Wall clock time and date at job start Tue Mar 31 2020 15:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.29923 * 2 1 4 4 C 1.50627 * 109.30121 * 240.62229 * 2 1 3 5 5 C 1.38732 * 118.41867 * 42.30721 * 4 2 1 6 6 C 1.38007 * 120.37846 * 179.81863 * 5 4 2 7 7 C 1.38263 * 119.87006 * 0.02562 * 6 5 4 8 8 C 1.38032 * 119.82598 * 0.07116 * 7 6 5 9 9 C 1.37830 * 121.85754 * 222.26086 * 4 2 1 10 10 C 1.50728 * 121.65876 * 0.26753 * 9 4 2 11 11 C 1.52891 * 109.95795 * 343.22946 * 10 9 4 12 12 N 1.46633 * 109.30342 * 119.58482 * 2 1 3 13 13 C 1.38580 * 110.99642 * 296.24585 * 12 2 1 14 14 N 1.31218 * 126.47419 * 0.02562 * 13 12 2 15 15 N 1.28532 * 109.86191 * 179.97438 * 14 13 12 16 16 C 1.30298 * 110.04886 * 359.97438 * 15 14 13 17 17 C 1.50704 * 126.34243 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.46918 * 89.98307 * 17 16 15 19 19 C 1.50699 * 109.47223 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99979 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99936 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00146 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46868 * 60.00340 * 23 21 19 25 25 H 1.48496 * 109.47122 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47323 * 300.00575 * 23 21 19 27 27 N 1.36455 * 126.47177 * 179.71602 * 13 12 2 28 28 C 1.46503 * 127.13523 * 0.02996 * 27 13 12 29 29 H 1.09002 * 109.47153 * 300.41530 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.41721 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.41702 * 1 2 3 32 32 H 1.08001 * 119.81044 * 359.84724 * 5 4 2 33 33 H 1.08010 * 120.06547 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.08794 * 180.09877 * 7 6 5 35 35 H 1.07997 * 119.82668 * 179.97438 * 8 7 6 36 36 H 1.08990 * 109.38839 * 223.07418 * 10 9 4 37 37 H 1.09006 * 109.30313 * 103.32608 * 10 9 4 38 38 H 1.08993 * 109.63516 * 290.65721 * 11 10 9 39 39 H 1.09007 * 109.62796 * 170.06796 * 11 10 9 40 40 H 1.08999 * 109.47150 * 209.98060 * 17 16 15 41 41 H 1.08991 * 109.47496 * 329.98005 * 17 16 15 42 42 H 1.08999 * 109.47009 * 299.99840 * 18 17 16 43 43 H 1.09005 * 109.47342 * 59.99471 * 18 17 16 44 44 H 0.97004 * 120.00195 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.47347 * 90.00305 * 28 27 13 46 46 H 1.09005 * 109.46703 * 210.00406 * 28 27 13 47 47 H 1.09003 * 109.47157 * 330.00025 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0278 -0.6974 -1.2388 5 6 1.3944 -0.4337 -2.4446 6 6 1.8198 -1.0474 -3.6052 7 6 2.8828 -1.9308 -3.5674 8 6 3.5129 -2.1957 -2.3681 9 6 3.0860 -1.5798 -1.2013 10 6 3.8024 -1.9018 0.0851 11 6 3.4759 -0.8467 1.1424 12 7 2.0147 -0.6832 1.2035 13 6 1.6389 0.0011 2.3484 14 7 0.9435 1.1127 2.3998 15 7 0.7775 1.4677 3.6239 16 6 1.3519 0.6104 4.4195 17 6 1.3830 0.6709 5.9250 18 6 0.1724 -0.0744 6.4904 19 6 0.2037 -0.0145 7.9959 20 1 1.0066 0.5038 8.4990 21 6 -0.7932 -0.6204 8.7308 22 7 -1.7711 -1.2510 8.1181 23 14 -0.7547 -0.5455 10.5969 24 1 -0.7963 0.8724 11.0364 25 1 -1.9296 -1.2690 11.1457 26 1 0.4929 -1.1807 11.0923 27 7 1.9170 -0.3568 3.6354 28 6 2.6677 -1.5322 4.0840 29 1 -0.3633 0.5203 0.8862 30 1 -0.3633 -1.0277 0.0075 31 1 -0.3634 0.5074 -0.8937 32 1 0.5640 0.2561 -2.4753 33 1 1.3232 -0.8382 -4.5413 34 1 3.2196 -2.4118 -4.4738 35 1 4.3429 -2.8860 -2.3385 36 1 4.8775 -1.9151 -0.0930 37 1 3.4822 -2.8813 0.4404 38 1 3.9394 0.1012 0.8693 39 1 3.8487 -1.1736 2.1132 40 1 2.2988 0.2049 6.2885 41 1 1.3522 1.7116 6.2475 42 1 -0.7434 0.3917 6.1269 43 1 0.2032 -1.1151 6.1678 44 1 -2.4723 -1.6776 8.6351 45 1 3.7258 -1.2812 4.1577 46 1 2.3000 -1.8471 5.0607 47 1 2.5357 -2.3429 3.3674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121495340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:47 Heat of formation + Delta-G solvation = 94.656887 kcal Electronic energy + Delta-G solvation = -27583.310776 eV Core-core repulsion = 23959.592438 eV Total energy + Delta-G solvation = -3623.718338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.06791 -41.32299 -38.55321 -36.46607 -35.71400 -34.70334 -33.91392 -32.72587 -30.90703 -29.93056 -28.94396 -28.13623 -27.15483 -25.14276 -24.52220 -23.67814 -22.49624 -22.18696 -21.47409 -20.49205 -18.64091 -18.37556 -17.68712 -17.25472 -17.14926 -16.59645 -16.47158 -16.23010 -15.60061 -15.25668 -15.14472 -14.98084 -14.61202 -14.35854 -14.31752 -14.15162 -13.87067 -13.79156 -13.32399 -13.23580 -13.11230 -12.93708 -12.81060 -12.74484 -12.55400 -12.42009 -12.27596 -12.04852 -11.91211 -11.66922 -11.58876 -11.42745 -11.30425 -11.12150 -10.74286 -10.56204 -9.70292 -9.50079 -9.24279 -8.19738 -6.32513 0.41549 0.48602 0.76049 1.21811 1.43583 1.46954 1.54504 1.78468 2.42231 2.52367 2.83915 3.14362 3.41571 3.50722 3.63697 3.76749 3.83195 3.91454 4.05825 4.08136 4.13127 4.19630 4.27007 4.30645 4.34516 4.44165 4.59204 4.60395 4.64431 4.67662 4.67750 4.77819 4.85760 4.87494 4.90677 4.94914 5.04371 5.11933 5.18699 5.26173 5.44534 5.48470 5.52569 5.59214 5.63357 5.65421 5.75532 5.78916 6.09765 6.15453 6.19462 6.83727 7.37686 7.75269 8.92122 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.027656 B = 0.002491 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.184343 B =11237.821466 C =11530.168165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.145 3.855 3 H 0.056 0.944 4 C -0.092 4.092 5 C -0.122 4.122 6 C -0.128 4.128 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.085 4.085 10 C -0.068 4.068 11 C 0.043 3.957 12 N -0.439 5.439 13 C 0.351 3.649 14 N -0.352 5.352 15 N -0.333 5.333 16 C 0.196 3.804 17 C -0.013 4.013 18 C 0.043 3.957 19 C -0.539 4.539 20 H 0.074 0.926 21 C 0.000 4.000 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.268 1.268 25 H -0.288 1.288 26 H -0.260 1.260 27 N -0.479 5.479 28 C 0.065 3.935 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.088 0.912 42 H -0.020 1.020 43 H -0.006 1.006 44 H 0.263 0.737 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.447 -4.990 -22.455 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.038 3.962 3 H 0.074 0.926 4 C -0.092 4.092 5 C -0.141 4.141 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.140 4.140 9 C -0.085 4.085 10 C -0.104 4.104 11 C -0.083 4.083 12 N -0.164 5.164 13 C -0.006 4.006 14 N -0.196 5.196 15 N -0.171 5.171 16 C -0.073 4.073 17 C -0.053 4.053 18 C 0.005 3.995 19 C -0.577 4.577 20 H 0.092 0.908 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.193 1.193 25 H -0.214 1.214 26 H -0.184 1.184 27 N -0.174 5.174 28 C -0.076 4.076 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.147 0.853 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.106 0.894 42 H -0.002 1.002 43 H 0.012 0.988 44 H 0.072 0.928 45 H 0.129 0.871 46 H 0.110 0.890 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.339 -4.380 -22.886 27.897 hybrid contribution 0.030 -0.314 1.361 1.397 sum 15.368 -4.694 -21.526 26.862 Atomic orbital electron populations 1.21951 0.93021 1.01968 1.03256 1.20218 0.96389 0.94704 0.84856 0.92649 1.19481 0.97134 0.99083 0.93544 1.21265 1.00068 1.00698 0.92037 1.21365 0.97628 0.97225 0.98328 1.21472 0.95812 0.97860 0.98756 1.21356 1.00932 1.00093 0.91584 1.19792 0.95683 0.96665 0.96399 1.20610 1.01335 0.98644 0.89858 1.22613 0.83092 1.00190 1.02394 1.59132 1.14749 1.44765 0.97731 1.22730 1.00655 0.92384 0.84870 1.74394 1.21483 1.10701 1.13059 1.73889 1.21203 1.25449 0.96557 1.25299 0.97008 0.87559 0.97415 1.20125 1.01079 1.03086 0.80983 1.18831 0.91799 0.93680 0.95205 1.21573 1.09677 1.34457 0.91973 0.90805 1.26020 0.94847 0.94712 1.04255 1.70125 1.13183 1.36431 1.37829 0.85445 0.77899 0.78633 0.78740 1.19261 1.21412 1.18397 1.46194 1.43775 1.22666 1.04787 1.22473 0.97082 0.84820 1.03184 0.92556 0.92907 0.89775 0.85340 0.83993 0.83586 0.83557 0.86679 0.88690 0.93306 0.88142 0.88296 0.89401 1.00177 0.98759 0.92821 0.87074 0.89007 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.61 71.98 0.62 -3.45 16 2 C 0.15 3.81 2.04 44.20 0.09 3.90 16 3 H 0.06 1.61 7.97 -2.38 -0.02 1.59 16 4 C -0.09 -1.97 5.47 -19.87 -0.11 -2.07 16 5 C -0.12 -2.30 9.08 22.33 0.20 -2.09 16 6 C -0.13 -1.89 10.05 22.22 0.22 -1.67 16 7 C -0.12 -1.57 10.05 22.23 0.22 -1.35 16 8 C -0.12 -1.66 9.66 22.33 0.22 -1.44 16 9 C -0.09 -1.49 5.77 -19.85 -0.11 -1.61 16 10 C -0.07 -0.92 5.95 29.82 0.18 -0.74 16 11 C 0.04 0.82 5.36 86.22 0.46 1.28 16 12 N -0.44 -11.73 4.50 -686.56 -3.09 -14.82 16 13 C 0.35 11.99 6.72 260.11 1.75 13.73 16 14 N -0.35 -14.47 9.22 -58.00 -0.53 -15.01 16 15 N -0.33 -15.10 12.18 -49.53 -0.60 -15.70 16 16 C 0.20 7.98 7.32 137.64 1.01 8.99 16 17 C -0.01 -0.53 5.36 29.85 0.16 -0.37 16 18 C 0.04 2.27 4.95 29.85 0.15 2.42 16 19 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 20 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 21 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 22 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 23 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 27 N -0.48 -15.92 3.20 -538.17 -1.72 -17.64 16 28 C 0.07 1.47 9.15 127.77 1.17 2.64 16 29 H 0.06 1.99 5.74 -2.39 -0.01 1.98 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.94 6.43 -2.38 -0.02 1.92 16 32 H 0.13 2.21 6.41 -2.91 -0.02 2.19 16 33 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 34 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.05 0.98 8.05 -2.39 -0.02 0.96 16 39 H 0.10 1.58 5.31 -2.38 -0.01 1.57 16 40 H 0.10 3.41 7.95 -2.39 -0.02 3.39 16 41 H 0.09 3.58 8.14 -2.39 -0.02 3.57 16 42 H -0.02 -1.24 8.14 -2.39 -0.02 -1.25 16 43 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 44 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 45 H 0.11 1.69 7.64 -2.39 -0.02 1.68 16 46 H 0.09 2.31 7.90 -2.38 -0.02 2.29 16 47 H 0.11 2.02 7.88 -2.39 -0.02 2.00 16 Total: -1.00 -75.92 373.68 4.25 -71.67 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.97 Total: 13.83 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 6.92 Total: -10.72 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -5.66 Total: -120.06 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -75.92 4.25 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121495340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.330 kcal (2) G-P(sol) polarization free energy of solvation -75.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds