Wall clock time and date at job start Tue Mar 31 2020 14:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81397 * 102.99890 * 2 1 4 4 C 1.53004 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47485 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99766 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00422 * 180.02562 * 5 4 3 8 8 C 1.46929 * 120.63050 * 359.97438 * 7 5 4 9 9 C 1.53194 * 108.77820 * 233.63581 * 8 7 5 10 10 C 1.53039 * 109.30620 * 305.36425 * 9 8 7 11 11 C 1.53043 * 109.54036 * 61.36941 * 10 9 8 12 12 H 1.08995 * 109.52268 * 58.59721 * 11 10 9 13 13 C 1.53006 * 109.49618 * 178.68154 * 11 10 9 14 14 H 1.08999 * 109.99609 * 305.23127 * 13 11 10 15 15 C 1.54328 * 109.98955 * 184.19725 * 13 11 10 16 16 C 1.55162 * 103.02015 * 218.66561 * 15 13 11 17 17 C 1.54907 * 101.57973 * 35.30577 * 16 15 13 18 18 N 1.47020 * 109.88408 * 66.32814 * 13 11 10 19 19 C 1.36940 * 125.64837 * 298.39560 * 18 13 11 20 20 H 1.07998 * 120.00101 * 139.00913 * 19 18 13 21 21 C 1.38813 * 119.99825 * 319.01206 * 19 18 13 22 22 N 1.31624 * 120.00202 * 165.26360 * 21 19 18 23 23 Si 1.86802 * 120.00110 * 345.26712 * 21 19 18 24 24 H 1.48503 * 109.47203 * 88.93100 * 23 21 19 25 25 H 1.48504 * 109.46960 * 328.92937 * 23 21 19 26 26 H 1.48498 * 109.47135 * 208.93154 * 23 21 19 27 27 C 1.46925 * 120.63155 * 180.02562 * 7 5 4 28 28 H 1.08997 * 109.46758 * 299.99823 * 1 2 3 29 29 H 1.08998 * 109.46956 * 59.99742 * 1 2 3 30 30 H 1.08995 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47437 * 60.00479 * 3 2 1 32 32 H 1.09001 * 109.47140 * 299.99774 * 3 2 1 33 33 H 1.09007 * 109.46751 * 60.00384 * 4 3 2 34 34 H 1.08993 * 109.47427 * 300.00732 * 4 3 2 35 35 H 1.09008 * 109.58255 * 353.42266 * 8 7 5 36 36 H 1.08999 * 109.58677 * 113.69760 * 8 7 5 37 37 H 1.09001 * 109.49433 * 65.31169 * 9 8 7 38 38 H 1.08999 * 109.49558 * 185.37838 * 9 8 7 39 39 H 1.08996 * 109.46099 * 301.33918 * 10 9 8 40 40 H 1.09005 * 109.45581 * 181.38605 * 10 9 8 41 41 H 1.09000 * 110.85180 * 100.19543 * 15 13 11 42 42 H 1.09008 * 110.66987 * 337.04243 * 15 13 11 43 43 H 1.08999 * 111.00116 * 277.23213 * 16 15 13 44 44 H 1.08998 * 111.03785 * 153.39372 * 16 15 13 45 45 H 1.09006 * 110.36446 * 204.15804 * 17 16 15 46 46 H 1.08997 * 110.36807 * 81.83290 * 17 16 15 47 47 H 0.96996 * 120.00055 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58393 * 6.57692 * 27 7 5 49 49 H 1.09000 * 109.69820 * 246.22263 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0815 3.4083 0.0000 6 8 3.1945 4.2354 -0.0004 7 7 5.3703 3.8023 -0.0001 8 6 6.4558 2.8121 0.0010 9 6 7.3995 3.1162 1.1688 10 6 7.8732 4.5682 1.0717 11 6 6.6685 5.5072 1.1672 12 1 6.1477 5.3368 2.1094 13 6 7.1464 6.9592 1.1030 14 1 7.8970 7.1389 1.8727 15 6 5.9530 7.9168 1.3038 16 6 6.2568 9.0676 0.3083 17 6 6.9116 8.2982 -0.8659 18 7 7.7135 7.2408 -0.2238 19 6 8.8026 6.6197 -0.7745 20 1 8.7973 6.3460 -1.8192 21 6 9.9135 6.3417 0.0101 22 7 10.8304 5.5017 -0.4213 23 14 10.1070 7.1597 1.6783 24 1 9.4466 6.3286 2.7168 25 1 9.4776 8.5044 1.6463 26 1 11.5507 7.2965 1.9981 27 6 5.7165 5.2302 -0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8032 2.2371 0.8900 32 1 1.8032 2.2371 -0.8900 33 1 4.1616 1.4702 -0.8892 34 1 4.1609 1.4703 0.8907 35 1 6.0382 1.8122 0.1194 36 1 7.0041 2.8700 -0.9393 37 1 6.8718 2.9679 2.1110 38 1 8.2599 2.4485 1.1246 39 1 8.3791 4.7221 0.1186 40 1 8.5642 4.7800 1.8877 41 1 5.9230 8.2902 2.3274 42 1 5.0158 7.4227 1.0475 43 1 6.9532 9.7854 0.7418 44 1 5.3390 9.5610 -0.0114 45 1 7.5536 8.9629 -1.4439 46 1 6.1460 7.8583 -1.5051 47 1 11.6064 5.3072 0.1272 48 1 4.8112 5.8257 0.1175 49 1 6.2052 5.4897 -0.9393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120320092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:06 Heat of formation + Delta-G solvation = -14.835935 kcal Electronic energy + Delta-G solvation = -27590.005753 eV Core-core repulsion = 24064.690650 eV Total energy + Delta-G solvation = -3525.315103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12483 -38.51227 -36.37234 -33.25148 -32.92754 -32.13562 -30.90876 -29.97392 -29.24845 -27.32603 -25.65942 -24.55169 -23.58086 -22.61715 -20.50300 -20.15155 -19.41685 -18.54296 -17.32212 -16.67873 -16.04297 -15.95539 -15.83733 -15.40427 -14.81272 -14.32174 -14.06801 -13.89223 -13.70120 -13.59236 -13.51871 -13.29931 -13.15724 -12.71396 -12.55210 -12.43841 -12.17668 -11.97152 -11.88905 -11.55659 -11.52356 -11.31405 -11.16115 -10.82523 -10.65750 -10.44167 -10.35600 -10.25718 -10.15486 -10.10379 -9.78450 -9.61717 -9.45203 -9.28613 -8.44179 -8.14986 -7.94335 -6.73987 -6.07331 -3.51702 1.38451 2.32170 2.78747 3.27269 3.31906 3.42106 3.47976 4.45980 4.57631 4.69733 4.76577 4.85062 4.86606 4.97506 5.11465 5.19611 5.33210 5.39955 5.40483 5.42288 5.45909 5.53565 5.58753 5.65894 5.69914 5.75356 5.84139 5.89621 6.04775 6.16323 6.22815 6.25964 6.29963 6.36350 6.43167 6.54845 6.62970 6.69469 6.77123 6.83207 6.89705 6.97613 7.03276 7.62385 7.71158 7.97375 8.28906 8.35687 8.82362 9.59449 10.24557 11.07115 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.003456 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.493250 B = 8100.319827 C = 8934.521466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.271 6.271 3 C -0.064 4.064 4 C -0.125 4.125 5 C 0.516 3.484 6 O -0.554 6.554 7 N -0.601 5.601 8 C 0.108 3.892 9 C -0.131 4.131 10 C -0.138 4.138 11 C -0.095 4.095 12 H 0.049 0.951 13 C 0.152 3.848 14 H 0.037 0.963 15 C -0.132 4.132 16 C -0.136 4.136 17 C 0.128 3.872 18 N -0.602 5.602 19 C -0.247 4.247 20 H 0.081 0.919 21 C 0.049 3.951 22 N -0.901 5.901 23 Si 0.881 3.119 24 H -0.279 1.279 25 H -0.272 1.272 26 H -0.305 1.305 27 C 0.127 3.873 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.026 0.974 47 H 0.265 0.735 48 H 0.079 0.921 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.517 -7.360 2.359 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.045 6.045 3 C -0.213 4.213 4 C -0.166 4.166 5 C 0.302 3.698 6 O -0.434 6.434 7 N -0.333 5.333 8 C -0.015 4.015 9 C -0.169 4.169 10 C -0.175 4.175 11 C -0.116 4.116 12 H 0.067 0.933 13 C 0.046 3.954 14 H 0.054 0.946 15 C -0.170 4.170 16 C -0.174 4.174 17 C 0.003 3.997 18 N -0.328 5.328 19 C -0.374 4.374 20 H 0.099 0.901 21 C -0.153 4.153 22 N -0.542 5.542 23 Si 0.712 3.288 24 H -0.206 1.206 25 H -0.198 1.198 26 H -0.233 1.233 27 C 0.006 3.994 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.065 -7.925 2.320 16.310 hybrid contribution -0.452 1.334 1.233 1.872 sum -14.518 -6.590 3.553 16.335 Atomic orbital electron populations 1.23353 0.93850 1.06386 1.05100 1.86785 1.07792 1.11810 1.98157 1.23101 0.98600 0.93117 1.06448 1.21383 0.94867 0.94888 1.05428 1.20327 0.82527 0.90441 0.76494 1.90662 1.46637 1.54702 1.51350 1.48209 1.05034 1.08554 1.71488 1.21797 0.88580 0.90787 1.00293 1.21909 0.98438 0.99689 0.96852 1.22186 0.97028 0.90977 1.07304 1.21714 0.96197 0.97287 0.96440 0.93272 1.21209 0.92701 0.91456 0.90077 0.94611 1.22670 0.98640 0.96874 0.98858 1.22753 0.99797 0.97192 0.97695 1.21766 0.93934 0.90140 0.93882 1.44672 1.31965 1.40731 1.15421 1.18373 0.89718 1.32727 0.96628 0.90150 1.25467 0.94771 0.97049 0.97991 1.69782 1.11898 1.34098 1.38379 0.87013 0.75305 0.81230 0.85239 1.20623 1.19792 1.23335 1.21698 0.98597 0.78664 1.00488 0.90432 0.90393 0.88112 0.89319 0.89244 0.88069 0.88131 0.90707 0.90589 0.93146 0.91118 0.84996 0.92940 0.92187 0.91144 0.91901 0.91948 0.93402 0.95659 0.92536 0.90244 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.76 101.05 1.09 0.23 16 2 S -0.27 -2.76 22.38 -107.50 -2.41 -5.17 16 3 C -0.06 -0.71 5.23 37.16 0.19 -0.51 16 4 C -0.12 -1.43 4.05 -27.88 -0.11 -1.55 16 5 C 0.52 7.95 7.70 -10.99 -0.08 7.87 16 6 O -0.55 -10.20 15.39 5.56 0.09 -10.11 16 7 N -0.60 -9.66 2.97 -172.79 -0.51 -10.17 16 8 C 0.11 1.55 6.34 -3.71 -0.02 1.53 16 9 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 10 C -0.14 -2.77 3.61 -26.69 -0.10 -2.87 16 11 C -0.10 -1.82 2.14 -90.52 -0.19 -2.01 16 12 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 13 C 0.15 3.10 2.12 -66.95 -0.14 2.96 16 14 H 0.04 0.82 3.67 -51.93 -0.19 0.63 16 15 C -0.13 -2.28 6.31 -24.89 -0.16 -2.44 16 16 C -0.14 -2.27 7.09 -24.58 -0.17 -2.44 16 17 C 0.13 2.46 7.23 -2.53 -0.02 2.44 16 18 N -0.60 -13.31 1.52 -162.57 -0.25 -13.56 16 19 C -0.25 -6.27 8.23 -15.06 -0.12 -6.40 16 20 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 21 C 0.05 1.28 3.49 -17.43 -0.06 1.22 16 22 N -0.90 -25.04 13.96 55.49 0.77 -24.27 16 23 Si 0.88 21.58 23.28 -169.99 -3.96 17.62 16 24 H -0.28 -6.62 5.87 56.52 0.33 -6.29 16 25 H -0.27 -6.74 7.10 56.52 0.40 -6.33 16 26 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 27 C 0.13 2.32 5.28 -3.73 -0.02 2.30 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.09 1.03 8.10 -51.92 -0.42 0.61 16 33 H 0.10 1.05 7.94 -51.92 -0.41 0.64 16 34 H 0.10 1.05 7.69 -51.93 -0.40 0.65 16 35 H 0.07 0.84 5.93 -51.92 -0.31 0.53 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.13 3.08 4.54 -51.93 -0.24 2.84 16 40 H 0.05 1.15 5.74 -51.93 -0.30 0.85 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.17 6.13 -51.92 -0.32 0.85 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.08 1.50 5.39 -51.93 -0.28 1.22 16 49 H 0.09 1.77 7.18 -51.93 -0.37 1.40 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -28.62 369.73 -9.14 -37.76 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.36 Total: 4.27 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.09 Total: -1.93 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.01 Total: -48.00 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -3.96 Total: 17.62 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.41 Total: -5.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.62 -9.14 -37.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120320092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.920 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds