5.48984 5.64099 5.70783 5.88188 5.93530 5.95793 5.98702 6.10801 6.17966 6.21512 6.27442 6.31104 6.51403 6.56222 6.63474 6.65710 6.70768 6.80222 6.88349 6.93546 7.15253 7.22912 7.25698 7.63831 7.86952 7.99175 8.06065 8.41527 8.58837 8.84004 9.14944 10.27659 10.43316 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.002431 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.301075 B =11515.008460 C =11688.467935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.115 3.885 4 C -0.150 4.150 5 C -0.079 4.079 6 C -0.109 4.109 7 C -0.074 4.074 8 C -0.131 4.131 9 C 0.137 3.863 10 N -0.622 5.622 11 C 0.115 3.885 12 C 0.411 3.589 13 C -0.365 4.365 14 C -0.032 4.032 15 C -0.318 4.318 16 C 0.291 3.709 17 C -0.434 4.434 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.715 5.715 21 Si 0.904 3.096 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.266 1.266 25 N -0.527 5.527 26 C -0.076 4.076 27 C -0.205 4.205 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.029 0.971 40 H 0.089 0.911 41 H 0.035 0.965 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -12.065 13.419 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.169 4.169 5 C -0.097 4.097 6 C -0.109 4.109 7 C -0.112 4.112 8 C -0.171 4.171 9 C 0.012 3.988 10 N -0.339 5.339 11 C -0.029 4.029 12 C 0.173 3.827 13 C -0.391 4.391 14 C -0.057 4.057 15 C -0.341 4.341 16 C 0.164 3.836 17 C -0.466 4.466 18 H 0.099 0.901 19 C -0.152 4.152 20 N -0.337 5.337 21 Si 0.729 3.271 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.191 1.191 25 N -0.248 5.248 26 C -0.094 4.094 27 C -0.224 4.224 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.108 0.892 41 H 0.054 0.946 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.032 -12.695 12.992 18.279 hybrid contribution -1.022 0.437 -0.397 1.180 sum -3.054 -12.258 12.595 17.839 Atomic orbital electron populations 1.23032 0.78526 1.03766 1.01413 1.86045 1.21297 1.27155 1.88980 1.19023 0.92406 0.84054 0.97459 1.20397 0.91323 0.98620 1.06565 1.20874 0.99844 0.90993 0.97964 1.19873 0.93546 0.95497 1.02022 1.20522 1.00062 0.92851 0.97783 1.22073 1.02073 0.97908 0.95027 1.21225 0.99438 0.94581 0.83540 1.45963 1.18085 1.57769 1.12118 1.21318 0.84201 1.01144 0.96215 1.18502 0.86030 0.88038 0.90131 1.20626 1.00670 1.18134 0.99674 1.20583 0.95983 0.94876 0.94233 1.21521 1.02725 1.14218 0.95658 1.18211 0.86173 0.86453 0.92720 1.19522 1.04210 1.29000 0.93906 0.90070 1.26020 0.95646 0.93886 0.99683 1.70124 1.05996 1.21624 1.35970 0.86456 0.78268 0.79695 0.82715 1.19071 1.20376 1.19100 1.68244 1.31438 1.21026 1.04054 1.20892 0.94156 0.97076 0.97283 1.21217 0.99923 0.92400 1.08814 0.92744 0.92590 0.88377 0.85424 0.85373 0.91036 0.91169 0.92045 0.91368 0.90993 0.92065 0.95211 0.89228 0.94624 0.88999 0.89057 0.88855 0.91964 0.85651 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.57 10.50 -19.43 -0.20 -3.77 16 3 C 0.12 1.37 6.69 -39.21 -0.26 1.11 16 4 C -0.15 -1.73 9.99 -39.43 -0.39 -2.12 16 5 C -0.08 -0.88 9.69 -39.61 -0.38 -1.27 16 6 C -0.11 -1.29 5.13 -104.60 -0.54 -1.83 16 7 C -0.07 -0.83 5.34 -27.88 -0.15 -0.98 16 8 C -0.13 -1.89 5.52 -26.74 -0.15 -2.04 16 9 C 0.14 2.15 5.28 -4.04 -0.02 2.13 16 10 N -0.62 -12.77 2.98 -181.68 -0.54 -13.31 16 11 C 0.11 2.25 10.46 59.85 0.63 2.88 16 12 C 0.41 10.12 7.37 -155.32 -1.14 8.98 16 13 C -0.37 -8.42 9.29 -38.87 -0.36 -8.78 16 14 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 15 C -0.32 -8.13 9.83 -38.65 -0.38 -8.51 16 16 C 0.29 8.16 6.55 -85.00 -0.56 7.60 16 17 C -0.43 -11.81 9.14 -37.75 -0.34 -12.15 16 18 H 0.08 2.08 7.85 -52.48 -0.41 1.66 16 19 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 20 N -0.72 -18.76 11.46 55.55 0.64 -18.13 16 21 Si 0.90 18.80 29.56 -169.99 -5.02 13.77 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 N -0.53 -14.52 6.64 -10.33 -0.07 -14.59 16 26 C -0.08 -0.89 9.69 -39.61 -0.38 -1.28 16 27 C -0.20 -2.31 9.04 -39.43 -0.36 -2.66 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.13 5.97 -51.93 -0.31 0.82 16 38 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 2.03 7.45 -51.93 -0.39 1.65 16 41 H 0.04 0.57 7.89 -51.93 -0.41 0.16 16 42 H 0.09 1.87 6.01 -52.49 -0.32 1.55 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 46 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -31.01 388.92 -10.79 -41.80 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.15 Total: 5.49 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -4.30 Total: -17.12 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.03 Total: -46.03 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.01 -10.79 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.625 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds