Wall clock time and date at job start Tue Mar 31 2020 15:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.12783 * 2 1 4 4 C 1.50623 * 109.31230 * 119.46056 * 2 1 3 5 5 C 1.38735 * 118.42198 * 317.69907 * 4 2 1 6 6 C 1.38011 * 120.37626 * 180.37898 * 5 4 2 7 7 C 1.38268 * 119.86753 * 359.96038 * 6 5 4 8 8 C 1.38025 * 119.83159 * 359.92767 * 7 6 5 9 9 C 1.37831 * 121.84905 * 137.87969 * 4 2 1 10 10 C 1.50718 * 121.66048 * 359.54527 * 9 4 2 11 11 C 1.52896 * 109.95934 * 16.89207 * 10 9 4 12 12 N 1.46631 * 109.30538 * 240.51122 * 2 1 3 13 13 C 1.38580 * 110.99975 * 310.55048 * 12 2 1 14 14 N 1.31217 * 126.47451 * 310.85035 * 13 12 2 15 15 N 1.28522 * 109.86136 * 180.02562 * 14 13 12 16 16 C 1.30287 * 110.05618 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.35105 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.47405 * 90.01965 * 17 16 15 19 19 C 1.50699 * 109.47028 * 180.02562 * 18 17 16 20 20 H 1.07991 * 120.00320 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99570 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00033 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47667 * 179.97438 * 23 21 19 25 25 H 1.48505 * 109.46958 * 59.99981 * 23 21 19 26 26 H 1.48499 * 109.47324 * 300.00730 * 23 21 19 27 27 N 1.36456 * 126.47486 * 131.14648 * 13 12 2 28 28 C 1.46503 * 127.13557 * 359.97438 * 27 13 12 29 29 H 1.09000 * 109.47162 * 179.48287 * 1 2 3 30 30 H 1.09000 * 109.47415 * 299.48675 * 1 2 3 31 31 H 1.09004 * 109.46812 * 59.49128 * 1 2 3 32 32 H 1.08000 * 119.81459 * 0.34072 * 5 4 2 33 33 H 1.07998 * 120.07001 * 179.97438 * 6 5 4 34 34 H 1.08002 * 120.08190 * 179.97438 * 7 6 5 35 35 H 1.08003 * 119.83235 * 180.02562 * 8 7 6 36 36 H 1.08994 * 109.38637 * 256.74528 * 10 9 4 37 37 H 1.09001 * 109.31131 * 136.99509 * 10 9 4 38 38 H 1.09000 * 109.63065 * 189.91102 * 11 10 9 39 39 H 1.09002 * 109.79413 * 69.42140 * 11 10 9 40 40 H 1.09001 * 109.46679 * 330.02293 * 17 16 15 41 41 H 1.08997 * 109.47075 * 210.02246 * 17 16 15 42 42 H 1.09002 * 109.47071 * 59.99950 * 18 17 16 43 43 H 1.09004 * 109.46716 * 300.00556 * 18 17 16 44 44 H 0.96998 * 120.00347 * 359.97438 * 22 21 19 45 45 H 1.08995 * 109.47450 * 265.00272 * 28 27 13 46 46 H 1.08999 * 109.47067 * 25.00365 * 28 27 13 47 47 H 1.09006 * 109.46805 * 145.00220 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8871 1.0299 0.0000 4 6 2.0281 -0.6991 1.2377 5 6 1.3948 -0.4374 2.4440 6 6 1.8231 -1.0497 3.6043 7 6 2.8888 -1.9299 3.5655 8 6 3.5185 -2.1932 2.3658 9 6 3.0882 -1.5792 1.1990 10 6 3.8037 -1.8998 -0.0882 11 6 3.4760 -0.8440 -1.1444 12 7 2.0147 -0.6812 -1.2046 13 6 1.3851 -1.9045 -1.3707 14 7 1.2383 -2.8364 -0.4587 15 7 0.6069 -3.8391 -0.9567 16 6 0.3163 -3.6085 -2.2056 17 6 -0.4183 -4.5371 -3.1379 18 6 -1.9209 -4.2611 -3.0531 19 6 -2.6555 -5.1901 -3.9849 20 1 -2.1058 -5.9055 -4.5785 21 6 -4.0296 -5.1268 -4.0796 22 7 -4.6991 -4.2553 -3.3571 23 14 -4.9403 -6.2778 -5.2351 24 1 -6.3987 -6.0110 -5.1519 25 1 -4.6721 -7.6853 -4.8447 26 1 -4.4740 -6.0529 -6.6270 27 7 0.8056 -2.3698 -2.5151 28 6 0.7228 -1.6834 -3.8068 29 1 -0.3633 -1.0276 -0.0093 30 1 -0.3634 0.5058 0.8945 31 1 -0.3633 0.5217 -0.8854 32 1 0.5623 0.2499 2.4754 33 1 1.3268 -0.8421 4.5407 34 1 3.2271 -2.4107 4.4715 35 1 4.3506 -2.8810 2.3354 36 1 3.4853 -2.8793 -0.4447 37 1 4.8789 -1.9116 0.0904 38 1 3.8485 -1.1697 -2.1156 39 1 3.9394 0.1049 -0.8740 40 1 -0.2219 -5.5701 -2.8509 41 1 -0.0757 -4.3722 -4.1594 42 1 -2.1174 -3.2281 -3.3400 43 1 -2.2635 -4.4259 -2.0315 44 1 -4.2262 -3.6574 -2.7573 45 1 -0.2322 -1.1634 -3.8813 46 1 1.5364 -0.9626 -3.8881 47 1 0.8026 -2.4138 -4.6121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121495341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:51 Heat of formation + Delta-G solvation = 111.261028 kcal Electronic energy + Delta-G solvation = -28481.342230 eV Core-core repulsion = 24858.343901 eV Total energy + Delta-G solvation = -3622.998329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.82128 -40.44372 -37.44962 -34.90269 -34.14875 -33.85584 -32.05682 -31.14823 -29.81837 -28.61342 -27.56896 -27.17525 -24.94655 -24.09684 -23.45854 -22.06777 -21.63231 -21.28895 -20.09648 -19.42113 -17.10537 -16.85969 -16.60223 -16.41631 -15.90419 -15.35370 -14.89778 -14.62630 -14.25502 -14.15674 -13.93231 -13.72777 -13.31816 -13.18630 -13.14833 -12.79054 -12.71611 -12.48801 -12.16035 -12.08779 -11.91217 -11.74311 -11.58860 -11.52930 -11.23080 -11.00097 -10.89013 -10.70628 -10.38011 -10.30170 -10.08693 -10.02061 -9.77544 -8.96741 -8.71982 -8.71128 -8.48699 -8.37856 -8.31499 -6.41010 -4.11781 1.40829 1.46104 2.04757 2.48228 3.22299 3.41647 3.44329 3.62682 3.69540 3.78916 4.50370 4.53840 4.58509 4.68850 4.77581 4.87662 4.94336 4.98901 5.07467 5.13508 5.21164 5.25326 5.32300 5.36505 5.41140 5.45943 5.50743 5.54229 5.55406 5.61773 5.80008 5.84162 5.86877 6.04725 6.11533 6.15564 6.22883 6.26660 6.35187 6.41544 6.54127 6.55532 6.57707 6.68896 6.89679 7.05609 7.26183 7.38936 7.43999 8.09680 8.39445 8.80922 9.14657 9.61186 10.99357 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019002 B = 0.003145 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.173745 B = 8900.977397 C = 9256.264002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.136 3.864 3 H 0.104 0.896 4 C -0.096 4.096 5 C -0.108 4.108 6 C -0.128 4.128 7 C -0.118 4.118 8 C -0.118 4.118 9 C -0.040 4.040 10 C -0.115 4.115 11 C 0.060 3.940 12 N -0.451 5.451 13 C 0.319 3.681 14 N -0.293 5.293 15 N -0.300 5.300 16 C 0.208 3.792 17 C -0.023 4.023 18 C 0.020 3.980 19 C -0.605 4.605 20 H 0.052 0.948 21 C 0.017 3.983 22 N -0.909 5.909 23 Si 1.070 2.930 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.288 1.288 27 N -0.467 5.467 28 C 0.083 3.917 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.005 0.995 43 H 0.016 0.984 44 H 0.269 0.731 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.498 11.590 6.252 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.028 3.972 3 H 0.121 0.879 4 C -0.097 4.097 5 C -0.127 4.127 6 C -0.146 4.146 7 C -0.136 4.136 8 C -0.136 4.136 9 C -0.040 4.040 10 C -0.154 4.154 11 C -0.067 4.067 12 N -0.175 5.175 13 C -0.036 4.036 14 N -0.137 5.137 15 N -0.140 5.140 16 C -0.059 4.059 17 C -0.063 4.063 18 C -0.018 4.018 19 C -0.643 4.643 20 H 0.070 0.930 21 C -0.187 4.187 22 N -0.545 5.545 23 Si 0.898 3.102 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.214 1.214 27 N -0.160 5.160 28 C -0.061 4.061 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.023 0.977 43 H 0.034 0.966 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.966 10.793 6.564 21.152 hybrid contribution 1.569 0.617 -0.001 1.686 sum 18.535 11.410 6.563 22.733 Atomic orbital electron populations 1.21999 0.92915 1.03478 1.02292 1.20543 0.96131 0.96660 0.83823 0.87870 1.19951 0.95967 0.98487 0.95324 1.21005 0.99288 1.00307 0.92097 1.20981 0.97501 0.98071 0.98009 1.21000 0.96543 0.98428 0.97637 1.20945 1.00576 0.99833 0.92290 1.19206 0.95063 0.95397 0.94359 1.21150 0.99889 1.00901 0.93413 1.22277 0.85325 0.99802 0.99282 1.59367 1.05350 1.14133 1.38608 1.22081 1.02605 0.93968 0.84978 1.74759 1.16158 0.98264 1.24549 1.74093 1.14701 1.19488 1.05704 1.25598 0.99205 0.85670 0.95394 1.20269 0.96699 0.95517 0.93795 1.19172 0.88105 0.96758 0.97768 1.21956 0.94242 1.21475 1.26653 0.92965 1.25863 0.95095 0.98833 0.98920 1.70778 1.39312 1.19927 1.24453 0.83534 0.76198 0.75296 0.75216 1.20751 1.21298 1.21416 1.46198 1.42793 1.15577 1.11442 1.21969 1.04100 0.98080 0.81916 0.91703 0.91193 0.91781 0.86272 0.86443 0.86486 0.86630 0.89455 0.90360 0.89965 0.89042 0.89280 0.91144 0.97709 0.96611 0.92098 0.90146 0.89222 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.40 37.16 0.31 -1.67 16 2 C 0.14 1.65 2.82 -69.05 -0.19 1.45 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.10 -1.25 4.52 -104.62 -0.47 -1.72 16 5 C -0.11 -1.34 9.08 -39.48 -0.36 -1.70 16 6 C -0.13 -1.50 10.05 -39.65 -0.40 -1.90 16 7 C -0.12 -1.39 10.05 -39.65 -0.40 -1.79 16 8 C -0.12 -1.48 9.66 -39.49 -0.38 -1.86 16 9 C -0.04 -0.52 4.65 -104.60 -0.49 -1.01 16 10 C -0.12 -1.36 5.14 -27.93 -0.14 -1.50 16 11 C 0.06 0.62 6.02 -3.74 -0.02 0.60 16 12 N -0.45 -5.72 4.91 -168.36 -0.83 -6.55 16 13 C 0.32 5.14 4.27 -318.87 -1.36 3.78 16 14 N -0.29 -5.56 7.69 30.31 0.23 -5.33 16 15 N -0.30 -6.41 12.18 32.99 0.40 -6.01 16 16 C 0.21 4.10 7.32 -154.02 -1.13 2.98 16 17 C -0.02 -0.47 5.53 -27.88 -0.15 -0.63 16 18 C 0.02 0.51 4.27 -27.88 -0.12 0.39 16 19 C -0.61 -16.81 9.11 -34.44 -0.31 -17.12 16 20 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 21 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 22 N -0.91 -27.81 13.65 55.43 0.76 -27.05 16 23 Si 1.07 24.88 29.90 -169.99 -5.08 19.80 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 27 N -0.47 -7.71 3.21 -121.46 -0.39 -8.10 16 28 C 0.08 1.03 11.01 59.85 0.66 1.69 16 29 H 0.06 1.12 6.53 -51.93 -0.34 0.79 16 30 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.12 1.27 6.40 -52.49 -0.34 0.94 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 36 H 0.09 1.29 6.52 -51.93 -0.34 0.95 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 41 H 0.07 1.30 7.38 -51.93 -0.38 0.92 16 42 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 43 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 44 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 47 H 0.09 1.01 7.41 -51.93 -0.38 0.62 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -33.85 371.04 -11.47 -45.32 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.09 Total: 1.94 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -5.06 Total: -19.61 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.17 Total: -53.05 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.85 -11.47 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121495341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.578 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds