Wall clock time and date at job start Tue Mar 31 2020 14:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00086 * 2 1 4 4 C 1.38740 * 120.05712 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94681 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05338 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94136 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47212 * 90.00102 * 7 6 5 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 N 1.46507 * 109.47485 * 179.97438 * 9 8 7 11 11 C 1.46499 * 120.00102 * 270.00258 * 10 9 8 12 12 C 1.38825 * 119.99433 * 90.00089 * 10 9 8 13 13 C 1.39792 * 119.58733 * 4.73052 * 12 10 9 14 14 C 1.38596 * 119.48880 * 179.78937 * 13 12 10 15 15 C 1.38392 * 118.68149 * 0.47829 * 14 13 12 16 16 C 1.40557 * 119.14883 * 359.74272 * 15 14 13 17 17 C 1.41307 * 119.78590 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00187 * 0.02562 * 17 16 15 19 19 C 1.40023 * 120.00184 * 180.02562 * 17 16 15 20 20 N 1.30747 * 119.99945 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99944 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47517 * 60.00088 * 21 19 17 23 23 H 1.48505 * 109.46874 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47023 * 299.99639 * 21 19 17 25 25 N 1.31959 * 119.57826 * 185.00027 * 12 10 9 26 26 C 1.38261 * 120.11222 * 0.25270 * 6 5 4 27 27 C 1.38144 * 120.05633 * 359.45047 * 26 6 5 28 28 H 1.09000 * 109.47106 * 300.00137 * 1 2 3 29 29 H 1.09000 * 109.47348 * 59.99680 * 1 2 3 30 30 H 1.08993 * 109.47158 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.02343 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.97195 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47060 * 210.00157 * 7 6 5 34 34 H 1.09001 * 109.47380 * 330.00244 * 7 6 5 35 35 H 1.09002 * 109.47153 * 299.99998 * 8 7 6 36 36 H 1.08998 * 109.47533 * 59.99628 * 8 7 6 37 37 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 38 38 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 39 39 H 1.09000 * 109.47121 * 89.99670 * 11 10 9 40 40 H 1.09001 * 109.46705 * 210.00337 * 11 10 9 41 41 H 1.09004 * 109.46774 * 329.99905 * 11 10 9 42 42 H 1.08000 * 120.25656 * 359.97438 * 13 12 10 43 43 H 1.08001 * 120.65825 * 180.21944 * 14 13 12 44 44 H 1.07999 * 120.42512 * 179.77046 * 15 14 13 45 45 H 0.96996 * 119.99915 * 180.02562 * 20 19 17 46 46 H 1.07999 * 119.97190 * 179.70663 * 26 6 5 47 47 H 1.08001 * 120.03140 * 180.25189 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2171 5.4745 -1.4393 9 6 4.9111 6.8379 -1.4382 10 7 5.1328 7.2743 -2.8191 11 6 6.3742 6.9169 -3.5099 12 6 4.1663 8.0265 -3.4728 13 6 3.0302 8.4469 -2.7752 14 6 2.0687 9.2014 -3.4287 15 6 2.2603 9.5089 -4.7644 16 6 3.4215 9.0530 -5.4120 17 6 3.6311 9.3596 -6.7754 18 1 2.9005 9.9428 -7.3163 19 6 4.7860 8.9073 -7.4253 20 7 5.6702 8.2008 -6.7707 21 14 5.0633 9.3132 -9.2275 22 1 5.1076 10.7872 -9.4018 23 1 6.3499 8.7224 -9.6756 24 1 3.9526 8.7521 -10.0379 25 7 4.3292 8.3310 -4.7464 26 6 1.9212 3.6047 0.0080 27 6 1.2916 2.3751 0.0012 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 4.0208 0.3799 -0.0014 32 1 5.1346 2.5749 -0.0008 33 1 3.3584 5.7457 0.5177 34 1 4.9444 4.9376 0.5160 35 1 4.8448 4.7472 -1.9542 36 1 3.2590 5.5554 -1.9527 37 1 4.2830 7.5649 -0.9234 38 1 5.8693 6.7574 -0.9248 39 1 6.2426 5.9651 -4.0245 40 1 6.6219 7.6913 -4.2359 41 1 7.1818 6.8284 -2.7832 42 1 2.9041 8.1882 -1.7342 43 1 1.1854 9.5392 -2.9071 44 1 1.5273 10.0920 -5.3020 45 1 6.4704 7.8878 -7.2208 46 1 1.3343 4.5114 0.0140 47 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:33 Heat of formation + Delta-G solvation = 10.501693 kcal Electronic energy + Delta-G solvation = -26496.852173 eV Core-core repulsion = 22837.191840 eV Total energy + Delta-G solvation = -3659.660332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.08343 -40.25546 -38.82775 -37.55519 -35.32247 -34.56922 -32.31298 -32.02332 -31.31328 -30.53100 -28.60241 -27.96551 -26.69265 -25.47602 -23.64562 -23.31939 -22.94662 -21.67187 -21.28294 -19.28299 -19.08898 -17.83696 -17.24405 -16.68904 -16.65248 -16.58212 -16.25154 -15.91571 -15.57901 -15.50216 -15.21326 -14.88902 -14.57508 -14.44376 -14.21569 -14.05917 -13.75733 -13.64232 -13.22349 -12.91012 -12.83344 -12.77621 -12.75113 -12.65454 -12.54219 -12.42880 -12.09104 -12.06918 -11.80208 -11.75233 -11.66262 -11.43570 -11.20763 -10.43136 -9.94909 -9.78173 -9.36467 -9.02903 -8.19822 -8.09668 -6.43937 0.39606 0.45047 1.09371 1.37865 1.41636 1.52822 1.59907 2.26006 2.38208 2.49366 2.80540 2.95030 3.83789 3.88143 3.96485 4.05208 4.09372 4.26433 4.31724 4.35657 4.41208 4.45684 4.49037 4.51735 4.63287 4.64598 4.68588 4.70999 4.76885 4.86698 4.89279 4.98510 5.03116 5.06284 5.08696 5.14107 5.22447 5.33950 5.37363 5.39038 5.41363 5.46963 5.75237 5.77419 5.85225 6.00757 6.15346 6.19236 6.44304 6.65340 6.72311 6.93930 7.23836 8.37819 8.53951 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.002431 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.301075 B =11515.008460 C =11688.467935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.103 3.897 4 C -0.164 4.164 5 C -0.082 4.082 6 C -0.123 4.123 7 C -0.063 4.063 8 C -0.118 4.118 9 C 0.133 3.867 10 N -0.624 5.624 11 C 0.121 3.879 12 C 0.391 3.609 13 C -0.362 4.362 14 C -0.031 4.031 15 C -0.348 4.348 16 C 0.256 3.744 17 C -0.472 4.472 18 H 0.083 0.917 19 C 0.028 3.972 20 N -0.745 5.745 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.268 1.268 24 H -0.263 1.263 25 N -0.556 5.556 26 C -0.089 4.089 27 C -0.212 4.212 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.275 0.725 46 H 0.132 0.868 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 -12.644 14.781 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.058 3.942 4 C -0.183 4.183 5 C -0.100 4.100 6 C -0.124 4.124 7 C -0.101 4.101 8 C -0.157 4.157 9 C 0.010 3.990 10 N -0.340 5.340 11 C -0.023 4.023 12 C 0.152 3.848 13 C -0.388 4.388 14 C -0.056 4.056 15 C -0.371 4.371 16 C 0.129 3.871 17 C -0.504 4.504 18 H 0.101 0.899 19 C -0.194 4.194 20 N -0.367 5.367 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.192 1.192 24 H -0.187 1.187 25 N -0.279 5.279 26 C -0.107 4.107 27 C -0.231 4.231 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.140 0.860 43 H 0.145 0.855 44 H 0.117 0.883 45 H 0.086 0.914 46 H 0.150 0.850 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.830 -13.295 14.405 19.688 hybrid contribution -1.131 0.523 -0.672 1.416 sum -2.961 -12.772 13.733 18.986 Atomic orbital electron populations 1.23302 0.76716 1.05481 1.02013 1.86023 1.23266 1.26961 1.88906 1.19258 0.92876 0.84565 0.97493 1.20666 0.91619 0.99323 1.06690 1.21125 1.00843 0.90713 0.97332 1.20027 0.93750 0.95978 1.02617 1.20440 1.01431 0.92647 0.95568 1.21887 0.99923 0.97024 0.96881 1.21535 1.01475 0.94982 0.81045 1.46266 1.17334 1.56835 1.13585 1.21231 0.85203 0.99166 0.96691 1.19003 0.87507 0.88427 0.89868 1.20984 0.99814 1.16983 1.00983 1.20995 0.97105 0.93937 0.93523 1.21669 1.02717 1.15630 0.97054 1.18693 0.87361 0.87322 0.93684 1.19854 1.05564 1.30494 0.94495 0.89915 1.26888 0.94809 0.93385 1.04365 1.70229 1.06397 1.22146 1.37923 0.85269 0.78413 0.79534 0.76441 1.18519 1.19237 1.18746 1.68219 1.32076 1.21924 1.05647 1.21116 0.94557 0.97592 0.97442 1.21436 1.00908 0.92163 1.08595 0.91687 0.92390 0.86223 0.84417 0.83575 0.90059 0.88917 0.92930 0.94520 0.90604 0.88775 0.96229 0.92754 0.90430 0.85974 0.85471 0.88341 0.91433 0.84975 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.20 10.50 -92.42 -0.97 -8.17 16 3 C 0.10 2.37 6.69 22.51 0.15 2.52 16 4 C -0.16 -3.62 9.99 22.37 0.22 -3.39 16 5 C -0.08 -1.71 9.69 22.25 0.22 -1.50 16 6 C -0.12 -2.71 5.13 -19.85 -0.10 -2.82 16 7 C -0.06 -1.24 5.34 29.85 0.16 -1.08 16 8 C -0.12 -3.18 5.52 30.59 0.17 -3.01 16 9 C 0.13 3.81 5.28 86.38 0.46 4.27 16 10 N -0.62 -25.08 2.98 -728.73 -2.17 -27.25 16 11 C 0.12 4.69 10.46 127.77 1.34 6.02 16 12 C 0.39 19.36 7.37 133.42 0.98 20.34 16 13 C -0.36 -16.33 9.29 22.73 0.21 -16.12 16 14 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 15 C -0.35 -18.15 9.83 22.87 0.22 -17.93 16 16 C 0.26 14.89 6.55 40.18 0.26 15.15 16 17 C -0.47 -26.66 9.14 23.46 0.21 -26.45 16 18 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 19 C 0.03 1.44 5.50 85.29 0.47 1.91 16 20 N -0.75 -40.30 11.46 21.84 0.25 -40.05 16 21 Si 0.98 39.25 29.56 68.60 2.03 41.27 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 N -0.56 -31.64 6.64 -186.59 -1.24 -32.88 16 26 C -0.09 -1.99 9.69 22.25 0.22 -1.77 16 27 C -0.21 -4.58 9.04 22.37 0.20 -4.38 16 28 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 29 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.09 1.44 8.08 -2.39 -0.02 1.42 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 2.14 5.97 -2.39 -0.01 2.12 16 38 H 0.09 2.13 7.89 -2.39 -0.02 2.11 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 2.52 7.45 -2.39 -0.02 2.50 16 41 H 0.08 2.31 7.89 -2.39 -0.02 2.29 16 42 H 0.12 4.65 6.01 -2.91 -0.02 4.64 16 43 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 44 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 45 H 0.28 13.50 8.29 -92.71 -0.77 12.74 16 46 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 47 H 0.14 2.42 6.30 -2.91 -0.02 2.41 16 Total: -1.00 -70.05 388.92 5.58 -64.48 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.95 Total: 30.68 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 6.73 Total: -28.07 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -3.16 Total: -100.19 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.97 Total: -8.17 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.27 kcal Total: -70.05 5.58 -64.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.977 kcal (2) G-P(sol) polarization free energy of solvation -70.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds