Wall clock time and date at job start Tue Mar 31 2020 14:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81397 * 102.99890 * 2 1 4 4 C 1.53004 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47485 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99766 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00422 * 180.02562 * 5 4 3 8 8 C 1.46929 * 120.63050 * 359.97438 * 7 5 4 9 9 C 1.53194 * 108.77820 * 233.63581 * 8 7 5 10 10 C 1.53039 * 109.30620 * 305.36425 * 9 8 7 11 11 C 1.53043 * 109.54036 * 61.36941 * 10 9 8 12 12 H 1.08995 * 109.52268 * 58.59721 * 11 10 9 13 13 C 1.53006 * 109.49618 * 178.68154 * 11 10 9 14 14 H 1.08999 * 109.99609 * 305.23127 * 13 11 10 15 15 C 1.54328 * 109.98955 * 184.19725 * 13 11 10 16 16 C 1.55162 * 103.02015 * 218.66561 * 15 13 11 17 17 C 1.54907 * 101.57973 * 35.30577 * 16 15 13 18 18 N 1.47020 * 109.88408 * 66.32814 * 13 11 10 19 19 C 1.36940 * 125.64837 * 298.39560 * 18 13 11 20 20 H 1.07998 * 120.00101 * 139.00913 * 19 18 13 21 21 C 1.38813 * 119.99825 * 319.01206 * 19 18 13 22 22 N 1.31624 * 120.00202 * 165.26360 * 21 19 18 23 23 Si 1.86802 * 120.00110 * 345.26712 * 21 19 18 24 24 H 1.48503 * 109.47203 * 88.93100 * 23 21 19 25 25 H 1.48504 * 109.46960 * 328.92937 * 23 21 19 26 26 H 1.48498 * 109.47135 * 208.93154 * 23 21 19 27 27 C 1.46925 * 120.63155 * 180.02562 * 7 5 4 28 28 H 1.08997 * 109.46758 * 299.99823 * 1 2 3 29 29 H 1.08998 * 109.46956 * 59.99742 * 1 2 3 30 30 H 1.08995 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47437 * 60.00479 * 3 2 1 32 32 H 1.09001 * 109.47140 * 299.99774 * 3 2 1 33 33 H 1.09007 * 109.46751 * 60.00384 * 4 3 2 34 34 H 1.08993 * 109.47427 * 300.00732 * 4 3 2 35 35 H 1.09008 * 109.58255 * 353.42266 * 8 7 5 36 36 H 1.08999 * 109.58677 * 113.69760 * 8 7 5 37 37 H 1.09001 * 109.49433 * 65.31169 * 9 8 7 38 38 H 1.08999 * 109.49558 * 185.37838 * 9 8 7 39 39 H 1.08996 * 109.46099 * 301.33918 * 10 9 8 40 40 H 1.09005 * 109.45581 * 181.38605 * 10 9 8 41 41 H 1.09000 * 110.85180 * 100.19543 * 15 13 11 42 42 H 1.09008 * 110.66987 * 337.04243 * 15 13 11 43 43 H 1.08999 * 111.00116 * 277.23213 * 16 15 13 44 44 H 1.08998 * 111.03785 * 153.39372 * 16 15 13 45 45 H 1.09006 * 110.36446 * 204.15804 * 17 16 15 46 46 H 1.08997 * 110.36807 * 81.83290 * 17 16 15 47 47 H 0.96996 * 120.00055 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58393 * 6.57692 * 27 7 5 49 49 H 1.09000 * 109.69820 * 246.22263 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0815 3.4083 0.0000 6 8 3.1945 4.2354 -0.0004 7 7 5.3703 3.8023 -0.0001 8 6 6.4558 2.8121 0.0010 9 6 7.3995 3.1162 1.1688 10 6 7.8732 4.5682 1.0717 11 6 6.6685 5.5072 1.1672 12 1 6.1477 5.3368 2.1094 13 6 7.1464 6.9592 1.1030 14 1 7.8970 7.1389 1.8727 15 6 5.9530 7.9168 1.3038 16 6 6.2568 9.0676 0.3083 17 6 6.9116 8.2982 -0.8659 18 7 7.7135 7.2408 -0.2238 19 6 8.8026 6.6197 -0.7745 20 1 8.7973 6.3460 -1.8192 21 6 9.9135 6.3417 0.0101 22 7 10.8304 5.5017 -0.4213 23 14 10.1070 7.1597 1.6783 24 1 9.4466 6.3286 2.7168 25 1 9.4776 8.5044 1.6463 26 1 11.5507 7.2965 1.9981 27 6 5.7165 5.2302 -0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8032 2.2371 0.8900 32 1 1.8032 2.2371 -0.8900 33 1 4.1616 1.4702 -0.8892 34 1 4.1609 1.4703 0.8907 35 1 6.0382 1.8122 0.1194 36 1 7.0041 2.8700 -0.9393 37 1 6.8718 2.9679 2.1110 38 1 8.2599 2.4485 1.1246 39 1 8.3791 4.7221 0.1186 40 1 8.5642 4.7800 1.8877 41 1 5.9230 8.2902 2.3274 42 1 5.0158 7.4227 1.0475 43 1 6.9532 9.7854 0.7418 44 1 5.3390 9.5610 -0.0114 45 1 7.5536 8.9629 -1.4439 46 1 6.1460 7.8583 -1.5051 47 1 11.6064 5.3072 0.1272 48 1 4.8112 5.8257 0.1175 49 1 6.2052 5.4897 -0.9393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120320092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:05 Heat of formation + Delta-G solvation = -30.220100 kcal Electronic energy + Delta-G solvation = -27590.672861 eV Core-core repulsion = 24064.690650 eV Total energy + Delta-G solvation = -3525.982211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47234 -39.99337 -37.76302 -34.80954 -34.35199 -33.51291 -32.28610 -31.74562 -29.82301 -28.77428 -26.92515 -26.31904 -24.80519 -24.01603 -22.03453 -21.63037 -21.00940 -19.84412 -18.61093 -18.34999 -17.60327 -16.98336 -16.90428 -16.81137 -16.28819 -15.46356 -15.37096 -15.25919 -15.17201 -14.93491 -14.71884 -14.48965 -14.26334 -14.16264 -13.82535 -13.64419 -13.54668 -13.44874 -13.13038 -12.96743 -12.89757 -12.69378 -12.47647 -12.41328 -12.15291 -12.14971 -11.88369 -11.80402 -11.69867 -11.45435 -11.18420 -11.01539 -10.86963 -10.75738 -10.32793 -9.60032 -8.70682 -8.58856 -8.14696 -5.54053 0.63022 1.29489 1.39306 1.47887 1.58420 1.61031 2.08766 2.43287 3.12746 3.41218 3.55171 3.67897 3.85101 3.88880 3.90992 4.07181 4.11192 4.15623 4.22380 4.27059 4.32969 4.36001 4.41482 4.46626 4.55700 4.64445 4.66863 4.69845 4.76699 4.83161 4.87424 4.89282 4.91891 5.01072 5.05300 5.11809 5.16141 5.18273 5.26924 5.28016 5.40071 5.49043 5.58725 5.86977 6.07628 6.24001 6.47276 6.91768 7.12054 7.59919 8.30777 9.03874 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.003456 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.493250 B = 8100.319827 C = 8934.521466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.291 6.291 3 C -0.058 4.058 4 C -0.116 4.116 5 C 0.515 3.485 6 O -0.586 6.586 7 N -0.606 5.606 8 C 0.111 3.889 9 C -0.126 4.126 10 C -0.135 4.135 11 C -0.090 4.090 12 H 0.060 0.940 13 C 0.142 3.858 14 H 0.016 0.984 15 C -0.126 4.126 16 C -0.124 4.124 17 C 0.121 3.879 18 N -0.613 5.613 19 C -0.226 4.226 20 H 0.045 0.955 21 C 0.017 3.983 22 N -0.937 5.937 23 Si 0.925 3.075 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.317 1.317 27 C 0.141 3.859 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.028 0.972 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.040 0.960 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.076 0.924 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.104 -8.184 3.532 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.066 6.066 3 C -0.207 4.207 4 C -0.156 4.156 5 C 0.304 3.696 6 O -0.467 6.467 7 N -0.337 5.337 8 C -0.011 4.011 9 C -0.164 4.164 10 C -0.173 4.173 11 C -0.111 4.111 12 H 0.078 0.922 13 C 0.036 3.964 14 H 0.033 0.967 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.003 4.003 18 N -0.339 5.339 19 C -0.355 4.355 20 H 0.063 0.937 21 C -0.181 4.181 22 N -0.581 5.581 23 Si 0.757 3.243 24 H -0.196 1.196 25 H -0.199 1.199 26 H -0.246 1.246 27 C 0.019 3.981 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.682 -8.746 3.498 19.158 hybrid contribution 0.258 1.566 0.782 1.770 sum -16.424 -7.180 4.281 18.429 Atomic orbital electron populations 1.23452 0.91202 1.07643 1.05794 1.86821 1.10797 1.10762 1.98197 1.22971 0.98179 0.93779 1.05739 1.21385 0.95457 0.91768 1.07012 1.20987 0.81580 0.91948 0.75127 1.90646 1.47392 1.56042 1.52599 1.48263 1.05962 1.07794 1.71671 1.21872 0.87956 0.92281 0.98961 1.21861 0.99274 0.96891 0.98393 1.21995 0.96842 0.94224 1.04206 1.21638 0.95954 0.96315 0.97191 0.92195 1.21341 0.93502 0.93330 0.88193 0.96667 1.22659 0.97290 0.96175 1.00214 1.22707 1.00901 0.96697 0.95955 1.21889 0.93686 0.89673 0.95047 1.44732 1.31470 1.41522 1.16199 1.18085 0.90667 1.31620 0.95131 0.93707 1.25728 0.94760 0.97633 1.00028 1.69872 1.12701 1.35983 1.39551 0.86299 0.74273 0.80496 0.83253 1.19636 1.19912 1.24629 1.21314 0.97718 0.80482 0.98617 0.89729 0.89763 0.86546 0.89964 0.90070 0.86466 0.86268 0.86553 0.91844 0.91492 0.90407 0.88561 0.95310 0.90199 0.90242 0.92093 0.88587 0.94127 0.95087 0.92880 0.90548 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.76 113.37 1.22 -0.12 16 2 S -0.29 -5.22 22.38 -56.49 -1.26 -6.49 16 3 C -0.06 -1.16 5.23 71.98 0.38 -0.78 16 4 C -0.12 -2.33 4.05 29.85 0.12 -2.21 16 5 C 0.52 14.87 7.70 87.66 0.67 15.54 16 6 O -0.59 -20.73 15.39 -3.03 -0.05 -20.78 16 7 N -0.61 -18.57 2.97 -818.98 -2.43 -21.00 16 8 C 0.11 2.99 6.34 86.36 0.55 3.54 16 9 C -0.13 -3.85 6.08 30.67 0.19 -3.67 16 10 C -0.14 -5.46 3.61 30.62 0.11 -5.35 16 11 C -0.09 -3.38 2.14 -10.73 -0.02 -3.40 16 12 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 13 C 0.14 5.71 2.12 45.35 0.10 5.81 16 14 H 0.02 0.70 3.67 -2.39 -0.01 0.70 16 15 C -0.13 -4.02 6.31 31.79 0.20 -3.82 16 16 C -0.12 -3.84 7.09 31.99 0.23 -3.61 16 17 C 0.12 4.60 7.23 86.86 0.63 5.23 16 18 N -0.61 -27.40 1.52 -668.25 -1.02 -28.41 16 19 C -0.23 -11.92 8.23 84.03 0.69 -11.23 16 20 H 0.05 2.66 8.06 -2.91 -0.02 2.64 16 21 C 0.02 0.90 3.49 84.86 0.30 1.20 16 22 N -0.94 -54.19 13.96 21.65 0.30 -53.88 16 23 Si 0.93 45.45 23.28 68.60 1.60 47.05 16 24 H -0.27 -12.68 5.87 99.48 0.58 -12.10 16 25 H -0.27 -13.32 7.10 99.48 0.71 -12.61 16 26 H -0.32 -16.05 7.11 99.48 0.71 -15.34 16 27 C 0.14 5.09 5.28 86.35 0.46 5.54 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 32 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 33 H 0.12 2.04 7.94 -2.38 -0.02 2.02 16 34 H 0.12 2.02 7.69 -2.39 -0.02 2.00 16 35 H 0.12 2.18 5.93 -2.38 -0.01 2.16 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.10 4.64 4.54 -2.39 -0.01 4.62 16 40 H 0.03 1.26 5.74 -2.38 -0.01 1.25 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.08 2.42 6.13 -2.38 -0.01 2.41 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 48 H 0.08 2.80 5.39 -2.39 -0.01 2.78 16 49 H 0.06 2.45 7.18 -2.39 -0.02 2.43 16 Total: -1.00 -64.30 369.73 3.75 -60.55 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.80 Total: 20.31 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.81 Total: 2.66 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -3.15 Total: -103.30 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.78 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.60 Total: 47.05 kcal Atomic # 16 Polarization: -5.22 SS G_CDS: -1.26 Total: -6.49 kcal Total: -64.30 3.75 -60.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120320092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.333 kcal (2) G-P(sol) polarization free energy of solvation -64.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds